Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0656300-01 | |
| Os02t0687500-01 | |
| Os06t0679100-00 | |
| Os10t0565500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29640.1 | Os02t0656300-01 | AT3G48150.1 | 21798944 |
| AT1G29640.1 | Os06t0679100-00 | AT3G48150.1 | 21798944 |
| AT1G29640.1 | Os02t0687500-01 | AT4G17680.1 | 21798944 |
| AT1G29640.1 | Os10t0565500-01 | AT4G17680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33366 | Sorghum | cytosol | 44.52 | 46.94 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 27.74 | 43.0 |
| KRH13257 | Soybean | mitochondrion | 13.55 | 42.86 |
| Os05t0518800-00 | Rice | cytosol, mitochondrion, nucleus | 35.48 | 42.31 |
| Zm00001d043455_P001 | Maize | cytosol | 38.71 | 40.0 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 29.68 | 38.98 |
| Os01t0727700-00 | Rice | cytosol | 26.45 | 37.61 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 28.39 | 36.67 |
| Os05t0531100-01 | Rice | nucleus | 33.55 | 36.62 |
| CDX78911 | Canola | nucleus | 24.52 | 36.19 |
| CDX99403 | Canola | nucleus | 25.81 | 36.04 |
| AT4G18980.1 | Thale cress | cytosol | 24.52 | 35.85 |
| CDY26321 | Canola | nucleus | 31.61 | 35.51 |
| CDX99846 | Canola | cytosol | 30.97 | 34.78 |
| AT1G29640.1 | Thale cress | cytosol | 30.97 | 34.29 |
| Bra013366.1-P | Field mustard | nucleus | 25.16 | 33.91 |
| CDX94683 | Canola | cytosol | 29.68 | 33.82 |
| CDX94684 | Canola | cytosol | 29.68 | 33.82 |
| CDY68974 | Canola | nucleus | 29.68 | 33.82 |
| Bra030154.1-P | Field mustard | nucleus | 29.68 | 33.82 |
| CDX90198 | Canola | cytosol | 29.68 | 32.86 |
| CDY35299 | Canola | nucleus | 29.03 | 32.85 |
| CDX84328 | Canola | cytosol | 26.45 | 32.28 |
| CDY09268 | Canola | nucleus | 22.58 | 31.82 |
| Bra020981.1-P | Field mustard | nucleus | 22.58 | 31.82 |
| AT5G45630.1 | Thale cress | nucleus | 23.23 | 31.58 |
| CDY17236 | Canola | cytosol | 25.81 | 31.5 |
| Bra005436.1-P | Field mustard | cytosol | 25.81 | 31.5 |
| KRH21137 | Soybean | cytosol | 23.87 | 31.36 |
| CDX98601 | Canola | cytosol | 21.94 | 31.19 |
| Bra012560.1-P | Field mustard | cytosol | 21.94 | 31.19 |
| CDY43682 | Canola | cytosol | 28.39 | 30.99 |
| CDY72186 | Canola | cytosol | 28.39 | 30.99 |
| CDX76503 | Canola | nucleus | 21.94 | 30.91 |
| CDY72609 | Canola | cytosol | 22.58 | 30.7 |
| Bra017599.1-P | Field mustard | cytosol | 22.58 | 30.7 |
| Bra010823.1-P | Field mustard | nucleus | 27.1 | 30.66 |
| CDY01576 | Canola | nucleus | 20.65 | 29.09 |
| AT2G34340.1 | Thale cress | nucleus | 25.16 | 28.68 |
| PGSC0003DMT400035020 | Potato | nucleus | 25.16 | 27.86 |
| KRH71505 | Soybean | cytosol | 17.42 | 27.27 |
| PGSC0003DMT400035019 | Potato | nucleus | 24.52 | 27.14 |
| Solyc03g005890.1.1 | Tomato | nucleus | 23.23 | 26.09 |
| KRH11111 | Soybean | nucleus | 24.52 | 21.97 |
| Bra032329.1-P | Field mustard | nucleus | 29.03 | 21.84 |
| Bra021903.1-P | Field mustard | nucleus | 18.71 | 13.36 |
Protein Annotations
| EnsemblPlants:Os01t0748300-00 | EnsemblPlantsGene:Os01g0748300 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF9 | PFAM:PF04520 |
| ProteinID:BAS74336.1 | UniParc:UPI00039393F3 | UniProt:A0A0P0V888 | MapMan:35.2 | : | : |
Description
Protein of unknown function DUF584 domain containing protein. (Os01t0748300-00)
Coordinates
chr1:-:31324550..31328260
Molecular Weight (calculated)
16785.5 Da
IEP (calculated)
7.302
GRAVY (calculated)
-0.500
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEFQEADIL WPDTAALQEA DVLWPAEHHR DYERCRHHHH AAQPAVCPVA PLRPSSSSAP VRIPAPTTTT FAGARRGYYE DDGTRTDYSA GAGASSRIVP
101: PHVYVAAARR GSEGRTVASS VCVGHGRTLK GRDLRAVRNA VLHMTGFLGG GPDEY
101: PHVYVAAARR GSEGRTVASS VCVGHGRTLK GRDLRAVRNA VLHMTGFLGG GPDEY
001: MSEEFDESEI IFSDNYFPIR RREDGNEKEN NRPVDFRENS ERVWNKSSRR SKTTPLPSAV TAFSSSLPVN IPMRRYSTEE EYSDDDGGRK MIPPHLIVGR
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA
Arabidopsis Description
At1g29640 [Source:UniProtKB/TrEMBL;Acc:Q9C7N7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.