Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76503 | Canola | nucleus | 99.09 | 99.09 |
| Bra012560.1-P | Field mustard | cytosol | 65.45 | 66.06 |
| AT4G18980.1 | Thale cress | cytosol | 60.91 | 63.21 |
| Bra013366.1-P | Field mustard | nucleus | 62.73 | 60.0 |
| Bra017599.1-P | Field mustard | cytosol | 50.0 | 48.25 |
| GSMUA_Achr6P26140_001 | Banana | cytosol | 40.0 | 43.14 |
| Bra030154.1-P | Field mustard | nucleus | 48.18 | 38.97 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 34.55 | 38.0 |
| TraesCS3D01G283600.1 | Wheat | cytosol, plastid | 32.73 | 37.11 |
| Bra005436.1-P | Field mustard | cytosol | 41.82 | 36.22 |
| GSMUA_Achr4P15500_001 | Banana | cytosol | 38.18 | 36.21 |
| Zm00001d011752_P001 | Maize | cytosol | 29.09 | 35.56 |
| Zm00001d043586_P001 | Maize | cytosol, plastid | 30.0 | 35.11 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 37.27 | 34.75 |
| GSMUA_Achr7P24940_001 | Banana | cytosol | 38.18 | 34.71 |
| Bra010823.1-P | Field mustard | nucleus | 42.73 | 34.31 |
| GSMUA_Achr2P09490_001 | Banana | cytosol | 36.36 | 33.33 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 36.36 | 33.33 |
| Os01t0727700-00 | Rice | cytosol | 31.82 | 32.11 |
| GSMUA_Achr1P11590_001 | Banana | cytosol | 32.73 | 31.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.82 | 30.97 |
| GSMUA_Achr9P05760_001 | Banana | nucleus | 33.64 | 29.84 |
| Os05t0518800-00 | Rice | cytosol, mitochondrion, nucleus | 33.64 | 28.46 |
| TraesCS1A01G351000.1 | Wheat | nucleus | 33.64 | 27.21 |
| TraesCS1B01G365200.1 | Wheat | nucleus | 32.73 | 25.9 |
| KXG33366 | Sorghum | cytosol | 32.73 | 24.49 |
| Os05t0531100-01 | Rice | nucleus | 30.91 | 23.94 |
| TraesCS1B01G351400.1 | Wheat | cytosol | 29.09 | 23.53 |
| TraesCS1A01G339100.1 | Wheat | cytosol | 31.82 | 23.49 |
| Zm00001d038814_P001 | Maize | cytosol, nucleus, plastid | 31.82 | 23.33 |
| Zm00001d043455_P001 | Maize | cytosol | 31.82 | 23.33 |
| Bra032329.1-P | Field mustard | nucleus | 43.64 | 23.3 |
| Zm00001d010814_P001 | Maize | cytosol | 29.09 | 23.19 |
| HORVU1Hr1G076310.1 | Barley | nucleus | 31.82 | 23.03 |
| Os01t0748300-00 | Rice | cytosol | 31.82 | 22.58 |
| EES18553 | Sorghum | cytosol | 29.09 | 19.63 |
| KXG22361 | Sorghum | nucleus | 28.18 | 18.9 |
| Bra021903.1-P | Field mustard | nucleus | 29.09 | 14.75 |
Protein Annotations
| EnsemblPlants:Bra020981.1 | EnsemblPlants:Bra020981.1-P | EnsemblPlantsGene:Bra020981 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF7 |
| PFAM:PF04520 | SEG:seg | UniParc:UPI000254566A | UniProt:M4DWT5 | MapMan:35.2 | : |
Description
AT4G18980 (E=3e-023) | unknown protein
Coordinates
chrA08:+:10790825..10791157
Molecular Weight (calculated)
12666.9 Da
IEP (calculated)
5.806
GRAVY (calculated)
-0.875
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEELQESD VIFSDDYFIN SNKNSNKENN KGKKPATVKK SSPVTIPSRT TFRWPEVEEE EDESEMTPPH VIIGKRRVES QMAFSFSTLK GRDLSRHRIS
101: VLRMTGFLEA
101: VLRMTGFLEA
001: MSEEFQESEV IFSDESFTRK DNKISHNNEN YERKSTEKDK ISSPVRIPSR TTIRYTEEEG EMTPPHVIIE KRRTEAQMAF SFCTLKGRDL SRHRNTVLRM
101: TGFLEV
101: TGFLEV
Arabidopsis Description
AtS40-3AtS40-3 [Source:UniProtKB/TrEMBL;Acc:A0A178UY13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.