Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0656300-01 | |
| Os02t0687500-01 | |
| Os06t0679100-00 | |
| Os10t0565500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29640.1 | Os02t0656300-01 | AT3G48150.1 | 21798944 |
| AT1G29640.1 | Os06t0679100-00 | AT3G48150.1 | 21798944 |
| AT1G29640.1 | Os02t0687500-01 | AT4G17680.1 | 21798944 |
| AT1G29640.1 | Os10t0565500-01 | AT4G17680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G283600.1 | Wheat | cytosol, plastid | 65.14 | 73.2 |
| Zm00001d043586_P001 | Maize | cytosol, plastid | 55.96 | 64.89 |
| Zm00001d011752_P001 | Maize | cytosol | 52.29 | 63.33 |
| KRH13257 | Soybean | mitochondrion | 22.02 | 48.98 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 34.86 | 38.0 |
| Bra005436.1-P | Field mustard | cytosol | 40.37 | 34.65 |
| CDY17236 | Canola | cytosol | 40.37 | 34.65 |
| AT4G18980.1 | Thale cress | cytosol | 33.03 | 33.96 |
| Bra012560.1-P | Field mustard | cytosol | 33.95 | 33.95 |
| CDX98601 | Canola | cytosol | 33.95 | 33.95 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 36.7 | 33.9 |
| CDX84328 | Canola | cytosol | 39.45 | 33.86 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 36.7 | 33.33 |
| AT2G34340.1 | Thale cress | nucleus | 41.28 | 33.09 |
| CDY01576 | Canola | nucleus | 33.03 | 32.73 |
| Bra017599.1-P | Field mustard | cytosol | 33.95 | 32.46 |
| CDY72609 | Canola | cytosol | 33.95 | 32.46 |
| CDX76503 | Canola | nucleus | 32.11 | 31.82 |
| Bra020981.1-P | Field mustard | nucleus | 32.11 | 31.82 |
| CDY09268 | Canola | nucleus | 32.11 | 31.82 |
| KRH21137 | Soybean | cytosol | 33.95 | 31.36 |
| AT5G45630.1 | Thale cress | nucleus | 32.11 | 30.7 |
| CDX78911 | Canola | nucleus | 29.36 | 30.48 |
| Bra013366.1-P | Field mustard | nucleus | 32.11 | 30.43 |
| KRH71505 | Soybean | cytosol | 27.52 | 30.3 |
| CDY72186 | Canola | cytosol | 39.45 | 30.28 |
| Os05t0518800-00 | Rice | cytosol, mitochondrion, nucleus | 35.78 | 30.0 |
| CDX99403 | Canola | nucleus | 30.28 | 29.73 |
| CDX99846 | Canola | cytosol | 37.61 | 29.71 |
| CDY26321 | Canola | nucleus | 37.61 | 29.71 |
| CDY43682 | Canola | cytosol | 38.53 | 29.58 |
| CDX94683 | Canola | cytosol | 36.7 | 29.41 |
| CDX94684 | Canola | cytosol | 36.7 | 29.41 |
| Bra030154.1-P | Field mustard | nucleus | 35.78 | 28.68 |
| CDY68974 | Canola | nucleus | 35.78 | 28.68 |
| CDX90198 | Canola | cytosol | 36.7 | 28.57 |
| CDY35299 | Canola | nucleus | 35.78 | 28.47 |
| PGSC0003DMT400035020 | Potato | nucleus | 35.78 | 27.86 |
| Solyc03g005890.1.1 | Tomato | nucleus | 34.86 | 27.54 |
| PGSC0003DMT400035019 | Potato | nucleus | 34.86 | 27.14 |
| Os01t0748300-00 | Rice | cytosol | 37.61 | 26.45 |
| AT1G29640.1 | Thale cress | cytosol | 33.95 | 26.43 |
| Bra010823.1-P | Field mustard | nucleus | 33.03 | 26.28 |
| Os05t0531100-01 | Rice | nucleus | 33.95 | 26.06 |
| KRH11111 | Soybean | nucleus | 34.86 | 21.97 |
| Bra032329.1-P | Field mustard | nucleus | 34.86 | 18.45 |
| Bra021903.1-P | Field mustard | nucleus | 24.77 | 12.44 |
Protein Annotations
| EnsemblPlants:Os01t0727700-00 | EnsemblPlantsGene:Os01g0727700 | EntrezGene:9272673 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF20 |
| PFAM:PF04520 | ProteinID:BAD86925.1 | ProteinID:BAD87463.1 | ProteinID:BAS74138.1 | RefSeq:XP_015634361.1 | SEG:seg |
| UniParc:UPI00004C27FE | UniProt:Q5JM44 | MapMan:35.2 | : | : | : |
Description
Hypothetical conserved gene. (Os01t0727700-00)
Coordinates
chr1:-:30341265..30341594
Molecular Weight (calculated)
11573.6 Da
IEP (calculated)
8.920
GRAVY (calculated)
-0.428
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASQRSVAV SAKCAAASWA EERRPFTDPI EIPAPSGAAT ARREDTEYGE GDYGGSGSGC GGEVVPPHVL LARRRAAFSM CSGQGRTLKG RDLRRVRDSV
101: LRMTGFIES
101: LRMTGFIES
001: MAEEFDESEV VFSDGLSSVL HKENENRLFG SDMERKKTRR IKRTTTEKAS LSSSLPVSIP ENIFRRYVGK EEDEYSEEEY SEGGGEMIPP HIMIGRRIQG
101: GQMAFSVCSG SGRTLKGRDL SRVRNSVLRL TGFLEA
101: GQMAFSVCSG SGRTLKGRDL SRVRNSVLRL TGFLEA
Arabidopsis Description
At2g34340 [Source:UniProtKB/TrEMBL;Acc:O80783]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.