Factsheet for GSMUA_Achr6P26140_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P00560_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P18250_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P30100_001
GSMUA_Achr8P14860_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29640.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT1G29640.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT1G29640.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT1G29640.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT1G29640.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT1G29640.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT1G29640.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13257	Soybean	mitochondrion	32.35	67.35
GSMUA_Achr9P05760_001	Banana	nucleus	72.55	59.68
GSMUA_Achr2P09490_001	Banana	cytosol	66.67	56.67
GSMUA_AchrUn_...	Banana	nucleus	57.84	52.21
GSMUA_Achr4P15500_001	Banana	cytosol	55.88	49.14
GSMUA_Achr7P24940_001	Banana	cytosol	54.9	46.28
GSMUA_Achr7P24930_001	Banana	plastid	43.14	44.0
CDX78911	Canola	nucleus	44.12	42.86
GSMUA_Achr1P11590_001	Banana	cytosol	48.04	42.61
AT4G18980.1	Thale cress	cytosol	43.14	41.51
CDX99403	Canola	nucleus	44.12	40.54
KRH71505	Soybean	cytosol	39.22	40.4
Bra020981.1-P	Field mustard	nucleus	43.14	40.0
KRH21137	Soybean	cytosol	46.08	39.83
GSMUA_Achr3P31830_001	Banana	nucleus	46.08	39.83
CDX98601	Canola	cytosol	42.16	39.45
Bra012560.1-P	Field mustard	cytosol	42.16	39.45
Bra013366.1-P	Field mustard	nucleus	44.12	39.13
CDX76503	Canola	nucleus	42.16	39.09
CDY09268	Canola	nucleus	42.16	39.09
CDY01576	Canola	nucleus	41.18	38.18
AT5G45630.1	Thale cress	nucleus	42.16	37.72
GSMUA_Achr9P05750_001	Banana	cytosol	43.14	36.67
CDX84328	Canola	cytosol	45.1	36.22
CDY35299	Canola	nucleus	47.06	35.04
CDX90198	Canola	cytosol	48.04	35.0
CDY26321	Canola	nucleus	47.06	34.78
CDX99846	Canola	cytosol	47.06	34.78
CDY17236	Canola	cytosol	43.14	34.65
Bra005436.1-P	Field mustard	cytosol	43.14	34.65
CDY68974	Canola	nucleus	46.08	34.56
Bra030154.1-P	Field mustard	nucleus	46.08	34.56
CDX94684	Canola	cytosol	46.08	34.56
CDX94683	Canola	cytosol	46.08	34.56
AT1G29640.1	Thale cress	cytosol	47.06	34.29
CDY72609	Canola	cytosol	37.25	33.33
Bra017599.1-P	Field mustard	cytosol	37.25	33.33
CDY43682	Canola	cytosol	45.1	32.39
CDY72186	Canola	cytosol	45.1	32.39
AT2G34340.1	Thale cress	nucleus	43.14	32.35
Bra010823.1-P	Field mustard	nucleus	43.14	32.12
PGSC0003DMT400035019	Potato	nucleus	42.16	30.71
PGSC0003DMT400035020	Potato	nucleus	42.16	30.71
Solyc03g005890.1.1	Tomato	nucleus	40.2	29.71
KRH11111	Soybean	nucleus	46.08	27.17
Bra032329.1-P	Field mustard	nucleus	44.12	21.84
Bra021903.1-P	Field mustard	nucleus	26.47	12.44

Protein Annotations

EnsemblPlants:GSMUA_Achr6P26140_001	EnsemblPlants:GSMUA_Achr6T26140_001	EnsemblPlantsGene:GSMUA_Achr6G26140_001	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF7
PFAM:PF04520	SEG:seg	UniParc:UPI000296D035	UniProt:M0TAA9	MapMan:35.2	:

Description

DUF584 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G26140_001]

Coordinates

chr6:+:27014824..27015207

Molecular Weight (calculated)

11512.7 Da

IEP (calculated)

9.501

GRAVY (calculated)

-0.695

Length

102 amino acids

Sequence
(BLAST)

001: MEEFQEADVL WPDRDRDGDE DTEEWHAGLG AHRKASSPVR IPSRPRAGGR KSDTIPPHLI VARRVADKMA FSMCVGIGRT LKGRDLSQVR NSILRMTGFL
101: ER

Best Arabidopsis Sequence Match ( AT4G18980.1 )
(BLAST)

001: MSEEFQESEV IFSDESFTRK DNKISHNNEN YERKSTEKDK ISSPVRIPSR TTIRYTEEEG EMTPPHVIIE KRRTEAQMAF SFCTLKGRDL SRHRNTVLRM
101: TGFLEV

Arabidopsis Description

AtS40-3AtS40-3 [Source:UniProtKB/TrEMBL;Acc:A0A178UY13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.