Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33366 | Sorghum | cytosol | 52.67 | 53.74 |
| KRH13257 | Soybean | mitochondrion | 14.67 | 44.9 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 28.67 | 43.0 |
| Zm00001d011752_P001 | Maize | cytosol | 25.33 | 42.22 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 32.67 | 41.53 |
| Zm00001d043586_P001 | Maize | cytosol, plastid | 25.33 | 40.43 |
| Os01t0748300-00 | Rice | cytosol | 40.0 | 38.71 |
| Zm00001d010814_P001 | Maize | cytosol | 34.67 | 37.68 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 30.0 | 37.5 |
| CDX94683 | Canola | cytosol | 33.33 | 36.76 |
| CDX94684 | Canola | cytosol | 33.33 | 36.76 |
| CDY26321 | Canola | nucleus | 33.33 | 36.23 |
| CDY68974 | Canola | nucleus | 32.67 | 36.03 |
| CDX99846 | Canola | cytosol | 32.67 | 35.51 |
| Bra030154.1-P | Field mustard | nucleus | 32.0 | 35.29 |
| AT4G18980.1 | Thale cress | cytosol | 24.67 | 34.91 |
| CDX78911 | Canola | nucleus | 24.0 | 34.29 |
| CDX99403 | Canola | nucleus | 25.33 | 34.23 |
| CDX84328 | Canola | cytosol | 28.67 | 33.86 |
| Bra005436.1-P | Field mustard | cytosol | 28.0 | 33.07 |
| CDY17236 | Canola | cytosol | 28.0 | 33.07 |
| KRH21137 | Soybean | cytosol | 26.0 | 33.05 |
| CDY35299 | Canola | nucleus | 30.0 | 32.85 |
| Bra013366.1-P | Field mustard | nucleus | 24.67 | 32.17 |
| AT1G29640.1 | Thale cress | cytosol | 30.0 | 32.14 |
| CDY09268 | Canola | nucleus | 23.33 | 31.82 |
| Bra020981.1-P | Field mustard | nucleus | 23.33 | 31.82 |
| CDX76503 | Canola | nucleus | 23.33 | 31.82 |
| CDX90198 | Canola | cytosol | 29.33 | 31.43 |
| KRH71505 | Soybean | cytosol | 20.67 | 31.31 |
| Bra012560.1-P | Field mustard | cytosol | 22.67 | 31.19 |
| CDX98601 | Canola | cytosol | 22.67 | 31.19 |
| AT2G34340.1 | Thale cress | nucleus | 28.0 | 30.88 |
| CDY72609 | Canola | cytosol | 23.33 | 30.7 |
| AT5G45630.1 | Thale cress | nucleus | 23.33 | 30.7 |
| Zm00001d038814_P001 | Maize | cytosol, nucleus, plastid | 30.67 | 30.67 |
| CDY01576 | Canola | nucleus | 22.0 | 30.0 |
| Bra017599.1-P | Field mustard | cytosol | 22.67 | 29.82 |
| CDY72186 | Canola | cytosol | 28.0 | 29.58 |
| CDY43682 | Canola | cytosol | 28.0 | 29.58 |
| Bra010823.1-P | Field mustard | nucleus | 26.67 | 29.2 |
| PGSC0003DMT400035020 | Potato | nucleus | 25.33 | 27.14 |
| PGSC0003DMT400035019 | Potato | nucleus | 24.67 | 26.43 |
| Solyc03g005890.1.1 | Tomato | nucleus | 22.0 | 23.91 |
| KRH11111 | Soybean | nucleus | 26.67 | 23.12 |
| Bra032329.1-P | Field mustard | nucleus | 30.67 | 22.33 |
| Bra021903.1-P | Field mustard | nucleus | 18.0 | 12.44 |
Protein Annotations
| EnsemblPlants:Zm00001d043455_P001 | EnsemblPlants:Zm00001d043455_T001 | EnsemblPlantsGene:Zm00001d043455 | EntrezGene:103651203 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 |
| PANTHER:PTHR33083:SF9 | PFAM:PF04520 | ProteinID:ONM38092.1 | SEG:seg | UniParc:UPI00022156FD | UniProt:A0A1D6NC51 |
| MapMan:35.2 | : | : | : | : | : |
Description
Nuclear protein
Coordinates
chr3:-:200478527..200479283
Molecular Weight (calculated)
16604.4 Da
IEP (calculated)
7.016
GRAVY (calculated)
-0.813
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEFQEADML WPDVALAHNH GYHRPADSSH GRCRQHLTDQ PQQPRPGAAV VHPLQSSPVR IPSMPPMGPR PTSRGSWTRS YKEEEDDDDD GAEEVGVVPP
101: HVLAARRCGE ERRVASSVCV GHGRTLKGRD LRAVRNAVLH MTGFLSSSDK
101: HVLAARRCGE ERRVASSVCV GHGRTLKGRD LRAVRNAVLH MTGFLSSSDK
001: MSEEFDESEI IFSDNYFPIR RREDGNEKEN NRPVDFRENS ERVWNKSSRR SKTTPLPSAV TAFSSSLPVN IPMRRYSTEE EYSDDDGGRK MIPPHLIVGR
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA
Arabidopsis Description
At1g29640 [Source:UniProtKB/TrEMBL;Acc:Q9C7N7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.