CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	EER91265	AT4G26630.1	25387881
AT1G62670.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82832	Sorghum	cytosol	25.34	85.31
OQU82836	Sorghum	cytosol	48.08	75.65
OQU82831	Sorghum	cytosol	47.35	74.39
OQU82827	Sorghum	cytosol	60.96	73.65
OQU82823	Sorghum	cytosol	60.75	73.4
EES07882	Sorghum	cytosol	57.94	71.81
KXG19780	Sorghum	cytosol	42.99	70.05
KXG27690	Sorghum	cytosol, plastid	52.96	69.77
OQU82833	Sorghum	cytosol	32.4	69.64
OQU80148	Sorghum	mitochondrion	50.88	67.4
EES09203	Sorghum	cytosol	51.71	62.41
OQU82856	Sorghum	cytosol	41.95	53.72
Os10t0495200-01	Rice	mitochondrion	41.74	51.41
Os10t0497300-01	Rice	mitochondrion	41.74	50.63
Os10t0497432-01	Rice	mitochondrion	13.6	49.25
Os10t0501700-00	Rice	cytosol	22.64	48.02
OQU88594	Sorghum	cytosol	25.65	47.32
Os08t0110200-01	Rice	mitochondrion	38.63	46.62
Os10t0497366-00	Rice	mitochondrion	19.11	45.89
Os08t0248400-01	Rice	mitochondrion	20.56	45.0
Os10t0495100-01	Rice	cytosol, mitochondrion	21.39	44.69
Os08t0107800-01	Rice	mitochondrion	27.83	42.95
Os10t0499500-01	Rice	mitochondrion	22.53	42.89
EER95949	Sorghum	mitochondrion	29.28	42.53
Os08t0107700-01	Rice	cytosol, mitochondrion	16.41	42.25
KXG35774	Sorghum	cytosol, mitochondrion	20.66	42.07
KXG28799	Sorghum	plastid	32.61	41.32
KXG34536	Sorghum	mitochondrion	23.57	39.69
KRH39004	Soybean	cytosol	15.89	30.78
KRH39057	Soybean	cytosol	15.78	30.58
KRH39054	Soybean	cytosol	15.68	30.38
KRH39072	Soybean	cytosol	15.47	30.04
KRH39074	Soybean	cytosol	15.47	29.98
KRH40513	Soybean	plastid	10.9	29.91
AT1G63330.2	Thale cress	cytosol	17.34	29.87
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	15.26	29.11
KRH08636	Soybean	cytosol	15.68	28.93
KRH39112	Soybean	cytosol	14.85	28.77
VIT_12s0028g02320.t01	Wine grape	mitochondrion	14.23	28.72
KRH09084	Soybean	plastid	15.06	28.38
VIT_14s0081g00270.t01	Wine grape	plastid	17.03	28.28
KRH08628	Soybean	plastid	16.2	28.26
VIT_14s0081g00120.t01	Wine grape	plastid	17.03	28.13
KRH08671	Soybean	cytosol, mitochondrion	16.1	28.03
AT1G62930.1	Thale cress	plastid	18.28	27.98
KRH08277	Soybean	plastid	16.41	27.87
AT1G62590.1	Thale cress	mitochondrion	18.28	27.76
AT1G63070.1	Thale cress	mitochondrion	16.93	27.63
KRH08639	Soybean	mitochondrion, plastid	16.2	27.61
AT1G63080.3	Thale cress	mitochondrion	17.55	27.52
KRH48615	Soybean	mitochondrion	15.58	27.52
AT1G63400.1	Thale cress	cytosol, plastid	16.41	27.38
Bra026882.1-P	Field mustard	cytosol	15.16	27.34
AT1G63130.1	Thale cress	mitochondrion	17.86	27.3
KRH08607	Soybean	cytosol	15.89	27.27
KRH39050	Soybean	mitochondrion	15.06	27.26
KRH39066	Soybean	cytosol	15.68	27.21
PGSC0003DMT400008757	Potato	cytosol	14.02	27.11
VIT_14s0081g00110.t01	Wine grape	cytosol	13.81	27.09
KRH08625	Soybean	plastid	16.1	26.91
AT1G63150.1	Thale cress	mitochondrion	17.55	26.87
KRH40400	Soybean	plastid	16.1	26.86
Bra036649.1-P	Field mustard	cytosol	10.9	26.85
Bra016762.1-P	Field mustard	mitochondrion	16.93	26.85
KRH41817	Soybean	mitochondrion	15.47	26.85
AT1G62670.1	Thale cress	mitochondrion	17.55	26.83
Bra026971.1-P	Field mustard	mitochondrion	17.45	26.71
AT1G12300.1	Thale cress	mitochondrion	17.65	26.69
AT5G16640.1	Thale cress	mitochondrion	13.91	26.59
AT1G62910.1	Thale cress	mitochondrion	17.45	26.58
AT1G12620.1	Thale cress	cytosol, mitochondrion	17.13	26.57
AT1G62914.1	Thale cress	mitochondrion	14.54	26.52
KRH25652	Soybean	cytosol, golgi	14.85	26.48
KRH31646	Soybean	cytosol	14.23	26.45
Bra027636.1-P	Field mustard	cytosol	8.83	26.23
KRH09121	Soybean	mitochondrion	14.54	26.22
Bra028267.1-P	Field mustard	mitochondrion	17.03	26.2
Bra021192.1-P	Field mustard	plastid	13.71	26.19
AT3G22470.1	Thale cress	cytosol, mitochondrion	16.82	26.17
KRH09154	Soybean	mitochondrion	15.06	26.08
Solyc06g005220.2.1	Tomato	cytosol	10.9	25.86
Bra036651.1-P	Field mustard	mitochondrion	14.33	25.79
AT1G12775.1	Thale cress	cytosol, mitochondrion	17.24	25.78
Bra026958.1-P	Field mustard	mitochondrion	17.03	25.75
VIT_14s0081g00280.t01	Wine grape	mitochondrion	17.03	25.67
AT3G16710.1	Thale cress	mitochondrion	13.5	25.64
Bra031731.1-P	Field mustard	mitochondrion	13.5	25.59
Bra026954.1-P	Field mustard	mitochondrion	17.24	25.54
Bra026884.1-P	Field mustard	cytosol	12.15	25.49
PGSC0003DMT400052977	Potato	cytosol	10.28	25.45
Bra027658.1-P	Field mustard	cytosol, mitochondrion	14.33	25.41
Solyc06g007280.2.1	Tomato	cytosol	6.65	25.1
Bra006187.1-P	Field mustard	plastid	7.58	25.09
PGSC0003DMT400025074	Potato	cytosol	14.33	25.0
VIT_14s0030g02280.t01	Wine grape	plastid	14.54	24.96
KRH17148	Soybean	mitochondrion	14.12	24.95
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	13.6	24.95
Solyc06g007740.1.1	Tomato	cytosol	15.16	24.75
Bra025516.1-P	Field mustard	cytosol, mitochondrion	12.25	24.74
Solyc06g007300.1.1	Tomato	extracellular	15.16	24.66
PGSC0003DMT400015293	Potato	mitochondrion	15.58	24.59
PGSC0003DMT400015298	Potato	mitochondrion	15.58	24.59
AT1G62720.1	Thale cress	mitochondrion	12.36	24.54
KRH09097	Soybean	plastid	14.85	24.53
PGSC0003DMT400056665	Potato	mitochondrion	14.95	24.45
KRH09095	Soybean	plastid	14.85	24.44
CDX68679	Canola	cytosol	2.91	24.35
AT1G64580.1	Thale cress	mitochondrion	13.19	24.28
AT1G62680.2	Thale cress	plastid	13.81	24.27
Solyc04g080120.1.1	Tomato	extracellular	15.37	24.18
PGSC0003DMT400056663	Potato	plastid	14.75	24.15
AT1G12700.2	Thale cress	cytosol	15.47	24.11
Bra027026.1-P	Field mustard	mitochondrion	12.98	23.9
AT1G64583.1	Thale cress	mitochondrion	12.67	23.83
KRH09082	Soybean	cytosol	10.07	23.77
OQU88581	Sorghum	cytosol	26.79	23.74
PGSC0003DMT400025087	Potato	endoplasmic reticulum	12.15	23.64
Bra026836.1-P	Field mustard	cytosol, mitochondrion	12.05	23.63
KRH08599	Soybean	cytosol, plastid	16.41	23.62
Solyc06g007810.1.1	Tomato	cytosol	6.54	23.51
PGSC0003DMT400008760	Potato	mitochondrion	14.23	23.38
PGSC0003DMT400025067	Potato	cytosol	11.53	23.32
PGSC0003DMT400052971	Potato	mitochondrion	14.33	23.27
Bra026957.1-P	Field mustard	mitochondrion	14.54	23.22
PGSC0003DMT400008759	Potato	cytosol	7.68	23.2
PGSC0003DMT400053185	Potato	mitochondrion	14.12	23.05
AT1G06580.1	Thale cress	mitochondrion	11.84	22.8
Bra026401.1-P	Field mustard	plastid	12.56	22.62
Bra027029.1-P	Field mustard	mitochondrion	5.61	22.22
AT4G26800.2	Thale cress	mitochondrion, plastid	11.84	22.18
PGSC0003DMT400053182	Potato	cytosol	13.71	22.04
AT5G41170.1	Thale cress	mitochondrion	11.84	21.63
Bra027726.1-P	Field mustard	mitochondrion	10.49	21.44
AT1G64100.2	Thale cress	cytosol	17.76	21.22
KRH09085	Soybean	mitochondrion	15.06	20.6
PGSC0003DMT400053556	Potato	mitochondrion	9.76	20.48
Bra027656.1-P	Field mustard	cytosol	19.21	19.66
VIT_14s0030g02260.t01	Wine grape	cytosol	8.72	18.96
KRH39064	Soybean	cytosol	17.13	17.03
KRH12873	Soybean	cytosol	12.15	16.81
Bra016758.1-P	Field mustard	plastid	16.82	13.98

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1Z5RGH0	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:OQU82834	ProteinID:OQU82834	ProteinID:OQU82834.1	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3005G027840	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B8B9BB5
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:2460971..2464621

Molecular Weight (calculated)

107590.0 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.020

Length

963 amino acids

Sequence
(BLAST)

001: MSRRVSAVRD RCLELERVIA DRARSGSLGL GDALKLFDEL LPHARPASVV AFNHLLAAVS RSSGRRSTTS ESETVVSLFN RMVRDCYIKV APNRCTYSIL
101: IGCFCRMGHL EHGFAAFGLI LKTGWRMDHI VINQLLNGLC DGKRVGEAMD VLLQRMPELG CMPDTVSYNI LLKGLCNEKR AEEALELLHM MADDQVWSCP
201: PNVVSYSTVI NGFFTEGQVD KPYNLFLEMM DRGIPPDVVT YTTVIDGLCK AQLFDRAEAV FQQMIDNGVK PNIDTYNCLI HGYLSIGKWK EVVRMLEEMS
301: AGGPKPNCCT YGSLLNYLCK NGRCREARFF FDSMIGKGIK PSVTTYGIML HGYATKVSYG ALIDALCKLG RVDDAEVKFN QMINEGVTPD IVVFSSLVYG
401: LCTVDKWEKV EELFFEMLNV GIHPNIVFFN TILCNLCKEG RVMEGQRLVD SIECMGVRPD VISYNTLIDG HCLAGTIDEA SKLLEGMVSV GLKPDSFSYN
501: TLLHGYCKAG RIDSAYSHFR KMLSNGITPG VVTYNTILHG LFQTKRFSEA KELYLNMINS GTKWDIYTYN IILNGLCKSN CVDEAIKMFQ NLCSKGLQLN
601: IITFNIMIGA LLKGGRKEDA MDLFAAIPAN GLVQNVVTYR LVVENLIEEG SLEEFDSLFS AMEKNGTAPN SQMLNALVRR LLHRGDISRA GAYLSKLDER
701: NFSVEASTTS MLISIFSSDE YQHHAKSLPK KARRIDDAYS LFREMLMKGL TPDVVTYNTI LHGLFQTGRF SEAKELYLSM INSRTQMNIY TYNIILNGLC
801: KSNCVDEAFK MFQSLCSKGL QLNIITFNIM IGALLKGGRK EDAMDLFAAI PANGLVPDVV TYRLVAENLI EEGSLEEFDG LFLTMEKSGT PLDSRLLNAL
901: VRRLLQRGDI SRAGAYLSKL DEKNFSLEAS TTSELISLFS RGEYQHHAKS LPEKYRLLNE ANS

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.