Factsheet for TraesCS1A01G056000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G055600.1	Wheat	cytosol	66.92	82.77
TraesCS1D01G057700.1	Wheat	cytosol	61.19	75.69
TraesCS1A01G067800.1	Wheat	cytosol	64.43	69.25
TraesCS1A01G073700.1	Wheat	cytosol	57.71	60.26
TraesCS1A01G054800.1	Wheat	cytosol	67.41	46.56
TraesCS6A01G014600.1	Wheat	cytosol	38.81	39.49
TraesCS1A01G054500.1	Wheat	mitochondrion	75.62	38.97
TraesCS1A01G055800.1	Wheat	mitochondrion	74.38	38.78
KXG35774	Sorghum	cytosol, mitochondrion	45.52	38.69
TraesCS2A01G531100.1	Wheat	cytosol	53.73	37.96
TraesCS1A01G054700.2	Wheat	mitochondrion	76.37	37.81
TraesCS1A01G067000.1	Wheat	mitochondrion	66.92	37.57
TraesCS1A01G057300.1	Wheat	cytosol	64.43	36.07
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	63.68	35.7
TraesCS1A01G031600.1	Wheat	cytosol	57.96	35.2
TraesCS1A01G067400.1	Wheat	mitochondrion	70.4	34.3
TraesCS1A01G067600.1	Wheat	mitochondrion	68.66	33.95
TraesCS1A01G073600.1	Wheat	mitochondrion	32.84	33.67
TraesCS6A01G311600.1	Wheat	mitochondrion	67.16	32.3
TraesCS2A01G531000.1	Wheat	golgi	54.23	32.11
TraesCS2A01G526200.1	Wheat	golgi	52.99	31.28
Zm00001d007534_P001	Maize	plastid	55.47	28.7
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	53.23	27.94
TraesCS2A01G530600.1	Wheat	cytosol	52.99	27.84
Zm00001d007555_P001	Maize	plastid	56.22	27.76
Zm00001d007531_P001	Maize	plastid	55.97	27.64
Zm00001d007548_P001	Maize	plastid	55.97	27.64
Zm00001d007559_P001	Maize	plastid	55.97	27.54
KXG28799	Sorghum	plastid	50.0	26.45
CDX68679	Canola	cytosol	7.46	26.09
Os04t0351333-00	Rice	cytosol	56.47	25.82
TraesCS1A01G031700.1	Wheat	plastid	46.27	25.1
TraesCS6A01G083000.1	Wheat	cytosol	28.11	24.78
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	39.3	22.13
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	27.61	21.72
Solyc06g007810.1.1	Tomato	cytosol	14.18	21.27
PGSC0003DMT400008759	Potato	cytosol	14.93	18.81
Bra006187.1-P	Field mustard	plastid	11.44	15.81
VIT_14s0081g00110.t01	Wine grape	cytosol	17.66	14.46
VIT_14s0030g02260.t01	Wine grape	cytosol	15.67	14.22
PGSC0003DMT400052977	Potato	cytosol	13.68	14.14
Bra026884.1-P	Field mustard	cytosol	15.42	13.51
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.67	12.83
KRH39054	Soybean	cytosol	15.67	12.68
KRH39057	Soybean	cytosol	15.67	12.68
KRH39074	Soybean	cytosol	15.67	12.68
KRH39112	Soybean	cytosol	15.67	12.68
KRH39004	Soybean	cytosol	15.42	12.47
Bra027636.1-P	Field mustard	cytosol	9.95	12.35
Solyc06g005220.2.1	Tomato	cytosol	12.44	12.32
KRH39072	Soybean	cytosol	14.93	12.1
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	15.17	12.08
Bra031731.1-P	Field mustard	mitochondrion	15.17	12.01
Bra026882.1-P	Field mustard	cytosol	15.67	11.8
KRH09082	Soybean	cytosol	11.94	11.76
KRH08636	Soybean	cytosol	15.17	11.69
KRH17148	Soybean	mitochondrion	15.67	11.56
KRH25652	Soybean	cytosol, golgi	15.42	11.48
PGSC0003DMT400008757	Potato	cytosol	14.18	11.45
KRH08671	Soybean	cytosol, mitochondrion	15.67	11.39
KRH08607	Soybean	cytosol	15.67	11.23
KRH39066	Soybean	cytosol	15.42	11.17
VIT_14s0081g00120.t01	Wine grape	plastid	16.17	11.15
KRH08625	Soybean	plastid	15.67	10.94
AT1G63330.2	Thale cress	cytosol	15.17	10.91
VIT_14s0081g00270.t01	Wine grape	plastid	15.67	10.86
KRH08639	Soybean	mitochondrion, plastid	15.17	10.8
KRH40400	Soybean	plastid	15.42	10.75
Bra036649.1-P	Field mustard	cytosol	10.45	10.74
PGSC0003DMT400025087	Potato	endoplasmic reticulum	13.18	10.71
KRH48615	Soybean	mitochondrion	14.43	10.64
KRH08628	Soybean	plastid	14.43	10.51
PGSC0003DMT400025074	Potato	cytosol	14.43	10.51
Bra025516.1-P	Field mustard	cytosol, mitochondrion	12.44	10.48
KRH08277	Soybean	plastid	14.68	10.41
PGSC0003DMT400056665	Potato	mitochondrion	15.17	10.36
Bra027658.1-P	Field mustard	cytosol, mitochondrion	13.93	10.31
PGSC0003DMT400025067	Potato	cytosol	12.19	10.29
Solyc04g080120.1.1	Tomato	extracellular	15.67	10.29
Bra027029.1-P	Field mustard	mitochondrion	6.22	10.29
VIT_12s0028g02320.t01	Wine grape	mitochondrion	12.19	10.27
PGSC0003DMT400008760	Potato	mitochondrion	14.68	10.07
AT1G62670.1	Thale cress	mitochondrion	15.67	10.0
PGSC0003DMT400053185	Potato	mitochondrion	14.68	10.0
KRH09084	Soybean	plastid	12.69	9.98
AT1G12300.1	Thale cress	mitochondrion	15.67	9.89
AT1G62930.1	Thale cress	plastid	15.42	9.86
PGSC0003DMT400015293	Potato	mitochondrion	14.93	9.84
PGSC0003DMT400015298	Potato	mitochondrion	14.93	9.84
Solyc06g007740.1.1	Tomato	cytosol	14.43	9.83
AT1G12620.1	Thale cress	cytosol, mitochondrion	15.17	9.82
Bra026958.1-P	Field mustard	mitochondrion	15.42	9.73
Bra021192.1-P	Field mustard	plastid	12.19	9.72
Bra036651.1-P	Field mustard	mitochondrion	12.94	9.72
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	12.69	9.71
Bra026971.1-P	Field mustard	mitochondrion	15.17	9.7
KRH40513	Soybean	plastid	8.46	9.69
Bra028267.1-P	Field mustard	mitochondrion	14.93	9.58
KRH41817	Soybean	mitochondrion	13.18	9.55
VIT_14s0081g00280.t01	Wine grape	mitochondrion	15.17	9.55
KRH09154	Soybean	mitochondrion	13.18	9.53
AT1G63130.1	Thale cress	mitochondrion	14.93	9.52
AT5G16640.1	Thale cress	mitochondrion	11.94	9.52
PGSC0003DMT400053182	Potato	cytosol	14.18	9.52
AT1G63070.1	Thale cress	mitochondrion	13.93	9.49
AT1G62680.2	Thale cress	plastid	12.94	9.49
AT3G16710.1	Thale cress	mitochondrion	11.94	9.47
AT1G62590.1	Thale cress	mitochondrion	14.93	9.46
Solyc06g007300.1.1	Tomato	extracellular	13.93	9.46
Bra026954.1-P	Field mustard	mitochondrion	15.17	9.38
AT3G22470.1	Thale cress	cytosol, mitochondrion	14.43	9.37
PGSC0003DMT400056663	Potato	plastid	13.68	9.35
Bra027726.1-P	Field mustard	mitochondrion	10.95	9.34
AT1G62910.1	Thale cress	mitochondrion	14.68	9.34
Bra016762.1-P	Field mustard	mitochondrion	13.93	9.23
AT1G63150.1	Thale cress	mitochondrion	14.43	9.22
AT1G63080.3	Thale cress	mitochondrion	13.93	9.12
PGSC0003DMT400052971	Potato	mitochondrion	13.43	9.11
AT1G62720.1	Thale cress	mitochondrion	10.95	9.07
AT1G12700.2	Thale cress	cytosol	13.93	9.06
KRH39050	Soybean	mitochondrion	11.94	9.02
KRH09121	Soybean	mitochondrion	11.94	8.99
KRH08599	Soybean	cytosol, plastid	14.93	8.97
KRH31646	Soybean	cytosol	11.44	8.88
Bra026957.1-P	Field mustard	mitochondrion	13.18	8.79
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	10.95	8.75
AT5G41170.1	Thale cress	mitochondrion	11.44	8.73
AT1G12775.1	Thale cress	cytosol, mitochondrion	13.93	8.7
AT1G64580.1	Thale cress	mitochondrion	11.19	8.6
AT1G64100.2	Thale cress	cytosol	16.92	8.44
Bra027026.1-P	Field mustard	mitochondrion	10.95	8.41
AT1G64583.1	Thale cress	mitochondrion	10.7	8.4
Bra027656.1-P	Field mustard	cytosol	19.4	8.29
AT1G63400.1	Thale cress	cytosol, plastid	11.69	8.15
KRH09097	Soybean	plastid	11.69	8.06
Bra026401.1-P	Field mustard	plastid	10.7	8.04
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	7.46	7.94
KRH09095	Soybean	plastid	11.44	7.86
VIT_14s0030g02280.t01	Wine grape	plastid	10.95	7.84
AT1G06580.1	Thale cress	mitochondrion	9.7	7.8
KRH09085	Soybean	mitochondrion	12.44	7.1
KRH39064	Soybean	cytosol	16.92	7.02
KRH12873	Soybean	cytosol	11.94	6.9
AT4G26800.2	Thale cress	mitochondrion, plastid	8.71	6.81
PGSC0003DMT400053556	Potato	mitochondrion	7.71	6.75
AT1G62914.1	Thale cress	mitochondrion	8.46	6.44
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	7.46	6.2
Bra016758.1-P	Field mustard	plastid	14.18	4.92
Solyc06g007280.2.1	Tomato	cytosol	2.24	3.53
TraesCS1A01G067700.1	Wheat	extracellular	2.49	2.97
TraesCS6A01G015000.1	Wheat	mitochondrion	2.99	2.89
Os04t0349600-01	Rice	plastid	2.49	2.58
TraesCS1A01G055500.1	Wheat	mitochondrion	1.0	1.84
TraesCS1A01G074000.1	Wheat	mitochondrion	0.75	1.06
TraesCS1A01G066600.1	Wheat	mitochondrion	0.5	0.76
TraesCS1D01G057800.1	Wheat	mitochondrion	0.25	0.28
TraesCS1A01G073800.1	Wheat	mitochondrion	0.0	0.0
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1A01G056000.1	EnsemblPlantsGene:TraesCS1A01G056000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1A:+:36635417..36639148

Molecular Weight (calculated)

45168.4 Da

IEP (calculated)

8.018

GRAVY (calculated)

-0.019

Length

402 amino acids

Sequence
(BLAST)

001: MSLIQWKAME RRVNPDVVTY SSIIAGLSRL GRLTEAMEKF NQMIALGVQP NKAVYHALIQ GFCIDGDLAK AKQLVYEMMD RGIPRPNISF FSSVIKSLCQ
101: EGRVMDAHDI FDLVIDMGER PDGILFNSLI DGYCLVGKMD KALKVLDVME SVGVEPDVFT YSTLVNGYCR NGRIDDGLTL FREMPRKRIK PDTVSYRVIM
201: VGLFRAGRTV AARKMFHEMI ESGTMVDIFT YNIILGGLCR NNCADEAIAL FQKLRAMNVK FDITTLNTMI NAMYNVQRKE EAKDLFATIS ASGLVPNEST
301: YRVMIKNLLE EGSVEKADSM FSLMDKSGIA PSSRLLNDII RMLLEKGEIT KAGNYLSKVD GKSISLEAST TSLMLSLFSR EGKYREDMKL LPAKYQFFDG
401: FC

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.