Factsheet for TraesCS1A01G055500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	66.82	63.6
TraesCS1A01G066600.1	Wheat	mitochondrion	65.9	54.37
TraesCS1A01G074000.1	Wheat	mitochondrion	62.67	48.06
TraesCS1A01G073800.1	Wheat	mitochondrion	64.98	42.34
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	32.26	27.67
TraesCS1A01G067700.1	Wheat	extracellular	37.79	24.33
TraesCS1A01G055800.1	Wheat	mitochondrion	74.19	20.88
TraesCS1A01G054700.2	Wheat	mitochondrion	76.04	20.32
TraesCS1A01G067600.1	Wheat	mitochondrion	74.19	19.8
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	44.7	19.28
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	42.86	19.21
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	61.29	18.55
TraesCS1A01G067400.1	Wheat	mitochondrion	70.51	18.55
TraesCS6A01G311600.1	Wheat	mitochondrion	68.66	17.82
Os04t0349600-01	Rice	plastid	31.34	17.57
TraesCS6A01G015000.1	Wheat	mitochondrion	31.34	16.39
KXG28799	Sorghum	plastid	56.68	16.18
TraesCS1A01G054500.1	Wheat	mitochondrion	54.38	15.13
Zm00001d007531_P001	Maize	plastid	55.3	14.74
Zm00001d007548_P001	Maize	plastid	54.84	14.62
Zm00001d007559_P001	Maize	plastid	54.84	14.57
Zm00001d007555_P001	Maize	plastid	54.38	14.5
TraesCS1A01G031700.1	Wheat	plastid	48.85	14.3
TraesCS2A01G530600.1	Wheat	cytosol	49.31	13.99
Zm00001d007534_P001	Maize	plastid	47.93	13.38
TraesCS1A01G073600.1	Wheat	mitochondrion	22.12	12.24
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	19.82	11.38
TraesCS1A01G057300.1	Wheat	cytosol	35.94	10.86
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	25.35	10.76
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	33.18	10.08
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	33.64	9.53
TraesCS1A01G067000.1	Wheat	mitochondrion	30.88	9.36
TraesCS2A01G531000.1	Wheat	golgi	27.19	8.69
TraesCS2A01G526200.1	Wheat	golgi	26.27	8.37
AT1G62914.1	Thale cress	mitochondrion	19.82	8.14
Bra021192.1-P	Field mustard	plastid	17.05	7.34
AT1G63400.1	Thale cress	cytosol, plastid	19.35	7.28
Bra016762.1-P	Field mustard	mitochondrion	20.28	7.25
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.74	7.25
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.2	7.14
AT1G63130.1	Thale cress	mitochondrion	20.74	7.14
Bra027726.1-P	Field mustard	mitochondrion	15.21	7.01
Bra026971.1-P	Field mustard	mitochondrion	20.28	7.0
AT1G62670.1	Thale cress	mitochondrion	20.28	6.98
AT1G63070.1	Thale cress	mitochondrion	18.89	6.95
TraesCS1A01G031600.1	Wheat	cytosol	21.2	6.95
Bra036651.1-P	Field mustard	mitochondrion	17.05	6.92
Bra027026.1-P	Field mustard	mitochondrion	16.59	6.88
Bra028267.1-P	Field mustard	mitochondrion	19.82	6.87
AT1G63080.3	Thale cress	mitochondrion	19.35	6.84
AT1G62930.1	Thale cress	plastid	19.82	6.84
AT1G12300.1	Thale cress	mitochondrion	19.82	6.75
AT1G64580.1	Thale cress	mitochondrion	16.13	6.69
AT1G63150.1	Thale cress	mitochondrion	19.35	6.68
AT1G62910.1	Thale cress	mitochondrion	19.35	6.65
AT4G26800.2	Thale cress	mitochondrion, plastid	15.67	6.61
Bra026882.1-P	Field mustard	cytosol	16.13	6.55
KRH40513	Soybean	plastid	10.6	6.55
Os04t0351333-00	Rice	cytosol	26.27	6.48
AT1G62590.1	Thale cress	mitochondrion	18.89	6.47
AT3G22470.1	Thale cress	cytosol, mitochondrion	18.43	6.46
AT1G63330.2	Thale cress	cytosol	16.59	6.44
Bra026958.1-P	Field mustard	mitochondrion	18.89	6.44
KRH39050	Soybean	mitochondrion	15.67	6.39
AT5G16640.1	Thale cress	mitochondrion	14.75	6.35
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.29	6.31
KRH17148	Soybean	mitochondrion	15.67	6.24
Bra026401.1-P	Field mustard	plastid	15.21	6.17
KRH41817	Soybean	mitochondrion	15.67	6.13
KRH09084	Soybean	plastid	14.29	6.07
Bra026954.1-P	Field mustard	mitochondrion	17.97	6.0
KRH09154	Soybean	mitochondrion	15.21	5.94
KRH08625	Soybean	plastid	15.67	5.9
VIT_14s0030g02280.t01	Wine grape	plastid	15.21	5.88
AT1G64583.1	Thale cress	mitochondrion	13.82	5.86
AT1G62680.2	Thale cress	plastid	14.75	5.84
Bra026957.1-P	Field mustard	mitochondrion	16.13	5.8
KRH08628	Soybean	plastid	14.75	5.8
AT1G62720.1	Thale cress	mitochondrion	12.9	5.77
AT1G64100.2	Thale cress	cytosol	21.2	5.71
AT5G41170.1	Thale cress	mitochondrion	13.82	5.69
PGSC0003DMT400053556	Potato	mitochondrion	11.98	5.66
AT1G12700.2	Thale cress	cytosol	16.13	5.66
KRH09097	Soybean	plastid	15.21	5.66
VIT_14s0081g00120.t01	Wine grape	plastid	15.21	5.66
AT1G06580.1	Thale cress	mitochondrion	12.9	5.6
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	13.36	5.52
AT3G16710.1	Thale cress	mitochondrion	12.9	5.52
VIT_14s0081g00270.t01	Wine grape	plastid	14.75	5.52
KRH48615	Soybean	mitochondrion	13.82	5.5
KRH08639	Soybean	mitochondrion, plastid	14.29	5.49
Bra025516.1-P	Field mustard	cytosol, mitochondrion	11.98	5.45
KRH39112	Soybean	cytosol	12.44	5.43
KRH09121	Soybean	mitochondrion	13.36	5.43
PGSC0003DMT400053185	Potato	mitochondrion	14.75	5.42
KRH09095	Soybean	plastid	14.29	5.3
KRH08277	Soybean	plastid	13.82	5.29
PGSC0003DMT400056663	Potato	plastid	14.29	5.27
Solyc06g007740.1.1	Tomato	cytosol	14.29	5.25
VIT_12s0028g02320.t01	Wine grape	mitochondrion	11.52	5.24
KRH39004	Soybean	cytosol	11.98	5.23
KRH39054	Soybean	cytosol	11.98	5.23
KRH39074	Soybean	cytosol	11.98	5.23
KRH39066	Soybean	cytosol	13.36	5.23
KRH08671	Soybean	cytosol, mitochondrion	12.9	5.06
KRH39072	Soybean	cytosol	11.52	5.04
KRH40400	Soybean	plastid	13.36	5.03
KRH08607	Soybean	cytosol	12.9	4.99
KRH08636	Soybean	cytosol	11.98	4.98
PGSC0003DMT400056665	Potato	mitochondrion	13.36	4.92
Solyc06g007300.1.1	Tomato	extracellular	13.36	4.9
PGSC0003DMT400025074	Potato	cytosol	12.44	4.89
Bra036649.1-P	Field mustard	cytosol	8.76	4.86
VIT_14s0081g00280.t01	Wine grape	mitochondrion	14.29	4.85
KRH39057	Soybean	cytosol	11.06	4.83
KRH31646	Soybean	cytosol	11.52	4.83
PGSC0003DMT400008760	Potato	mitochondrion	12.9	4.78
PGSC0003DMT400053182	Potato	cytosol	12.9	4.67
Solyc04g080120.1.1	Tomato	extracellular	12.9	4.58
Bra027658.1-P	Field mustard	cytosol, mitochondrion	11.06	4.42
KRH09085	Soybean	mitochondrion	14.29	4.4
Bra031731.1-P	Field mustard	mitochondrion	10.14	4.33
PGSC0003DMT400015293	Potato	mitochondrion	11.98	4.26
PGSC0003DMT400015298	Potato	mitochondrion	11.98	4.26
PGSC0003DMT400052971	Potato	mitochondrion	11.52	4.22
Bra027656.1-P	Field mustard	cytosol	17.97	4.14
PGSC0003DMT400008757	Potato	cytosol	9.22	4.02
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	9.22	3.96
KRH08599	Soybean	cytosol, plastid	11.52	3.74
KRH25652	Soybean	cytosol, golgi	9.22	3.7
KRH39064	Soybean	cytosol	14.75	3.3
Bra016758.1-P	Field mustard	plastid	17.51	3.28
VIT_14s0081g00110.t01	Wine grape	cytosol	6.45	2.85
PGSC0003DMT400025087	Potato	endoplasmic reticulum	6.45	2.83
Bra006187.1-P	Field mustard	plastid	3.69	2.75
KRH12873	Soybean	cytosol	8.29	2.59
PGSC0003DMT400025067	Potato	cytosol	5.53	2.52
Solyc06g007280.2.1	Tomato	cytosol	2.76	2.35
Bra026884.1-P	Field mustard	cytosol	3.69	1.74
Bra027636.1-P	Field mustard	cytosol	1.84	1.23
TraesCS1A01G054800.1	Wheat	cytosol	3.23	1.2
TraesCS1D01G076700.1	Wheat	cytosol	1.84	1.2
TraesCS1A01G067800.1	Wheat	cytosol	1.84	1.07
TraesCS1A01G073700.1	Wheat	cytosol	1.84	1.04
TraesCS1A01G056000.1	Wheat	cytosol	1.84	1.0
Solyc06g005220.2.1	Tomato	cytosol	1.84	0.99
TraesCS1A01G055600.1	Wheat	cytosol	1.38	0.92
CDX68679	Canola	cytosol	0.46	0.87
Bra027029.1-P	Field mustard	mitochondrion	0.92	0.82
Solyc06g007810.1.1	Tomato	cytosol	0.92	0.75
TraesCS2A01G531100.1	Wheat	cytosol	1.84	0.7
KXG35774	Sorghum	cytosol, mitochondrion	0.92	0.42
PGSC0003DMT400008759	Potato	cytosol	0.46	0.31
PGSC0003DMT400052977	Potato	cytosol	0.46	0.26
TraesCS6A01G014600.1	Wheat	cytosol	0.46	0.25
KRH09082	Soybean	cytosol	0.46	0.25
TraesCS6A01G083000.1	Wheat	cytosol	0.46	0.22
VIT_14s0030g02260.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1A01G055500.1	EnsemblPlantsGene:TraesCS1A01G055500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1	:

Description

No Description!

Coordinates

chr1A:+:36605149..36605802

Molecular Weight (calculated)

24031.2 Da

IEP (calculated)

9.952

GRAVY (calculated)

-0.049

Length

217 amino acids

Sequence
(BLAST)

001: MSRIHLHRRL FSSTTRPLRS WSPRAAFAAV TERVRAGALS QDDAHHLFDE LLRQATPVPG RSLDGFLAAL VRAPASGACR DGPALALALF NRVCRDESGA
101: RVAPPTIFTY GILMNCCCRA HRPDLGLAFF ARLLTTGLKA DQIAANTFLK CLCYAKRTDE AVNVLLHRMS ELGCVPNAFS YSIVLKSLCD NSMSQRALDL
201: LQMMTRWRND KSGSYTR

Best Arabidopsis Sequence Match ( AT1G12700.2 )
(BLAST)

001: MFVGYRAKTN NSAEEIMMIK RSITTNMKAL RLIQPHLLKT GSLRTDLLCT ISSFFSSCER DFSSISNGNV CFRERLRSGI VDIKKDDAIA LFQEMIRSRP
101: LPSLVDFSRF FSAIARTKQF NLVLDFCKQL ELNGIAHNIY TLNIMINCFC RCCKTCFAYS VLGKVMKLGY EPDTTTFNTL IKGLFLEGKV SEAVVLVDRM
201: VENGCQPDVV TYNSIVNGIC RSGDTSLALD LLRKMEERNV KADVFTYSTI IDSLCRDGCI DAAISLFKEM ETKGIKSSVV TYNSLVRGLC KAGKWNDGAL
301: LLKDMVSREI VPNVITFNVL LDVFVKEGKL QEANELYKEM ITRGISPNII TYNTLMDGYC MQNRLSEANN MLDLMVRNKC SPDIVTFTSL IKGYCMVKRV
401: DDGMKVFRNI SKRGLVANAV TYSILVQGFC QSGKIKLAEE LFQEMVSHGV LPDVMTYGIL LDGLCDNGKL EKALEIFEDL QKSKMDLGIV MYTTIIEGMC
501: KGGKVEDAWN LFCSLPCKGV KPNVMTYTVM ISGLCKKGSL SEANILLRKM EEDGNAPNDC TYNTLIRAHL RDGDLTASAK LIEEMKSCGF SADASSIKMV
601: IDMLLSGELD KSFLDMLS

Arabidopsis Description

ATP binding;nucleic acid binding;helicases [Source:TAIR;Acc:AT1G12700]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.