CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012560.1-P	Field mustard	cytosol	100.0	100.0
CDY01576	Canola	nucleus	89.91	89.09
CDX78911	Canola	nucleus	71.56	74.29
CDX99403	Canola	nucleus	73.39	72.07
AT4G18980.1	Thale cress	cytosol	67.89	69.81
CDX76503	Canola	nucleus	66.06	65.45
CDY09268	Canola	nucleus	66.06	65.45
CDY72609	Canola	cytosol	45.87	43.86
GSMUA_Achr6P26140_001	Banana	cytosol	39.45	42.16
TraesCS3D01G283600.1	Wheat	cytosol, plastid	35.78	40.21
CDY35299	Canola	nucleus	49.54	39.42
CDX84328	Canola	cytosol	44.95	38.58
GSMUA_Achr7P24930_001	Banana	plastid	34.86	38.0
GSMUA_Achr4P15500_001	Banana	cytosol	40.37	37.93
CDY17236	Canola	cytosol	44.04	37.8
Zm00001d043586_P001	Maize	cytosol, plastid	32.11	37.23
CDX90198	Canola	cytosol	47.71	37.14
CDY26321	Canola	nucleus	45.87	36.23
GSMUA_Achr3P31830_001	Banana	nucleus	38.53	35.59
Zm00001d011752_P001	Maize	cytosol	29.36	35.56
CDX99846	Canola	cytosol	44.95	35.51
CDY68974	Canola	nucleus	44.04	35.29
CDX94684	Canola	cytosol	44.04	35.29
CDX94683	Canola	cytosol	44.04	35.29
GSMUA_Achr2P09490_001	Banana	cytosol	37.61	34.17
GSMUA_Achr9P05750_001	Banana	cytosol	37.61	34.17
Os01t0727700-00	Rice	cytosol	33.95	33.95
GSMUA_Achr7P24940_001	Banana	cytosol	37.61	33.88
CDY43682	Canola	cytosol	44.04	33.8
CDY72186	Canola	cytosol	44.04	33.8
GSMUA_AchrUn_...	Banana	nucleus	33.03	31.86
GSMUA_Achr9P05760_001	Banana	nucleus	33.95	29.84
Os05t0518800-00	Rice	cytosol, mitochondrion, nucleus	33.95	28.46
GSMUA_Achr1P11590_001	Banana	cytosol	27.52	26.09
KXG33366	Sorghum	cytosol	34.86	25.85
TraesCS1B01G365200.1	Wheat	nucleus	32.11	25.18
TraesCS1A01G351000.1	Wheat	nucleus	31.19	25.0
TraesCS1B01G351400.1	Wheat	cytosol	29.36	23.53
Zm00001d010814_P001	Maize	cytosol	29.36	23.19
TraesCS1A01G339100.1	Wheat	cytosol	31.19	22.82
Zm00001d043455_P001	Maize	cytosol	31.19	22.67
Os01t0748300-00	Rice	cytosol	31.19	21.94
Os05t0531100-01	Rice	nucleus	28.44	21.83
EES18553	Sorghum	cytosol	32.11	21.47
HORVU1Hr1G076310.1	Barley	nucleus	29.36	21.05
Zm00001d038814_P001	Maize	cytosol, nucleus, plastid	28.44	20.67
KXG22361	Sorghum	nucleus	28.44	18.9

Protein Annotations

EnsemblPlants:CDX98601	EnsemblPlantsGene:GSBRNA2T00106632001	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF7	PFAM:PF04520
ProteinID:CDX98601	ProteinID:CDX98601.1	SEG:seg	UniParc:UPI00025403D9	MapMan:35.2	:

Description

BnaA03g43860D

Coordinates

chrLK031906:+:57274..57603

Molecular Weight (calculated)

12760.1 Da

IEP (calculated)

6.543

GRAVY (calculated)

-0.933

Length

109 amino acids

Sequence
(BLAST)

001: MSEELQESEV IFSDEYYTRN KNKSSIDENN KTKTTAMEKK SSPVRIPSRS IFRRAEEEEE EEGEITPPHI IIGKRRMEAQ MAFSFCTLKG RELSRHRNSV
101: LRMTGFLEV

Best Arabidopsis Sequence Match ( AT4G18980.1 )
(BLAST)

001: MSEEFQESEV IFSDESFTRK DNKISHNNEN YERKSTEKDK ISSPVRIPSR TTIRYTEEEG EMTPPHVIIE KRRTEAQMAF SFCTLKGRDL SRHRNTVLRM
101: TGFLEV

Arabidopsis Description

AtS40-3AtS40-3 [Source:UniProtKB/TrEMBL;Acc:A0A178UY13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.