Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78911 | Canola | nucleus | 91.3 | 100.0 |
| CDX99403 | Canola | nucleus | 92.17 | 95.5 |
| Bra012560.1-P | Field mustard | cytosol | 70.43 | 74.31 |
| AT4G18980.1 | Thale cress | cytosol | 61.74 | 66.98 |
| Bra020981.1-P | Field mustard | nucleus | 60.0 | 62.73 |
| Bra017599.1-P | Field mustard | cytosol | 46.09 | 46.49 |
| GSMUA_Achr6P26140_001 | Banana | cytosol | 39.13 | 44.12 |
| GSMUA_Achr4P15500_001 | Banana | cytosol | 40.0 | 39.66 |
| Bra030154.1-P | Field mustard | nucleus | 46.09 | 38.97 |
| Zm00001d011752_P001 | Maize | cytosol | 30.43 | 38.89 |
| Bra010823.1-P | Field mustard | nucleus | 46.09 | 38.69 |
| TraesCS3D01G283600.1 | Wheat | cytosol, plastid | 32.17 | 38.14 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 33.04 | 38.0 |
| Bra005436.1-P | Field mustard | cytosol | 40.87 | 37.01 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 37.39 | 36.44 |
| Zm00001d043586_P001 | Maize | cytosol, plastid | 28.7 | 35.11 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 35.65 | 34.17 |
| GSMUA_Achr2P09490_001 | Banana | cytosol | 34.78 | 33.33 |
| GSMUA_Achr7P24940_001 | Banana | cytosol | 33.91 | 32.23 |
| Os01t0727700-00 | Rice | cytosol | 30.43 | 32.11 |
| GSMUA_Achr9P05760_001 | Banana | nucleus | 33.91 | 31.45 |
| GSMUA_Achr1P11590_001 | Banana | cytosol | 31.3 | 31.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.57 | 30.09 |
| Os05t0518800-00 | Rice | cytosol, mitochondrion, nucleus | 31.3 | 27.69 |
| Zm00001d010814_P001 | Maize | cytosol | 33.04 | 27.54 |
| KXG33366 | Sorghum | cytosol | 34.78 | 27.21 |
| TraesCS1B01G351400.1 | Wheat | cytosol | 30.43 | 25.74 |
| Os01t0748300-00 | Rice | cytosol | 33.91 | 25.16 |
| EES18553 | Sorghum | cytosol | 35.65 | 25.15 |
| Zm00001d043455_P001 | Maize | cytosol | 32.17 | 24.67 |
| Os05t0531100-01 | Rice | nucleus | 30.43 | 24.65 |
| TraesCS1B01G365200.1 | Wheat | nucleus | 29.57 | 24.46 |
| TraesCS1A01G351000.1 | Wheat | nucleus | 28.7 | 24.26 |
| TraesCS1A01G339100.1 | Wheat | cytosol | 31.3 | 24.16 |
| Bra032329.1-P | Field mustard | nucleus | 42.61 | 23.79 |
| Zm00001d038814_P001 | Maize | cytosol, nucleus, plastid | 28.7 | 22.0 |
| HORVU1Hr1G076310.1 | Barley | nucleus | 28.7 | 21.71 |
| KXG22361 | Sorghum | nucleus | 26.96 | 18.9 |
| Bra021903.1-P | Field mustard | nucleus | 27.83 | 14.75 |
Protein Annotations
| EnsemblPlants:Bra013366.1 | EnsemblPlants:Bra013366.1-P | EnsemblPlantsGene:Bra013366 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF7 |
| PFAM:PF04520 | SEG:seg | UniParc:UPI000254644D | UniProt:M4DA56 | MapMan:35.2 | : |
Description
AT5G45630 (E=6e-021) | unknown protein
Coordinates
chrA01:+:5225444..5225791
Molecular Weight (calculated)
13335.6 Da
IEP (calculated)
4.742
GRAVY (calculated)
-0.935
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEFQESEI TFSDEYFMSN NVKSSNKENT KRQPMATEKK SSPVRIPSRT ILPCTVEDED EDEEEEEKES ITPPHVIIGK RRTEAQMAFS FCTLKGRDLS
101: RHRNSVLRMT GFLEV
101: RHRNSVLRMT GFLEV
001: MSEEFQESEV IFSDESFTRK DNKISHNNEN YERKSTEKDK ISSPVRIPSR TTIRYTEEEG EMTPPHVIIE KRRTEAQMAF SFCTLKGRDL SRHRNTVLRM
101: TGFLEV
101: TGFLEV
Arabidopsis Description
AtS40-3AtS40-3 [Source:UniProtKB/TrEMBL;Acc:A0A178UY13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.