Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G351000.1 | Wheat | nucleus | 84.17 | 86.03 |
| Os05t0531100-01 | Rice | nucleus | 46.04 | 45.07 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 32.37 | 45.0 |
| KRH13257 | Soybean | mitochondrion | 15.11 | 42.86 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 35.97 | 42.37 |
| Zm00001d010814_P001 | Maize | cytosol | 41.73 | 42.03 |
| TraesCS3D01G283600.1 | Wheat | cytosol, plastid | 28.06 | 40.21 |
| EES18553 | Sorghum | cytosol | 42.45 | 36.2 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 30.22 | 35.0 |
| AT4G18980.1 | Thale cress | cytosol | 26.62 | 34.91 |
| CDX84328 | Canola | cytosol | 30.94 | 33.86 |
| CDY68974 | Canola | nucleus | 32.37 | 33.09 |
| CDY09268 | Canola | nucleus | 25.9 | 32.73 |
| Bra020981.1-P | Field mustard | nucleus | 25.9 | 32.73 |
| CDX76503 | Canola | nucleus | 25.9 | 32.73 |
| AT5G45630.1 | Thale cress | nucleus | 26.62 | 32.46 |
| CDX78911 | Canola | nucleus | 24.46 | 32.38 |
| CDX94683 | Canola | cytosol | 31.65 | 32.35 |
| CDX94684 | Canola | cytosol | 31.65 | 32.35 |
| Bra030154.1-P | Field mustard | nucleus | 31.65 | 32.35 |
| TraesCS1B01G351400.1 | Wheat | cytosol | 31.65 | 32.35 |
| CDY17236 | Canola | cytosol | 29.5 | 32.28 |
| Bra005436.1-P | Field mustard | cytosol | 29.5 | 32.28 |
| CDX98601 | Canola | cytosol | 25.18 | 32.11 |
| Bra012560.1-P | Field mustard | cytosol | 25.18 | 32.11 |
| CDY43682 | Canola | cytosol | 31.65 | 30.99 |
| CDY72186 | Canola | cytosol | 31.65 | 30.99 |
| CDY01576 | Canola | nucleus | 24.46 | 30.91 |
| CDX90198 | Canola | cytosol | 30.94 | 30.71 |
| CDX99403 | Canola | nucleus | 24.46 | 30.63 |
| CDY26321 | Canola | nucleus | 30.22 | 30.43 |
| CDX99846 | Canola | cytosol | 30.22 | 30.43 |
| PGSC0003DMT400035020 | Potato | nucleus | 30.22 | 30.0 |
| CDY35299 | Canola | nucleus | 29.5 | 29.93 |
| CDY72609 | Canola | cytosol | 24.46 | 29.82 |
| KRH21137 | Soybean | cytosol | 25.18 | 29.66 |
| Bra013366.1-P | Field mustard | nucleus | 24.46 | 29.57 |
| KRH71505 | Soybean | cytosol | 20.86 | 29.29 |
| PGSC0003DMT400035019 | Potato | nucleus | 29.5 | 29.29 |
| Bra017599.1-P | Field mustard | cytosol | 23.74 | 28.95 |
| AT2G34340.1 | Thale cress | nucleus | 28.06 | 28.68 |
| Bra010823.1-P | Field mustard | nucleus | 28.06 | 28.47 |
| AT1G29640.1 | Thale cress | cytosol | 28.06 | 27.86 |
| Solyc03g005890.1.1 | Tomato | nucleus | 26.62 | 26.81 |
| KRH11111 | Soybean | nucleus | 24.46 | 19.65 |
| Bra032329.1-P | Field mustard | nucleus | 25.9 | 17.48 |
| Bra021903.1-P | Field mustard | nucleus | 20.14 | 12.9 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G365200.1 | EnsemblPlantsGene:TraesCS1B01G365200 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF19 | PFAM:PF04520 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:596039728..596040147
Molecular Weight (calculated)
15472.1 Da
IEP (calculated)
9.437
GRAVY (calculated)
-0.958
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQELQEADV LWPQNNSDHR RDGGHDDSVI NVDGDMAKLS SPELSAPVLV PHRKRRSRSW TTSDGSGSGN DDCSDGDVRC TNDAKRNVPP HVLAERRRRL
101: AGRSTAAYSM CSGKGRTLKG RDLRNIRNLV LRMTGFIEK
101: AGRSTAAYSM CSGKGRTLKG RDLRNIRNLV LRMTGFIEK
001: MSEEFQESEV IFSDESFTRK DNKISHNNEN YERKSTEKDK ISSPVRIPSR TTIRYTEEEG EMTPPHVIIE KRRTEAQMAF SFCTLKGRDL SRHRNTVLRM
101: TGFLEV
101: TGFLEV
Arabidopsis Description
AtS40-3AtS40-3 [Source:UniProtKB/TrEMBL;Acc:A0A178UY13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.