Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90198 | Canola | cytosol | 66.43 | 66.43 |
| CDY35299 | Canola | nucleus | 65.0 | 66.42 |
| CDX99846 | Canola | cytosol | 65.0 | 65.94 |
| KRH13257 | Soybean | mitochondrion | 22.86 | 65.31 |
| CDY26321 | Canola | nucleus | 64.29 | 65.22 |
| CDY68974 | Canola | nucleus | 61.43 | 63.24 |
| CDX94684 | Canola | cytosol | 61.43 | 63.24 |
| Bra010823.1-P | Field mustard | nucleus | 61.43 | 62.77 |
| Bra030154.1-P | Field mustard | nucleus | 60.71 | 62.5 |
| CDX94683 | Canola | cytosol | 60.0 | 61.76 |
| AT4G18980.1 | Thale cress | cytosol | 36.43 | 48.11 |
| GSMUA_Achr6P26140_001 | Banana | cytosol | 34.29 | 47.06 |
| AT2G34340.1 | Thale cress | nucleus | 45.0 | 46.32 |
| AT5G45630.1 | Thale cress | nucleus | 37.14 | 45.61 |
| GSMUA_Achr4P15500_001 | Banana | cytosol | 37.14 | 44.83 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.71 | 44.25 |
| KRH21137 | Soybean | cytosol | 36.43 | 43.22 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 30.71 | 43.0 |
| Zm00001d011752_P001 | Maize | cytosol | 26.43 | 41.11 |
| GSMUA_Achr9P05760_001 | Banana | nucleus | 35.71 | 40.32 |
| Zm00001d043586_P001 | Maize | cytosol, plastid | 26.43 | 39.36 |
| Bra032329.1-P | Field mustard | nucleus | 57.86 | 39.32 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 32.86 | 38.98 |
| KRH71505 | Soybean | cytosol | 27.14 | 38.38 |
| GSMUA_Achr2P09490_001 | Banana | cytosol | 32.86 | 38.33 |
| GSMUA_Achr1P11590_001 | Banana | cytosol | 31.43 | 38.26 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 32.14 | 37.5 |
| TraesCS3D01G283600.1 | Wheat | cytosol, plastid | 25.71 | 37.11 |
| GSMUA_Achr7P24940_001 | Banana | cytosol | 31.43 | 36.36 |
| PGSC0003DMT400035020 | Potato | nucleus | 35.0 | 35.0 |
| Zm00001d010814_P001 | Maize | cytosol | 34.29 | 34.78 |
| Os05t0518800-00 | Rice | cytosol, mitochondrion, nucleus | 32.14 | 34.62 |
| PGSC0003DMT400035019 | Potato | nucleus | 34.29 | 34.29 |
| Os01t0727700-00 | Rice | cytosol | 26.43 | 33.95 |
| Solyc03g005890.1.1 | Tomato | nucleus | 32.86 | 33.33 |
| Os05t0531100-01 | Rice | nucleus | 33.57 | 33.1 |
| TraesCS1B01G351400.1 | Wheat | cytosol | 32.14 | 33.09 |
| Os01t0748300-00 | Rice | cytosol | 34.29 | 30.97 |
| TraesCS1A01G339100.1 | Wheat | cytosol | 32.86 | 30.87 |
| KRH11111 | Soybean | nucleus | 37.14 | 30.06 |
| Zm00001d043455_P001 | Maize | cytosol | 32.14 | 30.0 |
| HORVU1Hr1G076310.1 | Barley | nucleus | 32.14 | 29.61 |
| TraesCS1A01G351000.1 | Wheat | nucleus | 28.57 | 29.41 |
| KXG33366 | Sorghum | cytosol | 30.71 | 29.25 |
| TraesCS1B01G365200.1 | Wheat | nucleus | 27.86 | 28.06 |
| Zm00001d038814_P001 | Maize | cytosol, nucleus, plastid | 27.86 | 26.0 |
| EES18553 | Sorghum | cytosol | 30.0 | 25.77 |
| KXG22361 | Sorghum | nucleus | 26.43 | 22.56 |
Protein Annotations
| MapMan:35.2 | EntrezGene:839841 | UniProt:A0A178WCZ2 | ProteinID:AAG51753.1 | ProteinID:AEE31114.1 | EMBL:AK227398 |
| ArrayExpress:AT1G29640 | EnsemblPlantsGene:AT1G29640 | RefSeq:AT1G29640 | TAIR:AT1G29640 | RefSeq:AT1G29640-TAIR-G | EnsemblPlants:AT1G29640.1 |
| TAIR:AT1G29640.1 | Unigene:At.40695 | EMBL:BT004755 | RefSeq:NP_174257.1 | ProteinID:OAP15243.1 | PFAM:PF04520 |
| PO:PO:0000293 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF7 | UniProt:Q9C7N7 | InterPro:Senescence_reg_S40 | UniParc:UPI000000C469 |
| SEG:seg | : | : | : | : | : |
Description
At1g29640 [Source:UniProtKB/TrEMBL;Acc:Q9C7N7]
Coordinates
chr1:-:10355638..10356482
Molecular Weight (calculated)
16038.8 Da
IEP (calculated)
8.473
GRAVY (calculated)
-0.890
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEFDESEI IFSDNYFPIR RREDGNEKEN NRPVDFRENS ERVWNKSSRR SKTTPLPSAV TAFSSSLPVN IPMRRYSTEE EYSDDDGGRK MIPPHLIVGR
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.