Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0656300-01 | |
| Os02t0687500-01 | |
| Os06t0679100-00 | |
| Os10t0565500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29640.1 | Os02t0656300-01 | AT3G48150.1 | 21798944 |
| AT1G29640.1 | Os06t0679100-00 | AT3G48150.1 | 21798944 |
| AT1G29640.1 | Os02t0687500-01 | AT4G17680.1 | 21798944 |
| AT1G29640.1 | Os10t0565500-01 | AT4G17680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13257 | Soybean | mitochondrion | 19.23 | 51.02 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 41.54 | 45.76 |
| TraesCS1B01G351400.1 | Wheat | cytosol | 46.92 | 44.85 |
| HORVU1Hr1G076310.1 | Barley | nucleus | 50.77 | 43.42 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 33.08 | 43.0 |
| TraesCS1A01G339100.1 | Wheat | cytosol | 46.15 | 40.27 |
| AT4G18980.1 | Thale cress | cytosol | 30.77 | 37.74 |
| KRH21137 | Soybean | cytosol | 33.85 | 37.29 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 33.85 | 36.67 |
| Os01t0727700-00 | Rice | cytosol | 30.0 | 35.78 |
| Os01t0748300-00 | Rice | cytosol | 42.31 | 35.48 |
| CDY68974 | Canola | nucleus | 36.15 | 34.56 |
| Bra030154.1-P | Field mustard | nucleus | 36.15 | 34.56 |
| CDY09268 | Canola | nucleus | 29.23 | 34.55 |
| CDY35299 | Canola | nucleus | 36.15 | 34.31 |
| CDX78911 | Canola | nucleus | 27.69 | 34.29 |
| CDX98601 | Canola | cytosol | 28.46 | 33.95 |
| Bra012560.1-P | Field mustard | cytosol | 28.46 | 33.95 |
| CDX94683 | Canola | cytosol | 35.38 | 33.82 |
| CDX94684 | Canola | cytosol | 35.38 | 33.82 |
| Os05t0531100-01 | Rice | nucleus | 36.92 | 33.8 |
| CDX76503 | Canola | nucleus | 28.46 | 33.64 |
| Bra020981.1-P | Field mustard | nucleus | 28.46 | 33.64 |
| KXG22361 | Sorghum | nucleus | 42.31 | 33.54 |
| Zm00001d038814_P001 | Maize | cytosol, nucleus, plastid | 38.46 | 33.33 |
| CDX99846 | Canola | cytosol | 35.38 | 33.33 |
| CDY26321 | Canola | nucleus | 34.62 | 32.61 |
| CDY72609 | Canola | cytosol | 28.46 | 32.46 |
| Bra017599.1-P | Field mustard | cytosol | 28.46 | 32.46 |
| AT5G45630.1 | Thale cress | nucleus | 28.46 | 32.46 |
| CDX99403 | Canola | nucleus | 27.69 | 32.43 |
| KRH71505 | Soybean | cytosol | 24.62 | 32.32 |
| AT1G29640.1 | Thale cress | cytosol | 34.62 | 32.14 |
| CDY01576 | Canola | nucleus | 26.92 | 31.82 |
| CDY43682 | Canola | cytosol | 34.62 | 31.69 |
| CDY72186 | Canola | cytosol | 34.62 | 31.69 |
| CDX90198 | Canola | cytosol | 33.85 | 31.43 |
| Bra013366.1-P | Field mustard | nucleus | 27.69 | 31.3 |
| CDX84328 | Canola | cytosol | 30.0 | 30.71 |
| CDY17236 | Canola | cytosol | 29.23 | 29.92 |
| Bra005436.1-P | Field mustard | cytosol | 29.23 | 29.92 |
| AT2G34340.1 | Thale cress | nucleus | 30.77 | 29.41 |
| Bra010823.1-P | Field mustard | nucleus | 30.0 | 28.47 |
| PGSC0003DMT400035019 | Potato | nucleus | 27.69 | 25.71 |
| PGSC0003DMT400035020 | Potato | nucleus | 27.69 | 25.71 |
| Solyc03g005890.1.1 | Tomato | nucleus | 26.15 | 24.64 |
| KRH11111 | Soybean | nucleus | 32.31 | 24.28 |
| Bra032329.1-P | Field mustard | nucleus | 32.31 | 20.39 |
| Bra021903.1-P | Field mustard | nucleus | 22.31 | 13.36 |
Protein Annotations
| EnsemblPlants:Os05t0518800-00 | EnsemblPlantsGene:Os05g0518800 | EntrezGene:4339336 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF20 |
| PFAM:PF04520 | ProteinID:BAF17973.1 | ProteinID:BAS94911.1 | ProteinID:EEE64382.1 | RefSeq:XP_015638663.1 | SEG:seg |
| UniParc:UPI0000E12581 | UniProt:Q0DGQ0 | MapMan:35.2 | : | : | : |
Description
Protein of unknown function DUF584 family protein. (Os05t0518800-00)
Coordinates
chr5:+:25748506..25749014
Molecular Weight (calculated)
14385.8 Da
IEP (calculated)
8.299
GRAVY (calculated)
-0.805
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEFQEADVL WPDHHQHLRR DDDARRRRHQ EQQHGGVDDA DDSRGGTGTP SAPVGIPVTR APTTRRISHG STAPAAAFVP PHELVAARAR RCSEERAAFS
101: VCVGNGRTLK GRDLRDVRTA VLRMTGFLET
101: VCVGNGRTLK GRDLRDVRTA VLRMTGFLET
001: MSEEFDESEI IFSDNYFPIR RREDGNEKEN NRPVDFRENS ERVWNKSSRR SKTTPLPSAV TAFSSSLPVN IPMRRYSTEE EYSDDDGGRK MIPPHLIVGR
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA
Arabidopsis Description
At1g29640 [Source:UniProtKB/TrEMBL;Acc:Q9C7N7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.