CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98601	Canola	cytosol	89.09	89.91
CDX78911	Canola	nucleus	70.0	73.33
CDX99403	Canola	nucleus	72.73	72.07
AT4G18980.1	Thale cress	cytosol	66.36	68.87
CDX76503	Canola	nucleus	65.45	65.45
CDY09268	Canola	nucleus	65.45	65.45
CDY72609	Canola	cytosol	43.64	42.11
GSMUA_Achr6P26140_001	Banana	cytosol	38.18	41.18
CDY35299	Canola	nucleus	49.09	39.42
TraesCS3D01G283600.1	Wheat	cytosol, plastid	33.64	38.14
CDY17236	Canola	cytosol	43.64	37.8
CDX84328	Canola	cytosol	42.73	37.01
CDX94683	Canola	cytosol	45.45	36.76
CDX94684	Canola	cytosol	45.45	36.76
CDY68974	Canola	nucleus	45.45	36.76
CDY26321	Canola	nucleus	45.45	36.23
GSMUA_Achr7P24930_001	Banana	plastid	32.73	36.0
CDX90198	Canola	cytosol	45.45	35.71
CDX99846	Canola	cytosol	44.55	35.51
GSMUA_Achr4P15500_001	Banana	cytosol	37.27	35.34
Zm00001d043586_P001	Maize	cytosol, plastid	30.0	35.11
GSMUA_Achr3P31830_001	Banana	nucleus	37.27	34.75
Zm00001d011752_P001	Maize	cytosol	27.27	33.33
GSMUA_Achr9P05750_001	Banana	cytosol	36.36	33.33
Os01t0727700-00	Rice	cytosol	32.73	33.03
GSMUA_Achr2P09490_001	Banana	cytosol	35.45	32.5
CDY43682	Canola	cytosol	41.82	32.39
CDY72186	Canola	cytosol	41.82	32.39
GSMUA_AchrUn_...	Banana	nucleus	32.73	31.86
GSMUA_Achr7P24940_001	Banana	cytosol	34.55	31.41
GSMUA_Achr9P05760_001	Banana	nucleus	30.91	27.42
Os05t0518800-00	Rice	cytosol, mitochondrion, nucleus	31.82	26.92
GSMUA_Achr1P11590_001	Banana	cytosol	26.36	25.22
KXG33366	Sorghum	cytosol	32.73	24.49
TraesCS1B01G365200.1	Wheat	nucleus	30.91	24.46
TraesCS1A01G351000.1	Wheat	nucleus	30.0	24.26
Zm00001d010814_P001	Maize	cytosol	28.18	22.46
TraesCS1B01G351400.1	Wheat	cytosol	27.27	22.06
Zm00001d043455_P001	Maize	cytosol	30.0	22.0
Os05t0531100-01	Rice	nucleus	28.18	21.83
TraesCS1A01G339100.1	Wheat	cytosol	29.09	21.48
Zm00001d038814_P001	Maize	cytosol, nucleus, plastid	28.18	20.67
Os01t0748300-00	Rice	cytosol	29.09	20.65
EES18553	Sorghum	cytosol	30.0	20.25
HORVU1Hr1G076310.1	Barley	nucleus	27.27	19.74
KXG22361	Sorghum	nucleus	27.27	18.29

Protein Annotations

EnsemblPlants:CDY01576	EnsemblPlantsGene:GSBRNA2T00112618001	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF7	PFAM:PF04520
ProteinID:CDY01576	ProteinID:CDY01576.1	SEG:seg	UniParc:UPI0004EDBB19	MapMan:35.2	:

Description

BnaC07g35660D

Coordinates

chrLK031927:+:740883..741215

Molecular Weight (calculated)

12952.3 Da

IEP (calculated)

7.520

GRAVY (calculated)

-0.998

Length

110 amino acids

Sequence
(BLAST)

001: MSELQESEVI FSDEYYTRNN KKSSNDESNK TKTTAMEKKS SPVRIPSRSI FRRTEEEEEE EEKGEMTPPH IIIGKRRIEA QMAFSFCTLK GRELSRHRNF
101: VLRMTGFLEV

Best Arabidopsis Sequence Match ( AT4G18980.1 )
(BLAST)

001: MSEEFQESEV IFSDESFTRK DNKISHNNEN YERKSTEKDK ISSPVRIPSR TTIRYTEEEG EMTPPHVIIE KRRTEAQMAF SFCTLKGRDL SRHRNTVLRM
101: TGFLEV

Arabidopsis Description

AtS40-3AtS40-3 [Source:UniProtKB/TrEMBL;Acc:A0A178UY13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.