Factsheet for TraesCS1A01G067700.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G073800.1	Wheat	mitochondrion	47.77	48.35
TraesCS1B01G086000.1	Wheat	plastid	93.77	46.06
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	48.37	43.12
TraesCS1D01G069100.1	Wheat	mitochondrion	76.56	40.12
TraesCS1A01G066600.1	Wheat	mitochondrion	30.86	39.54
TraesCS6A01G015000.1	Wheat	mitochondrion	47.48	38.55
TraesCS1A01G055500.1	Wheat	mitochondrion	24.33	37.79
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	54.9	36.78
TraesCS1A01G074000.1	Wheat	mitochondrion	30.86	36.75
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	51.63	35.95
HORVU1Hr1G014060.1	Barley	plastid	91.99	34.83
TraesCS1A01G073600.1	Wheat	mitochondrion	40.06	34.44
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	51.63	34.05
Solyc06g007280.2.1	Tomato	cytosol	24.33	32.16
TraesCS1A01G067600.1	Wheat	mitochondrion	76.56	31.73
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	23.44	31.23
Os04t0349600-01	Rice	plastid	35.31	30.75
TraesCS1A01G067000.1	Wheat	mitochondrion	64.99	30.59
TraesCS1A01G057300.1	Wheat	cytosol	64.99	30.5
TraesCS1A01G067400.1	Wheat	mitochondrion	74.18	30.3
TraesCS1A01G054500.1	Wheat	mitochondrion	70.03	30.26
TraesCS1A01G054700.2	Wheat	mitochondrion	70.03	29.06
TraesCS1A01G054800.1	Wheat	cytosol	49.55	28.69
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	60.53	28.45
TraesCS6A01G311600.1	Wheat	mitochondrion	69.44	27.99
TraesCS1A01G031600.1	Wheat	cytosol	51.63	26.28
TraesCS2A01G531000.1	Wheat	golgi	52.82	26.21
TraesCS1A01G031700.1	Wheat	plastid	55.79	25.37
TraesCS2A01G526200.1	Wheat	golgi	50.45	24.96
KXG28799	Sorghum	plastid	55.19	24.47
TraesCS1A01G055800.1	Wheat	mitochondrion	55.79	24.38
TraesCS2A01G530600.1	Wheat	cytosol	53.71	23.66
Zm00001d007531_P001	Maize	plastid	55.79	23.1
Zm00001d007555_P001	Maize	plastid	54.6	22.6
Zm00001d007548_P001	Maize	plastid	53.71	22.24
Zm00001d007559_P001	Maize	plastid	53.71	22.15
KRH40513	Soybean	plastid	22.85	21.94
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	45.99	21.71
Zm00001d007534_P001	Maize	plastid	48.66	21.11
VIT_12s0028g02320.t01	Wine grape	mitochondrion	29.38	20.75
Solyc06g005220.2.1	Tomato	cytosol	24.33	20.2
TraesCS2A01G531100.1	Wheat	cytosol	33.83	20.04
VIT_14s0081g00110.t01	Wine grape	cytosol	29.08	19.96
KRH39054	Soybean	cytosol	28.49	19.32
KRH39112	Soybean	cytosol	28.49	19.32
KRH39072	Soybean	cytosol	28.19	19.15
KRH39074	Soybean	cytosol	28.19	19.11
KRH39004	Soybean	cytosol	27.89	18.91
KRH39057	Soybean	cytosol	27.89	18.91
KRH09084	Soybean	plastid	28.49	18.79
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	42.43	18.67
KRH39050	Soybean	mitochondrion	29.38	18.61
KRH09121	Soybean	mitochondrion	29.38	18.54
TraesCS6A01G083000.1	Wheat	cytosol	24.93	18.42
Bra036649.1-P	Field mustard	cytosol	21.36	18.41
PGSC0003DMT400025067	Potato	cytosol	25.82	18.28
Bra027636.1-P	Field mustard	cytosol	17.51	18.21
AT1G62914.1	Thale cress	mitochondrion	28.49	18.18
Bra027029.1-P	Field mustard	mitochondrion	13.06	18.11
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	27.0	18.02
PGSC0003DMT400052977	Potato	cytosol	20.77	17.99
PGSC0003DMT400025087	Potato	endoplasmic reticulum	26.41	17.98
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	27.89	17.9
Bra026884.1-P	Field mustard	cytosol	24.04	17.65
VIT_14s0030g02280.t01	Wine grape	plastid	29.38	17.65
KRH08636	Soybean	cytosol	27.3	17.62
KRH41817	Soybean	mitochondrion	28.78	17.48
KRH09082	Soybean	cytosol	21.07	17.4
KRH08607	Soybean	cytosol	28.78	17.29
KRH31646	Soybean	cytosol	26.41	17.18
Solyc06g007740.1.1	Tomato	cytosol	29.97	17.12
KRH39066	Soybean	cytosol	28.19	17.12
Bra026882.1-P	Field mustard	cytosol	26.71	16.85
KRH08628	Soybean	plastid	27.6	16.85
KRH08639	Soybean	mitochondrion, plastid	28.19	16.81
PGSC0003DMT400053556	Potato	mitochondrion	22.85	16.78
KRH17148	Soybean	mitochondrion	27.0	16.7
AT1G63400.1	Thale cress	cytosol, plastid	28.49	16.64
AT1G63330.2	Thale cress	cytosol	27.6	16.64
PGSC0003DMT400053185	Potato	mitochondrion	29.08	16.61
AT1G12620.1	Thale cress	cytosol, mitochondrion	30.56	16.59
KRH09095	Soybean	plastid	28.78	16.58
VIT_14s0081g00270.t01	Wine grape	plastid	28.49	16.55
VIT_14s0081g00120.t01	Wine grape	plastid	28.49	16.47
PGSC0003DMT400008757	Potato	cytosol	24.33	16.47
KRH08671	Soybean	cytosol, mitochondrion	27.0	16.46
AT1G63080.3	Thale cress	mitochondrion	29.97	16.45
AT1G12300.1	Thale cress	mitochondrion	30.86	16.33
PGSC0003DMT400025074	Potato	cytosol	26.71	16.3
KRH25652	Soybean	cytosol, golgi	26.11	16.3
KRH09097	Soybean	plastid	28.19	16.3
Solyc06g007300.1.1	Tomato	extracellular	28.49	16.22
AT3G22470.1	Thale cress	cytosol, mitochondrion	29.67	16.16
KRH48615	Soybean	mitochondrion	26.11	16.15
KRH40400	Soybean	plastid	27.6	16.12
AT5G16640.1	Thale cress	mitochondrion	24.04	16.07
KRH08625	Soybean	plastid	27.3	15.97
AT1G62670.1	Thale cress	mitochondrion	29.67	15.87
KRH08277	Soybean	plastid	26.71	15.87
Bra026958.1-P	Field mustard	mitochondrion	29.97	15.86
KRH09154	Soybean	mitochondrion	26.11	15.83
Os04t0351333-00	Rice	cytosol	41.25	15.81
VIT_14s0081g00280.t01	Wine grape	mitochondrion	29.97	15.81
PGSC0003DMT400056665	Potato	mitochondrion	27.6	15.79
AT1G63130.1	Thale cress	mitochondrion	29.38	15.71
AT5G41170.1	Thale cress	mitochondrion	24.33	15.56
PGSC0003DMT400052971	Potato	mitochondrion	27.3	15.51
PGSC0003DMT400056663	Potato	plastid	27.0	15.48
Bra026971.1-P	Field mustard	mitochondrion	28.78	15.42
AT1G62930.1	Thale cress	plastid	28.49	15.26
KXG35774	Sorghum	cytosol, mitochondrion	21.36	15.22
AT1G12775.1	Thale cress	cytosol, mitochondrion	29.08	15.22
AT1G62910.1	Thale cress	mitochondrion	28.49	15.19
PGSC0003DMT400008760	Potato	mitochondrion	26.41	15.19
Bra026957.1-P	Field mustard	mitochondrion	27.0	15.09
AT1G63070.1	Thale cress	mitochondrion	26.41	15.08
Bra026954.1-P	Field mustard	mitochondrion	29.08	15.08
AT1G06580.1	Thale cress	mitochondrion	22.26	15.0
Bra028267.1-P	Field mustard	mitochondrion	27.3	14.7
AT1G62590.1	Thale cress	mitochondrion	27.6	14.67
AT1G64583.1	Thale cress	mitochondrion	22.26	14.65
AT1G62720.1	Thale cress	mitochondrion	21.07	14.64
AT1G63150.1	Thale cress	mitochondrion	27.3	14.63
Bra036651.1-P	Field mustard	mitochondrion	23.15	14.58
PGSC0003DMT400053182	Potato	cytosol	25.82	14.52
Bra021192.1-P	Field mustard	plastid	21.66	14.48
Bra027026.1-P	Field mustard	mitochondrion	22.26	14.34
Bra016762.1-P	Field mustard	mitochondrion	25.52	14.17
AT1G12700.2	Thale cress	cytosol	25.82	14.08
Solyc04g080120.1.1	Tomato	extracellular	25.52	14.05
AT1G64580.1	Thale cress	mitochondrion	21.66	13.96
PGSC0003DMT400015293	Potato	mitochondrion	25.22	13.93
PGSC0003DMT400015298	Potato	mitochondrion	25.22	13.93
Bra025516.1-P	Field mustard	cytosol, mitochondrion	19.58	13.84
Bra027658.1-P	Field mustard	cytosol, mitochondrion	22.26	13.81
Bra031731.1-P	Field mustard	mitochondrion	20.77	13.78
AT4G26800.2	Thale cress	mitochondrion, plastid	20.77	13.62
Bra026836.1-P	Field mustard	cytosol, mitochondrion	19.58	13.44
KRH09085	Soybean	mitochondrion	27.6	13.21
AT1G62680.2	Thale cress	plastid	21.36	13.14
KRH08599	Soybean	cytosol, plastid	25.82	13.0
Bra026401.1-P	Field mustard	plastid	20.18	12.71
AT1G64100.2	Thale cress	cytosol	30.27	12.66
AT3G16710.1	Thale cress	mitochondrion	18.99	12.62
PGSC0003DMT400008759	Potato	cytosol	11.87	12.54
Bra006187.1-P	Field mustard	plastid	10.68	12.37
KRH12873	Soybean	cytosol	25.22	12.21
TraesCS1A01G073700.1	Wheat	cytosol	12.46	10.91
TraesCS6A01G014600.1	Wheat	cytosol	12.76	10.89
Bra027656.1-P	Field mustard	cytosol	28.78	10.31
VIT_14s0030g02260.t01	Wine grape	cytosol	13.06	9.93
KRH39064	Soybean	cytosol	28.19	9.8
Bra027726.1-P	Field mustard	mitochondrion	13.65	9.77
Solyc06g007810.1.1	Tomato	cytosol	7.12	8.96
Bra016758.1-P	Field mustard	plastid	29.08	8.46
TraesCS1A01G056000.1	Wheat	cytosol	2.97	2.49
TraesCS1A01G067800.1	Wheat	cytosol	0.3	0.27
CDX68679	Canola	cytosol	0.0	0.0
TraesCS1A01G055600.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1A01G067700.1	EnsemblPlantsGene:TraesCS1A01G067700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1	:

Description

No Description!

Coordinates

chr1A:+:49355113..49356126

Molecular Weight (calculated)

37031.5 Da

IEP (calculated)

8.110

GRAVY (calculated)

0.103

Length

337 amino acids

Sequence
(BLAST)

001: MRVAPPTIFT YGILMNCCCR MGRPDLGLAY FGRILRAGLK ANQIAANTVI KCLCCAKHTD EAVNMLLHRM SDLGCVPDAF SYNTVLKSLC EDGRSLQALD
101: LLLQMASKEG GACSPDMVAY STVIHGFLKE GKVDKACNLF DEMMRQGVVP DVVTYSSIID ALCKAGAMYK AELFLRQMVD DGVRPDEVTY TSMIHGYSTL
201: GRWKQVRKMF REMTSRGLIP DTVTWNSFMD SLCKHGRTKE AAEVFFSMAG KGSKPNIVSY TILLHGYANE GSFADMMSLF NSMKGGGIVA NCKVFNILIG
301: AYAKRGLIDE AMLILTEMRG QGLSPDVVTY STLISAH

Best Arabidopsis Sequence Match ( AT1G62590.1 )
(BLAST)

001: MRISISSVVS STTSRIVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHDMKLDDAI GLFGGMVKSR PLPSIVEFNK LLSAIAKMKK
101: FDVVISLGEK MQRLEIVHGL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
301: LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV
401: VTYNTLIKGF CKSKRVEDGT ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL CNNGKLEKAL EVFDYMQKSE
501: IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
601: MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62590 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.