Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012650.1-P | |
| Bra018081.1-P | |
| Bra033769.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29640.1 | Bra018081.1-P | AT3G48150.1 | 21798944 |
| AT1G29640.1 | Bra033769.1-P | AT3G48150.1 | 21798944 |
| AT1G29640.1 | Bra012650.1-P | AT4G17680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90198 | Canola | cytosol | 97.08 | 95.0 |
| AT1G29640.1 | Thale cress | cytosol | 62.77 | 61.43 |
| KRH13257 | Soybean | mitochondrion | 21.9 | 61.22 |
| Bra030154.1-P | Field mustard | nucleus | 56.93 | 57.35 |
| Bra005436.1-P | Field mustard | cytosol | 45.26 | 48.82 |
| Bra013366.1-P | Field mustard | nucleus | 38.69 | 46.09 |
| GSMUA_Achr6P26140_001 | Banana | cytosol | 32.12 | 43.14 |
| Bra012560.1-P | Field mustard | cytosol | 34.31 | 43.12 |
| Bra020981.1-P | Field mustard | nucleus | 34.31 | 42.73 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 29.93 | 41.0 |
| KRH21137 | Soybean | cytosol | 34.31 | 39.83 |
| Zm00001d043586_P001 | Maize | cytosol, plastid | 27.01 | 39.36 |
| Zm00001d011752_P001 | Maize | cytosol | 25.55 | 38.89 |
| Bra032329.1-P | Field mustard | nucleus | 57.66 | 38.35 |
| GSMUA_Achr4P15500_001 | Banana | cytosol | 32.12 | 37.93 |
| Bra017599.1-P | Field mustard | cytosol | 30.66 | 36.84 |
| TraesCS3D01G283600.1 | Wheat | cytosol, plastid | 25.55 | 36.08 |
| GSMUA_Achr2P09490_001 | Banana | cytosol | 31.39 | 35.83 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 30.66 | 35.59 |
| GSMUA_Achr9P05760_001 | Banana | nucleus | 32.12 | 35.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.2 | 35.4 |
| KRH71505 | Soybean | cytosol | 25.55 | 35.35 |
| GSMUA_Achr1P11590_001 | Banana | cytosol | 29.2 | 34.78 |
| PGSC0003DMT400035020 | Potato | nucleus | 35.04 | 34.29 |
| PGSC0003DMT400035019 | Potato | nucleus | 34.31 | 33.57 |
| Os01t0727700-00 | Rice | cytosol | 26.28 | 33.03 |
| GSMUA_Achr7P24940_001 | Banana | cytosol | 27.74 | 31.41 |
| Zm00001d010814_P001 | Maize | cytosol | 31.39 | 31.16 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 27.01 | 30.83 |
| Solyc03g005890.1.1 | Tomato | nucleus | 30.66 | 30.43 |
| Os05t0518800-00 | Rice | cytosol, mitochondrion, nucleus | 28.47 | 30.0 |
| TraesCS1B01G351400.1 | Wheat | cytosol | 28.47 | 28.68 |
| KRH11111 | Soybean | nucleus | 35.77 | 28.32 |
| Os05t0531100-01 | Rice | nucleus | 29.2 | 28.17 |
| TraesCS1B01G365200.1 | Wheat | nucleus | 28.47 | 28.06 |
| TraesCS1A01G351000.1 | Wheat | nucleus | 27.74 | 27.94 |
| KXG33366 | Sorghum | cytosol | 29.2 | 27.21 |
| Os01t0748300-00 | Rice | cytosol | 30.66 | 27.1 |
| HORVU1Hr1G076310.1 | Barley | nucleus | 29.93 | 26.97 |
| TraesCS1A01G339100.1 | Wheat | cytosol | 29.2 | 26.85 |
| Zm00001d043455_P001 | Maize | cytosol | 29.2 | 26.67 |
| EES18553 | Sorghum | cytosol | 29.93 | 25.15 |
| KXG22361 | Sorghum | nucleus | 26.28 | 21.95 |
| Bra021903.1-P | Field mustard | nucleus | 32.85 | 20.74 |
| Zm00001d038814_P001 | Maize | cytosol, nucleus, plastid | 21.9 | 20.0 |
Protein Annotations
| EnsemblPlants:Bra010823.1 | EnsemblPlants:Bra010823.1-P | EnsemblPlantsGene:Bra010823 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF7 |
| PFAM:PF04520 | SEG:seg | UniParc:UPI00025470E5 | UniProt:M4D2X0 | MapMan:35.2 | : |
Description
AT1G29640 (E=2e-031) | unknown protein
Coordinates
chrA08:+:16655619..16656032
Molecular Weight (calculated)
15603.3 Da
IEP (calculated)
8.494
GRAVY (calculated)
-0.795
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEFDESEI IFSDSFFPIR RREDVIEKEN RPVNFRENSE TKMRNTSRLS KTTPLPSSPA AFSSSSLPVN IPGRKYSSED EEYSEDGGRR MVPPHLIVGR
101: RIESGQMAFS VCTGQGRTLK GRDLSRVRNS VLRPVFD
101: RIESGQMAFS VCTGQGRTLK GRDLSRVRNS VLRPVFD
001: MSEEFDESEI IFSDNYFPIR RREDGNEKEN NRPVDFRENS ERVWNKSSRR SKTTPLPSAV TAFSSSLPVN IPMRRYSTEE EYSDDDGGRK MIPPHLIVGR
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA
Arabidopsis Description
At1g29640 [Source:UniProtKB/TrEMBL;Acc:Q9C7N7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.