Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29640.1 | EES07517 | AT3G48150.1 | 21798944 |
| AT1G29640.1 | EES05709 | AT4G17680.1 | 21798944 |
| AT1G29640.1 | KXG38894 | AT4G17680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13257 | Soybean | mitochondrion | 12.8 | 42.86 |
| Os05t0518800-00 | Rice | cytosol, mitochondrion, nucleus | 33.54 | 42.31 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 25.61 | 42.0 |
| Zm00001d038814_P001 | Maize | cytosol, nucleus, plastid | 35.98 | 39.33 |
| TraesCS3D01G283600.1 | Wheat | cytosol, plastid | 21.95 | 37.11 |
| KXG33366 | Sorghum | cytosol | 31.71 | 35.37 |
| TraesCS1B01G351400.1 | Wheat | cytosol | 28.66 | 34.56 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 24.39 | 33.9 |
| HORVU1Hr1G076310.1 | Barley | nucleus | 29.88 | 32.24 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 23.17 | 31.67 |
| EES18553 | Sorghum | cytosol | 31.1 | 31.29 |
| CDX94683 | Canola | cytosol | 25.61 | 30.88 |
| TraesCS1A01G339100.1 | Wheat | cytosol | 28.05 | 30.87 |
| AT4G18980.1 | Thale cress | cytosol | 19.51 | 30.19 |
| Bra030154.1-P | Field mustard | nucleus | 25.0 | 30.15 |
| CDY68974 | Canola | nucleus | 25.0 | 30.15 |
| CDX94684 | Canola | cytosol | 25.0 | 30.15 |
| CDX84328 | Canola | cytosol | 23.17 | 29.92 |
| CDY17236 | Canola | cytosol | 22.56 | 29.13 |
| Bra005436.1-P | Field mustard | cytosol | 22.56 | 29.13 |
| AT5G45630.1 | Thale cress | nucleus | 20.12 | 28.95 |
| CDX90198 | Canola | cytosol | 24.39 | 28.57 |
| CDX98601 | Canola | cytosol | 18.9 | 28.44 |
| Bra012560.1-P | Field mustard | cytosol | 18.9 | 28.44 |
| KRH71505 | Soybean | cytosol | 17.07 | 28.28 |
| Bra020981.1-P | Field mustard | nucleus | 18.9 | 28.18 |
| CDX76503 | Canola | nucleus | 18.9 | 28.18 |
| Bra017599.1-P | Field mustard | cytosol | 19.51 | 28.07 |
| CDY72609 | Canola | cytosol | 19.51 | 28.07 |
| KRH21137 | Soybean | cytosol | 20.12 | 27.97 |
| AT2G34340.1 | Thale cress | nucleus | 23.17 | 27.94 |
| CDX78911 | Canola | nucleus | 17.68 | 27.62 |
| CDY26321 | Canola | nucleus | 23.17 | 27.54 |
| CDY09268 | Canola | nucleus | 18.29 | 27.27 |
| CDY01576 | Canola | nucleus | 18.29 | 27.27 |
| CDY35299 | Canola | nucleus | 22.56 | 27.01 |
| Bra013366.1-P | Field mustard | nucleus | 18.9 | 26.96 |
| CDX99846 | Canola | cytosol | 22.56 | 26.81 |
| CDY72186 | Canola | cytosol | 23.17 | 26.76 |
| AT1G29640.1 | Thale cress | cytosol | 22.56 | 26.43 |
| PGSC0003DMT400035020 | Potato | nucleus | 22.56 | 26.43 |
| Bra010823.1-P | Field mustard | nucleus | 21.95 | 26.28 |
| CDX99403 | Canola | nucleus | 17.68 | 26.13 |
| CDY43682 | Canola | cytosol | 22.56 | 26.06 |
| PGSC0003DMT400035019 | Potato | nucleus | 21.95 | 25.71 |
| Solyc03g005890.1.1 | Tomato | nucleus | 19.51 | 23.19 |
| KRH11111 | Soybean | nucleus | 20.12 | 19.08 |
| Bra032329.1-P | Field mustard | nucleus | 21.95 | 17.48 |
| Bra021903.1-P | Field mustard | nucleus | 14.02 | 10.6 |
Protein Annotations
| EnsemblPlants:KXG22361 | EnsemblPlantsGene:SORBI_3009G200400 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF9 | PFAM:PF04520 |
| ProteinID:KXG22361 | ProteinID:KXG22361.1 | SEG:seg | UniParc:UPI00081ABAD0 | UniProt:A0A1B6P9T8 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr9:+:55018487..55020215
Molecular Weight (calculated)
17206.1 Da
IEP (calculated)
8.351
GRAVY (calculated)
-0.443
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MCLAPAAATM AEAAADVLCP PGHHHSSPGD DQRQQPHGWP GRKPCRPRVD DDDAAAFGGS SKVRRPAGSS SSSSSAPVAI VIPVAAVKRR PSSSSWAAEE
101: DYYGDDGEAA AFVPPHVALA ARWRLSEGRA ASSMCEGRGR TLKGRDLQSV RNAVLRMTGF IETA
101: DYYGDDGEAA AFVPPHVALA ARWRLSEGRA ASSMCEGRGR TLKGRDLQSV RNAVLRMTGF IETA
001: MSEEFDESEI IFSDNYFPIR RREDGNEKEN NRPVDFRENS ERVWNKSSRR SKTTPLPSAV TAFSSSLPVN IPMRRYSTEE EYSDDDGGRK MIPPHLIVGR
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA
Arabidopsis Description
At1g29640 [Source:UniProtKB/TrEMBL;Acc:Q9C7N7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.