Factsheet for Bra027029.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
plasma membrane 1
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46909	Canola	mitochondrion	96.3	80.14
Bra027026.1-P	Field mustard	mitochondrion	89.71	41.68
Bra006187.1-P	Field mustard	plastid	47.33	39.52
Bra027636.1-P	Field mustard	cytosol	50.21	37.65
Bra036651.1-P	Field mustard	mitochondrion	80.25	36.45
Bra036649.1-P	Field mustard	cytosol	55.56	34.53
AT1G62680.2	Thale cress	plastid	75.72	33.58
Bra025516.1-P	Field mustard	cytosol, mitochondrion	58.44	29.77
Bra026884.1-P	Field mustard	cytosol	53.91	28.54
Bra021192.1-P	Field mustard	plastid	55.97	26.98
Solyc06g007280.2.1	Tomato	cytosol	27.16	25.88
Bra027726.1-P	Field mustard	mitochondrion	48.56	25.05
Bra026882.1-P	Field mustard	cytosol	51.03	23.22
Bra026836.1-P	Field mustard	cytosol, mitochondrion	46.5	23.01
PGSC0003DMT400052977	Potato	cytosol	36.21	22.62
PGSC0003DMT400008759	Potato	cytosol	29.63	22.57
Bra027658.1-P	Field mustard	cytosol, mitochondrion	49.79	22.28
Solyc06g005220.2.1	Tomato	cytosol	37.04	22.17
HORVU1Hr1G011250.1	Barley	cytosol	26.75	22.03
Bra026401.1-P	Field mustard	plastid	48.15	21.87
Solyc06g007810.1.1	Tomato	cytosol	23.87	21.64
Bra016762.1-P	Field mustard	mitochondrion	53.5	21.42
Bra026971.1-P	Field mustard	mitochondrion	53.91	20.83
Bra028267.1-P	Field mustard	mitochondrion	52.67	20.45
Bra026958.1-P	Field mustard	mitochondrion	53.09	20.25
Bra026957.1-P	Field mustard	mitochondrion	49.38	19.9
VIT_12s0028g02320.t01	Wine grape	mitochondrion	38.68	19.71
Bra031731.1-P	Field mustard	mitochondrion	41.15	19.68
VIT_14s0030g02260.t01	Wine grape	cytosol	34.98	19.19
Bra026954.1-P	Field mustard	mitochondrion	51.03	19.08
VIT_14s0081g00110.t01	Wine grape	cytosol	37.86	18.74
PGSC0003DMT400053556	Potato	mitochondrion	35.39	18.74
PGSC0003DMT400025087	Potato	endoplasmic reticulum	37.45	18.38
PGSC0003DMT400025067	Potato	cytosol	35.8	18.28
HORVU1Hr1G010990.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	21.81	17.85
TraesCS6B01G127200.1	Wheat	cytosol	24.69	17.44
VIT_14s0030g02280.t01	Wine grape	plastid	39.92	17.29
KRH09256	Soybean	mitochondrion	39.09	16.99
Os10t0497366-00	Rice	mitochondrion	27.98	16.96
PGSC0003DMT400025074	Potato	cytosol	38.27	16.85
TraesCS2B01G126900.1	Wheat	cytosol	26.34	16.75
KRH70370	Soybean	cytosol	37.04	16.54
Os10t0501700-00	Rice	cytosol	30.45	16.3
VIT_14s0081g00120.t01	Wine grape	plastid	39.09	16.3
VIT_14s0081g00270.t01	Wine grape	plastid	38.27	16.03
HORVU1Hr1G018190.2	Barley	cytosol	18.52	15.79
KRH38755	Soybean	mitochondrion	38.27	15.66
KRH49698	Soybean	cytosol	36.63	15.61
KRH42744	Soybean	mitochondrion	39.09	15.55
PGSC0003DMT400008757	Potato	cytosol	31.69	15.46
Solyc06g007740.1.1	Tomato	cytosol	37.45	15.42
KRH75045	Soybean	mitochondrion	37.86	15.41
Solyc06g007300.1.1	Tomato	extracellular	37.45	15.37
KRH58843	Soybean	nucleus	38.27	15.22
VIT_14s0081g00280.t01	Wine grape	mitochondrion	39.92	15.18
PGSC0003DMT400052971	Potato	mitochondrion	37.04	15.18
PGSC0003DMT400015293	Potato	mitochondrion	37.86	15.08
PGSC0003DMT400015298	Potato	mitochondrion	37.86	15.08
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	23.46	15.08
KRH75048	Soybean	mitochondrion	37.45	14.97
PGSC0003DMT400056663	Potato	plastid	35.8	14.8
PGSC0003DMT400056665	Potato	mitochondrion	35.8	14.77
Solyc04g080120.1.1	Tomato	extracellular	37.04	14.71
PGSC0003DMT400008760	Potato	mitochondrion	34.57	14.33
KRH75063	Soybean	mitochondrion, plastid	35.39	14.24
TraesCS6D01G083300.1	Wheat	mitochondrion	25.93	14.13
Os10t0495100-01	Rice	cytosol, mitochondrion	26.75	14.1
PGSC0003DMT400053185	Potato	mitochondrion	34.16	14.07
TraesCS6A01G083000.1	Wheat	cytosol	25.93	13.82
TraesCS6B01G114300.1	Wheat	cytosol	21.81	13.62
TraesCS1D01G058000.1	Wheat	cytosol	22.63	13.55
HORVU6Hr1G017870.2	Barley	mitochondrion	16.46	13.33
PGSC0003DMT400053182	Potato	cytosol	32.51	13.19
TraesCS1A01G067700.1	Wheat	extracellular	18.11	13.06
Os08t0248400-01	Rice	mitochondrion	23.46	12.95
KXG34536	Sorghum	mitochondrion	30.45	12.94
Zm00001d018982_P001	Maize	mitochondrion	18.52	12.86
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	26.75	12.72
TraesCSU01G089700.1	Wheat	mitochondrion	25.1	12.66
TraesCS6D01G017700.1	Wheat	plastid	27.57	12.55
TraesCS6A01G014600.1	Wheat	cytosol	20.16	12.41
TraesCS6D01G083400.1	Wheat	mitochondrion	25.1	12.37
TraesCS6D01G083100.1	Wheat	cytosol	24.28	12.04
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	23.87	11.98
TraesCS1B01G072700.1	Wheat	cytosol	25.1	11.96
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	24.69	11.93
TraesCS6D01G017800.1	Wheat	cytosol	26.34	11.92
TraesCS6B01G127500.1	Wheat	cytosol	23.87	11.84
TraesCS6A01G015000.1	Wheat	mitochondrion	20.16	11.81
Bra016758.1-P	Field mustard	plastid	55.97	11.73
HORVU0Hr1G035310.1	Barley	cytosol	27.57	11.51
OQU88594	Sorghum	cytosol	24.69	11.49
TraesCS1D01G058400.1	Wheat	cytosol	24.28	11.46
TraesCS2A01G531100.1	Wheat	cytosol	26.75	11.42
TraesCS7B01G469500.1	Wheat	cytosol	26.34	11.39
Bra027656.1-P	Field mustard	cytosol	44.03	11.37
OQU82831	Sorghum	cytosol	28.4	11.26
EER95949	Sorghum	mitochondrion	30.45	11.16
Os10t0499500-01	Rice	mitochondrion	23.05	11.07
TraesCS1B01G039700.1	Wheat	cytosol	27.57	11.02
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	21.81	11.02
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	22.63	10.89
TraesCSU01G090200.1	Wheat	cytosol	19.75	10.86
TraesCS1D01G055300.1	Wheat	cytosol	27.57	10.84
HORVU1Hr1G011020.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	28.4	10.8
Os08t0107800-01	Rice	mitochondrion	27.57	10.74
TraesCS2B01G560300.1	Wheat	cytosol	25.1	10.72
TraesCS2B01G559900.1	Wheat	cytosol	23.87	10.7
TraesCS1B01G038400.1	Wheat	cytosol	26.75	10.69
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	30.04	10.44
TraesCS1A01G031600.1	Wheat	cytosol	28.4	10.42
TraesCS1B01G084800.1	Wheat	cytosol	19.34	10.13
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	29.63	10.07
TraesCS1B01G072300.1	Wheat	plastid	23.46	10.04
TraesCS6D01G047700.1	Wheat	mitochondrion	28.4	9.99
TraesCS1B01G038200.1	Wheat	mitochondrion	25.93	9.95
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	29.22	9.94
KXG35774	Sorghum	cytosol, mitochondrion	19.34	9.94
TraesCS1D01G056700.1	Wheat	cytosol	24.69	9.88
TraesCS1B01G075300.1	Wheat	cytosol	24.28	9.88
Os10t0495200-01	Rice	mitochondrion	31.69	9.85
TraesCS2D01G532400.1	Wheat	cytosol	24.69	9.82
TraesCS1B01G072400.1	Wheat	cytosol	27.98	9.78
OQU82856	Sorghum	cytosol	30.04	9.71
Os10t0497300-01	Rice	mitochondrion	31.69	9.7
TraesCS7D01G231400.1	Wheat	cytosol, plastid	16.05	9.68
TraesCS1D01G069100.1	Wheat	mitochondrion	25.51	9.64
TraesCS6B01G021600.1	Wheat	mitochondrion	28.4	9.64
TraesCS2A01G531000.1	Wheat	golgi	26.75	9.57
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	17.28	9.57
KXG27690	Sorghum	cytosol, plastid	28.4	9.44
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	27.57	9.37
TraesCS1B01G085400.1	Wheat	cytosol	24.69	9.36
OQU80148	Sorghum	mitochondrion	27.98	9.35
TraesCS1D01G068700.1	Wheat	cytosol	16.87	9.34
TraesCS1A01G054800.1	Wheat	cytosol	22.22	9.28
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	30.04	9.28
TraesCS2A01G526200.1	Wheat	golgi	25.93	9.25
TraesCS1B01G073100.1	Wheat	cytosol	23.05	9.24
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	16.46	9.24
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	25.1	9.19
TraesCS1B01G086000.1	Wheat	plastid	25.93	9.18
HORVU6Hr1G014310.1	Barley	mitochondrion	25.93	9.17
HORVU1Hr1G004750.6	Barley	plastid	30.04	9.15
TraesCS2D01G532500.1	Wheat	plastid	25.51	9.12
TraesCS2D01G532100.1	Wheat	mitochondrion	25.93	9.1
TraesCS1A01G067000.1	Wheat	mitochondrion	26.75	9.08
EES09203	Sorghum	cytosol	29.63	9.02
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	24.28	8.95
OQU82833	Sorghum	cytosol	16.46	8.93
TraesCS2A01G530600.1	Wheat	cytosol	27.98	8.89
TraesCS6D01G076500.1	Wheat	plastid	16.46	8.83
TraesCS1A01G031700.1	Wheat	plastid	26.75	8.77
TraesCS1A01G054500.1	Wheat	mitochondrion	27.98	8.72
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	28.4	8.71
TraesCS1B01G092600.1	Wheat	plastid	18.52	8.7
OQU82823	Sorghum	cytosol	28.4	8.66
HORVU2Hr1G105460.11	Barley	mitochondrion, plastid	16.87	8.54
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	25.1	8.53
Zm00001d007534_P001	Maize	plastid	27.16	8.49
TraesCS1A01G067600.1	Wheat	mitochondrion	28.4	8.49
Zm00001d007548_P001	Maize	plastid	28.4	8.48
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	24.28	8.46
Zm00001d007559_P001	Maize	plastid	28.4	8.45
TraesCS1D01G033000.1	Wheat	cytosol	13.99	8.42
OQU82827	Sorghum	cytosol	27.57	8.41
TraesCS1A01G054700.2	Wheat	mitochondrion	27.98	8.37
TraesCS1B01G085300.1	Wheat	mitochondrion	27.16	8.33
TraesCS1D01G068800.1	Wheat	plastid	27.98	8.33
TraesCS6D01G290900.1	Wheat	mitochondrion	25.1	8.32
Zm00001d009733_P001	Maize	cytosol	27.16	8.3
TraesCS1B01G039100.1	Wheat	mitochondrion	26.75	8.3
TraesCS2B01G560700.1	Wheat	plastid	26.34	8.3
KXG19780	Sorghum	cytosol	20.16	8.29
TraesCS1D01G068500.1	Wheat	mitochondrion	27.57	8.25
EES07882	Sorghum	cytosol	26.34	8.24
HORVU1Hr1G010970.1	Barley	mitochondrion	27.57	8.11
Zm00001d007555_P001	Maize	plastid	27.16	8.11
TraesCS1B01G038500.1	Wheat	mitochondrion	26.34	8.1
TraesCS2D01G532300.1	Wheat	plastid	25.93	8.1
HORVU6Hr1G002890.6	Barley	cytosol, plastid	26.34	8.05
HORVU1Hr1G014040.1	Barley	mitochondrion	27.57	8.04
HORVU1Hr1G011150.1	Barley	cytosol, plastid	29.22	8.04
KXG28799	Sorghum	plastid	25.1	8.03
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	22.22	8.02
Os08t0107700-01	Rice	cytosol, mitochondrion	12.35	8.02
Os08t0110200-01	Rice	mitochondrion	26.34	8.02
Zm00001d007531_P001	Maize	plastid	26.75	7.99
TraesCS1A01G057300.1	Wheat	cytosol	23.46	7.94
TraesCS1D01G056200.1	Wheat	mitochondrion	26.75	7.88
TraesCS2D01G532600.1	Wheat	plastid	25.1	7.86
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	25.1	7.82
HORVU0Hr1G031920.1	Barley	plastid	27.57	7.79
TraesCS1D01G068900.1	Wheat	mitochondrion	25.93	7.75
TraesCS1B01G039200.1	Wheat	mitochondrion	24.69	7.65
TraesCS1D01G068600.1	Wheat	plastid	10.7	7.65
TraesCS1B01G085900.1	Wheat	mitochondrion	25.51	7.62
HORVU1Hr1G011300.3	Barley	plastid	28.81	7.61
HORVU1Hr1G011160.2	Barley	cytosol, plastid	27.98	7.6
TraesCS1D01G076500.1	Wheat	mitochondrion	20.58	7.53
TraesCS1A01G067400.1	Wheat	mitochondrion	25.51	7.52
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	25.51	7.47
HORVU1Hr1G010890.5	Barley	cytosol	27.57	7.46
TraesCS1B01G072900.2	Wheat	mitochondrion	26.75	7.45
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	23.46	7.44
TraesCSU01G089800.1	Wheat	mitochondrion	10.7	7.41
HORVU6Hr1G076780.7	Barley	mitochondrion	25.1	7.4
TraesCS6A01G311600.1	Wheat	mitochondrion	25.1	7.3
TraesCS1D01G068400.1	Wheat	mitochondrion	24.69	7.29
TraesCS1B01G071600.1	Wheat	mitochondrion	25.1	7.19
HORVU1Hr1G014060.1	Barley	plastid	26.34	7.19
TraesCS1D01G076900.1	Wheat	plastid	19.34	7.15
TraesCS1A01G073700.1	Wheat	cytosol	11.11	7.01
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	10.7	6.86
HORVU1Hr1G013810.1	Barley	plastid	23.46	6.79
Zm00001d009735_P001	Maize	cytosol	27.16	6.78
Os04t0351333-00	Rice	cytosol	24.28	6.71
TraesCS1A01G055800.1	Wheat	mitochondrion	20.99	6.61
OQU82836	Sorghum	cytosol	16.46	6.54
OQU88581	Sorghum	cytosol	29.22	6.53
TraesCS1A01G056000.1	Wheat	cytosol	10.29	6.22
Os04t0349600-01	Rice	plastid	9.88	6.2
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	8.23	6.15
TraesCS6B01G341800.2	Wheat	cytosol	9.88	6.02
TraesCS1B01G092500.1	Wheat	mitochondrion	19.34	6.0
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	17.7	6.0
TraesCS1D01G076700.1	Wheat	cytosol	8.23	5.99
OQU82832	Sorghum	cytosol	7.0	5.94
TraesCS1D01G067600.1	Wheat	cytosol	8.64	5.75
OQU82834	Sorghum	cytosol	22.22	5.61
TraesCS1A01G067800.1	Wheat	cytosol	8.23	5.35
TraesCS1B01G038600.1	Wheat	cytosol	7.82	5.23
TraesCS1A01G073800.1	Wheat	mitochondrion	6.58	4.8
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	6.58	4.68
TraesCS1D01G076400.1	Wheat	cytosol	6.17	4.13
TraesCS1A01G073600.1	Wheat	mitochondrion	6.58	4.08
TraesCS1B01G315500.1	Wheat	mitochondrion	5.35	4.05
TraesCS1D01G057800.1	Wheat	mitochondrion	5.76	3.86
TraesCS1D01G058500.1	Wheat	plastid	7.0	2.98
TraesCS1B01G038300.1	Wheat	plastid	6.17	2.75
TraesCS1B01G073200.1	Wheat	cytosol	2.88	2.31
TraesCS1D01G057700.1	Wheat	cytosol	2.88	2.15
TraesCS1A01G055600.1	Wheat	cytosol	2.47	1.85
HORVU1Hr1G011400.44	Barley	plastid	4.12	1.62
TraesCS1A01G074000.1	Wheat	mitochondrion	1.23	1.06
TraesCS2D01G532200.1	Wheat	cytosol	1.23	1.02
TraesCS1A01G055500.1	Wheat	mitochondrion	0.82	0.92
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	0.41	0.44
Os10t0497432-01	Rice	mitochondrion	0.41	0.38
TraesCS1A01G066600.1	Wheat	mitochondrion	0.0	0.0
TraesCS1D01G056600.1	Wheat	mitochondrion	0.0	0.0
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	0.0	0.0
TraesCS6B01G129100.1	Wheat	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Bra027029.1	EnsemblPlants:Bra027029.1-P	EnsemblPlantsGene:Bra027029	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1649	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	UniParc:UPI000254250C
UniProt:M4EE19	MapMan:35.1	:	:	:	:

Description

AT1G62680 (E=7e-103) | LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G63130.1); Has 26421 Blast hits to 6237 proteins in 192 species: Archae - 5; Bacteria - 22; Metazoa - 845; Fungi - 755; Plants - 23373; Viruses - 0; Other Eukaryotes - 1421 (source: NCBI BLink).

Coordinates

chrA09:+:7742058..7742789

Molecular Weight (calculated)

27016.6 Da

IEP (calculated)

4.426

GRAVY (calculated)

0.015

Length

243 amino acids

Sequence
(BLAST)

001: MLNIVTYTSL VKGLCNLGRW SDAAGLLSHF IKREISPNVI TSTALVDAFV KNGKVLEAKE LYEEMIRMSI EPDIVTYSSL INGLCMQDRV DEASEMFGLM
101: VRRGCFPDVV SYNTLINGFC KAKRVEDGMR LFREMSQRGL VSSTVTYNTL IQGFFEAGDV DMAQEVFRQM DSPDIWTYNI LLGGLCDNGE VEKALVMFED
201: LQKSEMELDI VTYTTIIHGM CKSANSSTFS GDGITGTLPS TPN

Best Arabidopsis Sequence Match ( AT1G62680.1 )
(BLAST)

001: MQRSIAMTAK RFLHRNLLEN GKPRTASSPS FSHCSSCRCW VRASSSVSGG DLRERLSKTR LRDIKLNDAI DLFSDMVKSR PFPSIVDFNR LLSAIVKLKK
101: YDVVISLGKK MEVLGIRNDL YTFNIVINCF CCCFQVSLAL SILGKMLKLG YEPDRVTIGS LVNGFCRRNR VSDAVSLVDK MVEIGYKPDI VAYNAIIDSL
201: CKTKRVNDAF DFFKEIERKG IRPNVVTYTA LVNGLCNSSR WSDAARLLSD MIKKKITPNV ITYSALLDAF VKNGKVLEAK ELFEEMVRMS IDPDIVTYSS
301: LINGLCLHDR IDEANQMFDL MVSKGCLADV VSYNTLINGF CKAKRVEDGM KLFREMSQRG LVSNTVTYNT LIQGFFQAGD VDKAQEFFSQ MDFFGISPDI
401: WTYNILLGGL CDNGELEKAL VIFEDMQKRE MDLDIVTYTT VIRGMCKTGK VEEAWSLFCS LSLKGLKPDI VTYTTMMSGL CTKGLLHEVE ALYTKMKQEG
501: LMKNDCTLSD GDITLSAELI KKMLSCGYAP SLLKDIKSGV CKKALSLL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q3ECK2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.