CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	EER91265	AT4G26630.1	25387881
AT1G62670.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82827	Sorghum	cytosol	80.18	78.17
OQU82823	Sorghum	cytosol	79.92	77.92
KXG19780	Sorghum	cytosol	59.2	77.83
OQU82836	Sorghum	cytosol	59.46	75.49
KXG27690	Sorghum	cytosol, plastid	69.63	74.01
OQU82831	Sorghum	cytosol	57.92	73.41
OQU82833	Sorghum	cytosol	41.83	72.54
OQU80148	Sorghum	mitochondrion	66.8	71.39
OQU82832	Sorghum	cytosol	26.25	71.33
EES09203	Sorghum	cytosol	66.67	64.91
OQU82834	Sorghum	cytosol	71.81	57.94
OQU82856	Sorghum	cytosol	55.47	57.31
Os10t0495200-01	Rice	mitochondrion	54.44	54.09
Os10t0497366-00	Rice	mitochondrion	27.28	52.87
Os10t0497300-01	Rice	mitochondrion	53.8	52.64
Os10t0501700-00	Rice	cytosol	30.63	52.42
Os10t0495100-01	Rice	cytosol, mitochondrion	30.37	51.19
Os08t0110200-01	Rice	mitochondrion	49.81	48.5
Os10t0497432-01	Rice	mitochondrion	16.6	48.5
Os08t0248400-01	Rice	mitochondrion	27.03	47.73
OQU88594	Sorghum	cytosol	31.66	47.13
Os10t0499500-01	Rice	mitochondrion	30.12	46.25
Os08t0107800-01	Rice	mitochondrion	36.55	45.51
EER95949	Sorghum	mitochondrion	38.1	44.65
KXG28799	Sorghum	plastid	42.86	43.82
KXG35774	Sorghum	cytosol, mitochondrion	26.64	43.76
KXG34536	Sorghum	mitochondrion	31.27	42.48
Os08t0107700-01	Rice	cytosol, mitochondrion	20.08	41.71
KRH39054	Soybean	cytosol	21.24	33.2
KRH39074	Soybean	cytosol	20.98	32.8
KRH39072	Soybean	cytosol	20.85	32.66
KRH39004	Soybean	cytosol	20.72	32.39
KRH39057	Soybean	cytosol	20.72	32.39
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.72	31.88
Solyc06g007280.2.1	Tomato	cytosol	10.3	31.37
KRH40513	Soybean	plastid	14.16	31.34
PGSC0003DMT400008759	Potato	cytosol	12.74	31.03
KRH39112	Soybean	cytosol	19.82	30.99
AT1G63330.2	Thale cress	cytosol	22.27	30.95
Solyc06g005220.2.1	Tomato	cytosol	15.96	30.54
KRH08277	Soybean	plastid	22.14	30.34
KRH48615	Soybean	mitochondrion	21.24	30.28
KRH08636	Soybean	cytosol	20.33	30.27
KRH08639	Soybean	mitochondrion, plastid	21.88	30.09
PGSC0003DMT400052977	Potato	cytosol	15.06	30.08
AT1G62930.1	Thale cress	plastid	24.32	30.05
VIT_14s0081g00120.t01	Wine grape	plastid	22.52	30.02
Bra027636.1-P	Field mustard	cytosol	12.48	29.94
Bra006187.1-P	Field mustard	plastid	11.2	29.9
AT1G63400.1	Thale cress	cytosol, plastid	22.14	29.81
KRH08607	Soybean	cytosol	21.49	29.77
VIT_14s0081g00110.t01	Wine grape	cytosol	18.79	29.74
AT1G62914.1	Thale cress	mitochondrion	20.21	29.73
KRH39066	Soybean	cytosol	21.24	29.73
AT1G62670.1	Thale cress	mitochondrion	24.07	29.68
KRH08628	Soybean	plastid	20.98	29.53
AT1G62910.1	Thale cress	mitochondrion	23.94	29.43
Bra026882.1-P	Field mustard	cytosol	20.21	29.4
AT1G63130.1	Thale cress	mitochondrion	23.81	29.37
AT1G63070.1	Thale cress	mitochondrion	22.27	29.32
KRH08671	Soybean	cytosol, mitochondrion	20.85	29.29
KRH41817	Soybean	mitochondrion	20.85	29.19
AT1G63080.3	Thale cress	mitochondrion	23.04	29.15
KRH31646	Soybean	cytosol	19.43	29.15
VIT_12s0028g02320.t01	Wine grape	mitochondrion	17.89	29.14
PGSC0003DMT400008757	Potato	cytosol	18.66	29.12
Solyc06g007810.1.1	Tomato	cytosol	10.04	29.1
KRH39050	Soybean	mitochondrion	19.82	28.95
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.43	28.76
VIT_14s0081g00270.t01	Wine grape	plastid	21.36	28.62
AT1G63150.1	Thale cress	mitochondrion	23.17	28.62
KRH40400	Soybean	plastid	21.24	28.6
KRH08625	Soybean	plastid	21.11	28.47
AT1G62590.1	Thale cress	mitochondrion	23.17	28.39
KRH09084	Soybean	plastid	18.66	28.38
KRH17148	Soybean	mitochondrion	19.82	28.26
AT3G16710.1	Thale cress	mitochondrion	18.4	28.21
AT1G12300.1	Thale cress	mitochondrion	23.04	28.1
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.39	28.02
Bra021192.1-P	Field mustard	plastid	18.15	27.98
KRH25652	Soybean	cytosol, golgi	19.43	27.96
PGSC0003DMT400025074	Potato	cytosol	19.82	27.9
Bra036649.1-P	Field mustard	cytosol	14.03	27.88
Bra016762.1-P	Field mustard	mitochondrion	21.62	27.68
Bra026884.1-P	Field mustard	cytosol	16.34	27.67
AT3G22470.1	Thale cress	cytosol, mitochondrion	22.01	27.63
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.3	27.62
Solyc06g007300.1.1	Tomato	extracellular	20.85	27.36
Bra026836.1-P	Field mustard	cytosol, mitochondrion	17.25	27.29
Solyc06g007740.1.1	Tomato	cytosol	20.59	27.12
Bra036651.1-P	Field mustard	mitochondrion	18.66	27.1
AT5G16640.1	Thale cress	mitochondrion	17.5	26.98
Bra026954.1-P	Field mustard	mitochondrion	22.52	26.92
Bra026971.1-P	Field mustard	mitochondrion	21.75	26.87
Bra028267.1-P	Field mustard	mitochondrion	21.62	26.84
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.47	26.83
PGSC0003DMT400015293	Potato	mitochondrion	20.98	26.72
PGSC0003DMT400015298	Potato	mitochondrion	20.98	26.72
AT1G12775.1	Thale cress	cytosol, mitochondrion	22.14	26.71
Bra026958.1-P	Field mustard	mitochondrion	21.88	26.69
KRH09154	Soybean	mitochondrion	19.05	26.62
PGSC0003DMT400056665	Potato	mitochondrion	20.08	26.49
PGSC0003DMT400052971	Potato	mitochondrion	20.21	26.48
PGSC0003DMT400008760	Potato	mitochondrion	19.95	26.45
AT1G62720.1	Thale cress	mitochondrion	16.47	26.39
AT1G64583.1	Thale cress	mitochondrion	17.37	26.37
PGSC0003DMT400056663	Potato	plastid	19.95	26.36
Bra027029.1-P	Field mustard	mitochondrion	8.24	26.34
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.62	26.29
AT1G64580.1	Thale cress	mitochondrion	17.63	26.2
Solyc04g080120.1.1	Tomato	extracellular	20.59	26.14
KRH09121	Soybean	mitochondrion	17.76	25.84
AT1G62680.2	Thale cress	plastid	18.15	25.73
VIT_14s0030g02280.t01	Wine grape	plastid	18.53	25.67
PGSC0003DMT400053185	Potato	mitochondrion	19.43	25.59
PGSC0003DMT400025067	Potato	cytosol	15.57	25.42
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.09	25.25
CDX68679	Canola	cytosol	3.73	25.22
KRH09095	Soybean	plastid	18.92	25.13
AT1G12700.2	Thale cress	cytosol	19.95	25.08
Bra027026.1-P	Field mustard	mitochondrion	16.86	25.05
AT5G41170.1	Thale cress	mitochondrion	16.86	24.86
KRH09097	Soybean	plastid	18.53	24.7
KRH08599	Soybean	cytosol, plastid	21.24	24.66
KRH09082	Soybean	cytosol	12.87	24.51
Bra031731.1-P	Field mustard	mitochondrion	15.96	24.41
Bra026957.1-P	Field mustard	mitochondrion	18.79	24.21
Bra027726.1-P	Field mustard	mitochondrion	14.67	24.2
AT1G06580.1	Thale cress	mitochondrion	15.57	24.2
PGSC0003DMT400053182	Potato	cytosol	18.53	24.04
PGSC0003DMT400053556	Potato	mitochondrion	13.64	23.09
OQU88581	Sorghum	cytosol	32.05	22.91
Bra026401.1-P	Field mustard	plastid	15.57	22.62
AT4G26800.2	Thale cress	mitochondrion, plastid	14.93	22.57
VIT_14s0030g02260.t01	Wine grape	cytosol	12.74	22.35
AT1G64100.2	Thale cress	cytosol	22.39	21.59
KRH09085	Soybean	mitochondrion	18.92	20.88
Bra027656.1-P	Field mustard	cytosol	24.45	20.19
KRH39064	Soybean	cytosol	22.78	18.27
KRH12873	Soybean	cytosol	16.34	18.25
Bra016758.1-P	Field mustard	plastid	21.11	14.15

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:C5Y357	EnsemblPlants:EES07882	ProteinID:EES07882	ProteinID:EES07882.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3005G011000	SUPFAM:SSF48452
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00081AE8B0	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:982653..985317

Molecular Weight (calculated)

86795.9 Da

IEP (calculated)

7.082

GRAVY (calculated)

0.045

Length

777 amino acids

Sequence
(BLAST)

001: MSRRVSTAVS DRCLELERII GARARAGSLS VDDALKLFDE FLHHARPASI IAFNQLLAAV SSASRRGSSS TSELVVSCFN RMIRDCCSKV APDVFTYSIL
101: VGCFCRMGRL EHGFAAFGLI LKTGWRVNDV VVVNRLLKGL CDAKRVGEAM GVLLRRMSEL GCTPNVVSYN TLLKGFCDEN RAEEALELLH MMADGQVRSC
201: PPNLVSYNTV INGFFTEGQV DKAYNLFLDM TDQGIPPNVV TYTIVIDGLC KAQVVDRAEG VFQQMIDKGQ WKEVVRMLKE MSAHGLEPDC FTYGLLLDYL
301: CKKGKCTEAR KLFDSMIRKG IKPDVSIYGI ILHGYATKGA LSEMHSFLDL MVGNGISPNH YIFNIVFCAF AKKAMIGEAM DIFNKMRQQG LSPNVVNYAT
401: LIDALCKLGR VDDAELKFNQ MINEGVAPNI VVFTSLVYGL CTIDKWEKAG ELFFEMVNQG IHPNVVFFNT IMCNLCTEGR VMKAQRLIDL MERVGTRPDI
501: ISYNALIRGH CLVGKTDEAS KLLDIMLSVG LKPNECTYNT LLHGYCRDGR IDDAYSVFQE MLSNGITPVV VTYNTILHGL FKTRRFSEAK ELYLNMITSG
601: KQWSIYTYNI ILNGLSKNNC VDEALKMFQS LCSKDLQVDI ITFNIMIGAL LKDGRKEDAM NLFATISANG LVPDVTTYRL IAENLIEEGS LEEFDGMFSE
701: MEKSGCAPNS LMLNFLVRRL LLRGDISRAG AYLSKIDEKN FSLEASTTSM LISLFSREEH QAKSLPEKYH FLNEAKK

Best Arabidopsis Sequence Match ( AT1G12620.1 )
(BLAST)

001: MRGLIQTRLL ETGTLRTALF LSCYGRVFSS VSDGKGKVSY RERLRSGIVD IKEDDAVDLF QEMTRSRPRP RLIDFSRLFS VVARTKQYDL VLDLCKQMEL
101: KGIAHNLYTL SIMINCCCRC RKLSLAFSAM GKIIKLGYEP DTVTFSTLIN GLCLEGRVSE ALELVDRMVE MGHKPTLITL NALVNGLCLN GKVSDAVLLI
201: DRMVETGFQP NEVTYGPVLK VMCKSGQTAL AMELLRKMEE RKIKLDAVKY SIIIDGLCKD GSLDNAFNLF NEMEIKGFKA DIIIYTTLIR GFCYAGRWDD
301: GAKLLRDMIK RKITPDVVAF SALIDCFVKE GKLREAEELH KEMIQRGISP DTVTYTSLID GFCKENQLDK ANHMLDLMVS KGCGPNIRTF NILINGYCKA
401: NLIDDGLELF RKMSLRGVVA DTVTYNTLIQ GFCELGKLEV AKELFQEMVS RRVRPDIVSY KILLDGLCDN GEPEKALEIF EKIEKSKMEL DIGIYNIIIH
501: GMCNASKVDD AWDLFCSLPL KGVKPDVKTY NIMIGGLCKK GSLSEADLLF RKMEEDGHSP NGCTYNILIR AHLGEGDATK SAKLIEEIKR CGFSVDASTV
601: KMVVDMLSDG RLKKSFLDML S

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12620 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.