Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78911 | Canola | nucleus | 92.79 | 98.1 |
| Bra013366.1-P | Field mustard | nucleus | 95.5 | 92.17 |
| CDX98601 | Canola | cytosol | 72.07 | 73.39 |
| CDY01576 | Canola | nucleus | 72.07 | 72.73 |
| AT4G18980.1 | Thale cress | cytosol | 62.16 | 65.09 |
| CDX76503 | Canola | nucleus | 62.16 | 62.73 |
| CDY09268 | Canola | nucleus | 61.26 | 61.82 |
| CDY72609 | Canola | cytosol | 45.95 | 44.74 |
| GSMUA_Achr6P26140_001 | Banana | cytosol | 40.54 | 44.12 |
| CDY35299 | Canola | nucleus | 51.35 | 41.61 |
| CDX90198 | Canola | cytosol | 52.25 | 41.43 |
| CDY26321 | Canola | nucleus | 48.65 | 39.13 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 35.14 | 39.0 |
| Zm00001d011752_P001 | Maize | cytosol | 31.53 | 38.89 |
| GSMUA_Achr4P15500_001 | Banana | cytosol | 40.54 | 38.79 |
| CDX84328 | Canola | cytosol | 44.14 | 38.58 |
| CDX99846 | Canola | cytosol | 47.75 | 38.41 |
| CDY68974 | Canola | nucleus | 46.85 | 38.24 |
| CDX94683 | Canola | cytosol | 46.85 | 38.24 |
| CDX94684 | Canola | cytosol | 46.85 | 38.24 |
| CDY17236 | Canola | cytosol | 43.24 | 37.8 |
| Zm00001d043586_P001 | Maize | cytosol, plastid | 30.63 | 36.17 |
| TraesCS3D01G283600.1 | Wheat | cytosol, plastid | 31.53 | 36.08 |
| CDY43682 | Canola | cytosol | 44.14 | 34.51 |
| CDY72186 | Canola | cytosol | 44.14 | 34.51 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 36.04 | 33.9 |
| GSMUA_Achr2P09490_001 | Banana | cytosol | 36.04 | 33.33 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 36.04 | 33.33 |
| GSMUA_Achr9P05760_001 | Banana | nucleus | 36.94 | 33.06 |
| GSMUA_Achr7P24940_001 | Banana | cytosol | 35.14 | 32.23 |
| GSMUA_Achr1P11590_001 | Banana | cytosol | 31.53 | 30.43 |
| Os01t0727700-00 | Rice | cytosol | 29.73 | 30.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.73 | 29.2 |
| Zm00001d010814_P001 | Maize | cytosol | 35.14 | 28.26 |
| Os05t0518800-00 | Rice | cytosol, mitochondrion, nucleus | 32.43 | 27.69 |
| KXG33366 | Sorghum | cytosol | 36.04 | 27.21 |
| TraesCS1B01G351400.1 | Wheat | cytosol | 33.33 | 27.21 |
| Os01t0748300-00 | Rice | cytosol | 36.04 | 25.81 |
| TraesCS1A01G339100.1 | Wheat | cytosol | 34.23 | 25.5 |
| Os05t0531100-01 | Rice | nucleus | 32.43 | 25.35 |
| Zm00001d043455_P001 | Maize | cytosol | 34.23 | 25.33 |
| TraesCS1B01G365200.1 | Wheat | nucleus | 30.63 | 24.46 |
| TraesCS1A01G351000.1 | Wheat | nucleus | 29.73 | 24.26 |
| EES18553 | Sorghum | cytosol | 35.14 | 23.93 |
| Zm00001d038814_P001 | Maize | cytosol, nucleus, plastid | 29.73 | 22.0 |
| HORVU1Hr1G076310.1 | Barley | nucleus | 28.83 | 21.05 |
| KXG22361 | Sorghum | nucleus | 26.13 | 17.68 |
Protein Annotations
| EnsemblPlants:CDX99403 | EnsemblPlantsGene:GSBRNA2T00107728001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF7 | PFAM:PF04520 |
| ProteinID:CDX99403 | ProteinID:CDX99403.1 | UniParc:UPI0004EAFDC6 | MapMan:35.2 | : | : |
Description
BnaC01g11490D
Coordinates
chrLK031910:-:473409..473744
Molecular Weight (calculated)
12775.1 Da
IEP (calculated)
6.529
GRAVY (calculated)
-0.814
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEFQESEI TFSDEYFMSN NVKSSNKENT KRQPMATEKK SSPVRIPSRT ILPCTVEEED EEGKESITPP HVIIGKRRTE AQMAFSFCTL KGRDLSRHRN
101: SVLRMTGFLE V
101: SVLRMTGFLE V
001: MSEEFQESEV IFSDESFTRK DNKISHNNEN YERKSTEKDK ISSPVRIPSR TTIRYTEEEG EMTPPHVIIE KRRTEAQMAF SFCTLKGRDL SRHRNTVLRM
101: TGFLEV
101: TGFLEV
Arabidopsis Description
AtS40-3AtS40-3 [Source:UniProtKB/TrEMBL;Acc:A0A178UY13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.