Factsheet for TraesCS6A01G311600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G341800.2	Wheat	cytosol	45.57	95.49
TraesCS6D01G290900.1	Wheat	mitochondrion	82.54	94.13
HORVU6Hr1G076780.7	Barley	mitochondrion	88.52	89.81
TraesCS1A01G067600.1	Wheat	mitochondrion	70.57	72.57
TraesCS1A01G073700.1	Wheat	cytosol	33.01	71.69
TraesCS1A01G067400.1	Wheat	mitochondrion	70.69	71.64
TraesCS1A01G067800.1	Wheat	cytosol	31.94	71.39
TraesCS1A01G055600.1	Wheat	cytosol	27.63	71.08
TraesCS1A01G067700.1	Wheat	extracellular	27.99	69.44
TraesCS1A01G054700.2	Wheat	mitochondrion	67.22	69.21
TraesCS1A01G067000.1	Wheat	mitochondrion	59.21	69.13
TraesCS1A01G055500.1	Wheat	mitochondrion	17.82	68.66
TraesCS1A01G073600.1	Wheat	mitochondrion	32.18	68.62
TraesCS1A01G073800.1	Wheat	mitochondrion	27.15	68.17
TraesCS1A01G054800.1	Wheat	cytosol	47.37	68.04
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	58.13	67.78
TraesCS1A01G055800.1	Wheat	mitochondrion	62.2	67.44
TraesCS1A01G056000.1	Wheat	cytosol	32.3	67.16
TraesCS1A01G054500.1	Wheat	mitochondrion	61.12	65.51
TraesCS1A01G057300.1	Wheat	cytosol	55.74	64.9
TraesCS1A01G066600.1	Wheat	mitochondrion	20.22	64.26
TraesCS1A01G031600.1	Wheat	cytosol	48.8	61.63
TraesCS1A01G074000.1	Wheat	mitochondrion	20.33	60.07
KXG28799	Sorghum	plastid	52.63	57.89
TraesCS1A01G031700.1	Wheat	plastid	50.6	57.09
TraesCS2A01G530600.1	Wheat	cytosol	52.03	56.86
Zm00001d007548_P001	Maize	plastid	55.14	56.63
Zm00001d007559_P001	Maize	plastid	55.26	56.55
Zm00001d007531_P001	Maize	plastid	54.78	56.27
Zm00001d007534_P001	Maize	plastid	52.27	56.24
Zm00001d007555_P001	Maize	plastid	54.55	56.02
TraesCS2A01G531000.1	Wheat	golgi	45.45	55.96
TraesCS2A01G526200.1	Wheat	golgi	45.33	55.65
TraesCS2A01G531100.1	Wheat	cytosol	37.8	55.54
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	33.85	55.38
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	47.97	52.35
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	30.14	52.07
KXG35774	Sorghum	cytosol, mitochondrion	28.95	51.16
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	22.73	50.26
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	29.9	49.7
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	39.47	46.22
TraesCS6A01G014600.1	Wheat	cytosol	21.65	45.82
Os04t0351333-00	Rice	cytosol	46.17	43.91
TraesCS6A01G015000.1	Wheat	mitochondrion	21.77	43.86
Os04t0349600-01	Rice	plastid	20.22	43.67
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	13.16	43.48
TraesCS6A01G083000.1	Wheat	cytosol	22.97	42.11
Solyc06g007280.2.1	Tomato	cytosol	10.41	34.12
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.42	32.29
KRH39074	Soybean	cytosol	19.14	32.19
KRH39054	Soybean	cytosol	18.78	31.59
VIT_14s0081g00110.t01	Wine grape	cytosol	18.42	31.36
KRH39057	Soybean	cytosol	18.54	31.19
Solyc06g005220.2.1	Tomato	cytosol	14.95	30.79
KRH39004	Soybean	cytosol	18.3	30.78
KRH39112	Soybean	cytosol	18.3	30.78
KRH39072	Soybean	cytosol	18.18	30.65
Bra027636.1-P	Field mustard	cytosol	11.84	30.56
KRH09154	Soybean	mitochondrion	19.62	29.5
KRH40513	Soybean	plastid	12.32	29.34
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	17.7	29.31
KRH48615	Soybean	mitochondrion	19.02	29.17
VIT_14s0081g00120.t01	Wine grape	plastid	20.33	29.16
PGSC0003DMT400052977	Potato	cytosol	13.52	29.05
KRH17148	Soybean	mitochondrion	18.9	28.99
Bra006187.1-P	Field mustard	plastid	10.05	28.87
PGSC0003DMT400008759	Potato	cytosol	11.0	28.84
KRH08671	Soybean	cytosol, mitochondrion	19.02	28.75
KRH08277	Soybean	plastid	19.5	28.75
Solyc06g007810.1.1	Tomato	cytosol	9.21	28.73
KRH08639	Soybean	mitochondrion, plastid	19.38	28.67
KRH08628	Soybean	plastid	18.9	28.62
VIT_14s0081g00270.t01	Wine grape	plastid	19.86	28.62
KRH09084	Soybean	plastid	17.46	28.57
KRH08636	Soybean	cytosol	17.7	28.35
AT1G63330.2	Thale cress	cytosol	18.9	28.26
Bra026884.1-P	Field mustard	cytosol	15.43	28.1
KRH08607	Soybean	cytosol	18.78	27.99
KRH39066	Soybean	cytosol	18.54	27.93
PGSC0003DMT400008757	Potato	cytosol	16.63	27.91
Bra026882.1-P	Field mustard	cytosol	17.82	27.9
KRH40400	Soybean	plastid	19.14	27.73
KRH08625	Soybean	plastid	18.78	27.26
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.81	27.23
KRH41817	Soybean	mitochondrion	18.06	27.21
KRH09082	Soybean	cytosol	13.28	27.21
AT5G16640.1	Thale cress	mitochondrion	16.39	27.18
AT1G62670.1	Thale cress	mitochondrion	20.45	27.14
Bra036649.1-P	Field mustard	cytosol	12.68	27.11
AT1G63400.1	Thale cress	cytosol, plastid	18.66	27.04
PGSC0003DMT400056665	Potato	mitochondrion	19.02	26.99
AT1G63130.1	Thale cress	mitochondrion	20.33	26.98
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.98	26.98
PGSC0003DMT400053185	Potato	mitochondrion	19.02	26.95
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.46	26.89
PGSC0003DMT400025087	Potato	endoplasmic reticulum	15.91	26.87
KRH25652	Soybean	cytosol, golgi	17.34	26.85
KRH39050	Soybean	mitochondrion	16.99	26.69
Bra021192.1-P	Field mustard	plastid	16.03	26.59
AT1G62930.1	Thale cress	plastid	19.98	26.55
PGSC0003DMT400056663	Potato	plastid	18.66	26.53
PGSC0003DMT400025067	Potato	cytosol	15.07	26.47
PGSC0003DMT400025074	Potato	cytosol	17.46	26.45
AT1G63080.3	Thale cress	mitochondrion	19.38	26.38
AT1G12300.1	Thale cress	mitochondrion	20.1	26.37
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	16.51	26.29
Solyc06g007740.1.1	Tomato	cytosol	18.54	26.27
KRH09121	Soybean	mitochondrion	16.75	26.22
VIT_14s0030g02280.t01	Wine grape	plastid	17.58	26.2
Bra016762.1-P	Field mustard	mitochondrion	19.02	26.19
AT1G63070.1	Thale cress	mitochondrion	18.42	26.1
CDX68679	Canola	cytosol	3.59	26.09
AT1G62590.1	Thale cress	mitochondrion	19.74	26.03
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.26	25.93
KRH31646	Soybean	cytosol	16.03	25.87
Bra036651.1-P	Field mustard	mitochondrion	16.51	25.79
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.86	25.78
AT1G62720.1	Thale cress	mitochondrion	14.95	25.77
AT1G62910.1	Thale cress	mitochondrion	19.38	25.63
Bra025516.1-P	Field mustard	cytosol, mitochondrion	14.59	25.58
Bra026971.1-P	Field mustard	mitochondrion	19.14	25.44
Bra026954.1-P	Field mustard	mitochondrion	19.74	25.38
Solyc06g007300.1.1	Tomato	extracellular	17.94	25.34
PGSC0003DMT400053182	Potato	cytosol	18.06	25.21
AT1G64583.1	Thale cress	mitochondrion	15.43	25.2
AT1G62914.1	Thale cress	mitochondrion	15.91	25.19
Solyc04g080120.1.1	Tomato	extracellular	18.42	25.16
PGSC0003DMT400052971	Potato	mitochondrion	17.82	25.13
AT1G63150.1	Thale cress	mitochondrion	18.9	25.12
Bra027029.1-P	Field mustard	mitochondrion	7.3	25.1
AT1G64580.1	Thale cress	mitochondrion	15.67	25.05
KRH09095	Soybean	plastid	17.46	24.96
Bra028267.1-P	Field mustard	mitochondrion	18.66	24.92
PGSC0003DMT400008760	Potato	mitochondrion	17.34	24.74
AT3G16710.1	Thale cress	mitochondrion	14.95	24.65
Bra026958.1-P	Field mustard	mitochondrion	18.78	24.65
PGSC0003DMT400015293	Potato	mitochondrion	17.94	24.59
PGSC0003DMT400015298	Potato	mitochondrion	17.94	24.59
KRH09097	Soybean	plastid	17.11	24.53
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.35	24.44
Bra031731.1-P	Field mustard	mitochondrion	14.83	24.41
Bra027026.1-P	Field mustard	mitochondrion	15.19	24.28
AT1G12700.2	Thale cress	cytosol	17.7	23.95
AT1G62680.2	Thale cress	plastid	15.67	23.91
KRH08599	Soybean	cytosol, plastid	18.9	23.62
AT1G06580.1	Thale cress	mitochondrion	14.0	23.4
AT5G41170.1	Thale cress	mitochondrion	14.71	23.34
Bra026957.1-P	Field mustard	mitochondrion	16.75	23.22
Bra026401.1-P	Field mustard	plastid	14.83	23.18
PGSC0003DMT400053556	Potato	mitochondrion	12.44	22.66
AT1G64100.2	Thale cress	cytosol	21.65	22.46
VIT_14s0030g02260.t01	Wine grape	cytosol	11.72	22.12
AT4G26800.2	Thale cress	mitochondrion, plastid	13.52	21.98
Bra027726.1-P	Field mustard	mitochondrion	12.2	21.66
KRH09085	Soybean	mitochondrion	17.82	21.16
Bra027656.1-P	Field mustard	cytosol	22.73	20.19
KRH12873	Soybean	cytosol	16.39	19.68
KRH39064	Soybean	cytosol	20.1	17.34
Bra016758.1-P	Field mustard	plastid	18.9	13.63

Protein Annotations

EnsemblPlants:TraesCS6A01G311600.1	EnsemblPlantsGene:TraesCS6A01G311600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:547815084..547817594

Molecular Weight (calculated)

92598.2 Da

IEP (calculated)

8.592

GRAVY (calculated)

0.009

Length

836 amino acids

Sequence
(BLAST)

001: MSRLRHSTST APMSRLRHST STAPMPHLRL LRCRSSSIST LPPSRSWSPV TAFAAATERV SAGTLSPEDA HRLFDELLRQ ATPVPARSLN GFLTALSRAP
101: GTGACGDGPA LALALFNRTR REEAGSRVVP STIFTYGILM NCCRRTRRPE LGLAFFGRVL RMGLRTNVVV ATTVLQCLCG AKRTDEAVDI LLHRMSELGC
201: VPDAFSYSIV LKSLCDDGRS QRALDLLHMW EKERGLCSPN VVMYNTVIHD FFKEGEVSKA CSLFHEMEQK GVVPNVVTYS LTIDALCKAR AMDKAQLFLR
301: QMIDKGVRPN NVTYNVMIHG YCTLGQWKEA RKMFREMTRQ GLIPDIVTWT SFMASLCKHG RTKEAAEFFD SMTAKGHKPD LVMYHVLLHG YATKGCFADM
401: INLFNSMATK GIVPDRQVFN ILIDAHAKHG MMDEAMHIFT GMQGQGVCPD VWTYSTLISA LCRMGRLADA MDNFSQMIGK GVQPNTVVYH SLIQGFSTHG
501: DLRKAKELVY EMTNKGIPCP NIAFFSSVMD GICKEGRVMD AHDIFHLVTD IGLKPNIITF NTLIDGHCLV GEMEKAFGVL DSMVSAGIEA DVFTYNTLAY
601: GYCRCGRIDD GLILFREMLQ NKPKPTTITY NIILDGLFRA GRTFAAKKMF VEMIETGITV SISTYSIILG GLCRNNCSDE AITLFQKLGA MNVKFDIKIL
701: NTMINAMFKV RRREEANGLF AAISASGMVP NTSTYSVMIG NLLKEGSVEE AENMFSLMEK SGCAPDSRLI NNIIRILLEN GDIVKAGNYM SKVDGKSISL
801: EASTTSLLMC LFSSKGKYRE QISLLPVNYQ FFNGVG

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.