Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13257 | Soybean | mitochondrion | 13.33 | 40.82 |
| Zm00001d043586_P001 | Maize | cytosol, plastid | 25.33 | 40.43 |
| Zm00001d011752_P001 | Maize | cytosol | 23.33 | 38.89 |
| Os05t0518800-00 | Rice | cytosol, mitochondrion, nucleus | 33.33 | 38.46 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 25.33 | 38.0 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 29.33 | 37.29 |
| Zm00001d010814_P001 | Maize | cytosol | 33.33 | 36.23 |
| KXG22361 | Sorghum | nucleus | 39.33 | 35.98 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 28.0 | 35.0 |
| TraesCS1B01G351400.1 | Wheat | cytosol | 30.0 | 33.09 |
| CDY09268 | Canola | nucleus | 24.0 | 32.73 |
| HORVU1Hr1G076310.1 | Barley | nucleus | 32.67 | 32.24 |
| AT4G18980.1 | Thale cress | cytosol | 22.67 | 32.08 |
| CDX76503 | Canola | nucleus | 23.33 | 31.82 |
| Bra020981.1-P | Field mustard | nucleus | 23.33 | 31.82 |
| CDX94683 | Canola | cytosol | 28.67 | 31.62 |
| CDX94684 | Canola | cytosol | 28.67 | 31.62 |
| TraesCS1A01G339100.1 | Wheat | cytosol | 30.67 | 30.87 |
| Bra017599.1-P | Field mustard | cytosol | 23.33 | 30.7 |
| CDY72609 | Canola | cytosol | 23.33 | 30.7 |
| AT5G45630.1 | Thale cress | nucleus | 23.33 | 30.7 |
| Zm00001d043455_P001 | Maize | cytosol | 30.67 | 30.67 |
| CDX78911 | Canola | nucleus | 21.33 | 30.48 |
| CDY68974 | Canola | nucleus | 27.33 | 30.15 |
| CDX99403 | Canola | nucleus | 22.0 | 29.73 |
| Bra030154.1-P | Field mustard | nucleus | 26.67 | 29.41 |
| Bra013366.1-P | Field mustard | nucleus | 22.0 | 28.7 |
| CDX98601 | Canola | cytosol | 20.67 | 28.44 |
| Bra012560.1-P | Field mustard | cytosol | 20.67 | 28.44 |
| CDX84328 | Canola | cytosol | 24.0 | 28.35 |
| CDX99846 | Canola | cytosol | 26.0 | 28.26 |
| CDY01576 | Canola | nucleus | 20.67 | 28.18 |
| AT1G29640.1 | Thale cress | cytosol | 26.0 | 27.86 |
| CDY26321 | Canola | nucleus | 25.33 | 27.54 |
| CDY17236 | Canola | cytosol | 22.67 | 26.77 |
| Bra005436.1-P | Field mustard | cytosol | 22.67 | 26.77 |
| AT2G34340.1 | Thale cress | nucleus | 24.0 | 26.47 |
| CDY35299 | Canola | nucleus | 23.33 | 25.55 |
| KRH21137 | Soybean | cytosol | 20.0 | 25.42 |
| CDX90198 | Canola | cytosol | 22.67 | 24.29 |
| KRH71505 | Soybean | cytosol | 16.0 | 24.24 |
| CDY72186 | Canola | cytosol | 22.67 | 23.94 |
| CDY43682 | Canola | cytosol | 22.67 | 23.94 |
| Solyc03g005890.1.1 | Tomato | nucleus | 22.0 | 23.91 |
| PGSC0003DMT400035020 | Potato | nucleus | 21.33 | 22.86 |
| PGSC0003DMT400035019 | Potato | nucleus | 20.67 | 22.14 |
| Bra010823.1-P | Field mustard | nucleus | 20.0 | 21.9 |
| KRH11111 | Soybean | nucleus | 20.0 | 17.34 |
| Bra032329.1-P | Field mustard | nucleus | 22.67 | 16.5 |
| Bra021903.1-P | Field mustard | nucleus | 14.0 | 9.68 |
Protein Annotations
| EnsemblPlants:Zm00001d038814_P001 | EnsemblPlants:Zm00001d038814_T001 | EnsemblPlantsGene:Zm00001d038814 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF20 |
| PFAM:PF04520 | ProteinID:AQK87908.1 | SEG:seg | UniParc:UPI0008459F96 | UniProt:A0A1D6MAW0 | MapMan:35.2 |
Description
AtS40-3
Coordinates
chr6:-:165172005..165172457
Molecular Weight (calculated)
16445.4 Da
IEP (calculated)
5.050
GRAVY (calculated)
-0.535
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MCLAPPAAAM ATEELQEGDE LCPDYYHSSD DGRGQRRLQP HRWSGRKPCC LRTDDENAAC KVRRPGSLSA PVAIVVPVTA VATTTEDDDD EAAFVPPHVA
101: LEARRRRSEG RVASSMCEGL GRTLKGRDLQ FVRTAVLRMT GFIESCPDED
101: LEARRRRSEG RVASSMCEGL GRTLKGRDLQ FVRTAVLRMT GFIESCPDED
001: MEGGEEFQEE EVWSVLRESE TQGPEMKMSK SNNLFSASSS SSARYIPKGN EVSGGAKQSS APMNIPDWSK VYGYSKKNTS SHLHSWAIDD DDEGSMVPPH
101: ELVAKRLART QISSFSMCEG IGRTLKGRDL SKTRNAVLTR TGFLESNITS SSTTSPP
101: ELVAKRLART QISSFSMCEG IGRTLKGRDL SKTRNAVLTR TGFLESNITS SSTTSPP
Arabidopsis Description
Protein of unknown function, DUF584 [Source:TAIR;Acc:AT4G21970]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.