Factsheet for GSMUA_Achr2P09490_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P00560_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P18250_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P30100_001
GSMUA_Achr8P14860_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29640.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT1G29640.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT1G29640.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT1G29640.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT1G29640.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT1G29640.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT1G29640.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P26140_001	Banana	cytosol	56.67	66.67
GSMUA_Achr9P05760_001	Banana	nucleus	58.33	56.45
KRH13257	Soybean	mitochondrion	21.67	53.06
GSMUA_Achr7P24940_001	Banana	cytosol	50.83	50.41
GSMUA_AchrUn_...	Banana	nucleus	44.17	46.9
GSMUA_Achr4P15500_001	Banana	cytosol	45.0	46.55
GSMUA_Achr1P11590_001	Banana	cytosol	40.0	41.74
GSMUA_Achr7P24930_001	Banana	plastid	34.17	41.0
GSMUA_Achr3P31830_001	Banana	nucleus	39.17	39.83
KRH71505	Soybean	cytosol	32.5	39.39
AT4G18980.1	Thale cress	cytosol	33.33	37.74
CDX98601	Canola	cytosol	34.17	37.61
Bra012560.1-P	Field mustard	cytosol	34.17	37.61
KRH21137	Soybean	cytosol	36.67	37.29
CDX78911	Canola	nucleus	32.5	37.14
Bra020981.1-P	Field mustard	nucleus	33.33	36.36
CDX76503	Canola	nucleus	33.33	36.36
CDX99403	Canola	nucleus	33.33	36.04
GSMUA_Achr9P05750_001	Banana	cytosol	35.83	35.83
CDY01576	Canola	nucleus	32.5	35.45
CDY09268	Canola	nucleus	32.5	35.45
CDX84328	Canola	cytosol	37.5	35.43
CDY35299	Canola	nucleus	40.0	35.04
CDX99846	Canola	cytosol	40.0	34.78
CDY26321	Canola	nucleus	40.0	34.78
Bra013366.1-P	Field mustard	nucleus	33.33	34.78
Bra005436.1-P	Field mustard	cytosol	36.67	34.65
CDY17236	Canola	cytosol	36.67	34.65
CDX90198	Canola	cytosol	40.0	34.29
CDX94683	Canola	cytosol	38.33	33.82
Bra030154.1-P	Field mustard	nucleus	38.33	33.82
CDY68974	Canola	nucleus	38.33	33.82
CDX94684	Canola	cytosol	38.33	33.82
AT5G45630.1	Thale cress	nucleus	31.67	33.33
AT1G29640.1	Thale cress	cytosol	38.33	32.86
CDY72186	Canola	cytosol	38.33	32.39
CDY43682	Canola	cytosol	38.33	32.39
AT2G34340.1	Thale cress	nucleus	36.67	32.35
Bra010823.1-P	Field mustard	nucleus	35.83	31.39
CDY72609	Canola	cytosol	29.17	30.7
Bra017599.1-P	Field mustard	cytosol	29.17	30.7
PGSC0003DMT400035019	Potato	nucleus	32.5	27.86
PGSC0003DMT400035020	Potato	nucleus	32.5	27.86
Solyc03g005890.1.1	Tomato	nucleus	30.0	26.09
KRH11111	Soybean	nucleus	35.0	24.28
Bra032329.1-P	Field mustard	nucleus	41.67	24.27
Bra021903.1-P	Field mustard	nucleus	25.0	13.82

Protein Annotations

EnsemblPlants:GSMUA_Achr2P09490_001	EnsemblPlants:GSMUA_Achr2T09490_001	EnsemblPlantsGene:GSMUA_Achr2G09490_001	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF7
PFAM:PF04520	SEG:seg	UniParc:UPI000295F1F3	UniProt:M0S6J0	MapMan:35.2	:

Description

DUF584 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G09490_001]

Coordinates

chr2:-:13041559..13041921

Molecular Weight (calculated)

13347.5 Da

IEP (calculated)

7.060

GRAVY (calculated)

-0.963

Length

120 amino acids

Sequence
(BLAST)

001: MEEFDEADVL WPDDARGADE LAEQQHARRG SRQKASSPVE IPSRPRAAHR TIRDGRDDAK SSSGDGDDDG SGDHRVPPHI IVARRKTTFS VCVGDGRTLK
101: GRELCHVRNS ILRMTGFLER

Best Arabidopsis Sequence Match ( AT1G29640.1 )
(BLAST)

001: MSEEFDESEI IFSDNYFPIR RREDGNEKEN NRPVDFRENS ERVWNKSSRR SKTTPLPSAV TAFSSSLPVN IPMRRYSTEE EYSDDDGGRK MIPPHLIVGR
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA

Arabidopsis Description

At1g29640 [Source:UniProtKB/TrEMBL;Acc:Q9C7N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.