CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99403	Canola	nucleus	98.1	92.79
Bra013366.1-P	Field mustard	nucleus	100.0	91.3
CDX98601	Canola	cytosol	74.29	71.56
CDY01576	Canola	nucleus	73.33	70.0
AT4G18980.1	Thale cress	cytosol	66.67	66.04
CDX76503	Canola	nucleus	63.81	60.91
CDY09268	Canola	nucleus	62.86	60.0
GSMUA_Achr6P26140_001	Banana	cytosol	42.86	44.12
CDY72609	Canola	cytosol	46.67	42.98
GSMUA_Achr4P15500_001	Banana	cytosol	42.86	38.79
CDY35299	Canola	nucleus	50.48	38.69
CDX90198	Canola	cytosol	51.43	38.57
GSMUA_Achr7P24930_001	Banana	plastid	35.24	37.0
CDY26321	Canola	nucleus	48.57	36.96
CDX94684	Canola	cytosol	47.62	36.76
CDY68974	Canola	nucleus	47.62	36.76
CDX94683	Canola	cytosol	47.62	36.76
Zm00001d011752_P001	Maize	cytosol	31.43	36.67
CDX99846	Canola	cytosol	47.62	36.23
CDX84328	Canola	cytosol	43.81	36.22
TraesCS3D01G283600.1	Wheat	cytosol, plastid	33.33	36.08
CDY17236	Canola	cytosol	42.86	35.43
GSMUA_Achr3P31830_001	Banana	nucleus	39.05	34.75
GSMUA_Achr9P05750_001	Banana	cytosol	39.05	34.17
Zm00001d043586_P001	Maize	cytosol, plastid	29.52	32.98
GSMUA_Achr2P09490_001	Banana	cytosol	37.14	32.5
CDY43682	Canola	cytosol	43.81	32.39
CDY72186	Canola	cytosol	43.81	32.39
GSMUA_Achr7P24940_001	Banana	cytosol	37.14	32.23
GSMUA_Achr9P05760_001	Banana	nucleus	37.14	31.45
GSMUA_Achr1P11590_001	Banana	cytosol	33.33	30.43
Os01t0727700-00	Rice	cytosol	30.48	29.36
GSMUA_AchrUn_...	Banana	nucleus	30.48	28.32
Os05t0518800-00	Rice	cytosol, mitochondrion, nucleus	34.29	27.69
KXG33366	Sorghum	cytosol	38.1	27.21
Zm00001d010814_P001	Maize	cytosol	35.24	26.81
TraesCS1B01G351400.1	Wheat	cytosol	33.33	25.74
Os05t0531100-01	Rice	nucleus	33.33	24.65
Os01t0748300-00	Rice	cytosol	36.19	24.52
TraesCS1B01G365200.1	Wheat	nucleus	32.38	24.46
TraesCS1A01G351000.1	Wheat	nucleus	31.43	24.26
TraesCS1A01G339100.1	Wheat	cytosol	34.29	24.16
Zm00001d043455_P001	Maize	cytosol	34.29	24.0
EES18553	Sorghum	cytosol	36.19	23.31
HORVU1Hr1G076310.1	Barley	nucleus	31.43	21.71
Zm00001d038814_P001	Maize	cytosol, nucleus, plastid	30.48	21.33
KXG22361	Sorghum	nucleus	27.62	17.68

Protein Annotations

EnsemblPlants:CDX78911	EnsemblPlantsGene:GSBRNA2T00131398001	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF7	PFAM:PF04520
ProteinID:CDX78911	ProteinID:CDX78911.1	UniParc:UPI0004EDB623	MapMan:35.2	:	:

Description

BnaA01g09780D

Coordinates

chrLK031816:+:771778..772128

Molecular Weight (calculated)

12116.5 Da

IEP (calculated)

9.332

GRAVY (calculated)

-0.764

Length

105 amino acids

Sequence
(BLAST)

001: MSEEFQESEI TFSDEYFMSN NVKSSNKENT KRQPMATEKK SSPVRIPSRT ILPCTEEKES ITPPHVIIGK RRTEAQMAFS FCTLKGRDLS RHRNSVLRMT
101: GFLEV

Best Arabidopsis Sequence Match ( AT4G18980.1 )
(BLAST)

001: MSEEFQESEV IFSDESFTRK DNKISHNNEN YERKSTEKDK ISSPVRIPSR TTIRYTEEEG EMTPPHVIIE KRRTEAQMAF SFCTLKGRDL SRHRNTVLRM
101: TGFLEV

Arabidopsis Description

AtS40-3AtS40-3 [Source:UniProtKB/TrEMBL;Acc:A0A178UY13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.