Factsheet for TraesCS1A01G055600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G056000.1	Wheat	cytosol	82.77	66.92
TraesCS1A01G067800.1	Wheat	cytosol	69.85	60.7
TraesCS1D01G076700.1	Wheat	cytosol	59.38	57.78
TraesCS1A01G073700.1	Wheat	cytosol	57.54	48.57
TraesCS1A01G054800.1	Wheat	cytosol	73.54	41.07
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	76.0	34.45
TraesCS1A01G055800.1	Wheat	mitochondrion	81.23	34.24
TraesCS1A01G054500.1	Wheat	mitochondrion	82.15	34.23
TraesCS1A01G073600.1	Wheat	mitochondrion	40.0	33.16
TraesCS1A01G054700.2	Wheat	mitochondrion	82.15	32.88
TraesCS1A01G067000.1	Wheat	mitochondrion	70.46	31.98
TraesCS2A01G531100.1	Wheat	cytosol	54.46	31.11
KXG35774	Sorghum	cytosol, mitochondrion	45.23	31.08
TraesCS1A01G057300.1	Wheat	cytosol	67.38	30.5
TraesCS6A01G014600.1	Wheat	cytosol	36.31	29.87
TraesCS1A01G067400.1	Wheat	mitochondrion	72.31	28.48
TraesCS1A01G067600.1	Wheat	mitochondrion	70.77	28.29
TraesCS1A01G031600.1	Wheat	cytosol	56.92	27.95
TraesCS6A01G311600.1	Wheat	mitochondrion	71.08	27.63
TraesCS2A01G531000.1	Wheat	golgi	53.54	25.63
TraesCS2A01G526200.1	Wheat	golgi	53.23	25.4
Zm00001d007534_P001	Maize	plastid	56.62	23.68
CDX68679	Canola	cytosol	8.31	23.48
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	54.77	23.24
Zm00001d007559_P001	Maize	plastid	57.85	23.01
Zm00001d007555_P001	Maize	plastid	57.54	22.97
Zm00001d007548_P001	Maize	plastid	57.23	22.85
Zm00001d007531_P001	Maize	plastid	56.62	22.6
TraesCS2A01G530600.1	Wheat	cytosol	52.31	22.22
Os04t0351333-00	Rice	cytosol	59.38	21.96
KXG28799	Sorghum	plastid	48.62	20.79
TraesCS1A01G031700.1	Wheat	plastid	44.31	19.43
TraesCS6A01G083000.1	Wheat	cytosol	26.46	18.86
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	36.62	16.67
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	24.92	15.85
Solyc06g007810.1.1	Tomato	cytosol	11.38	13.81
PGSC0003DMT400008759	Potato	cytosol	11.69	11.91
VIT_14s0030g02260.t01	Wine grape	cytosol	13.23	9.71
PGSC0003DMT400052977	Potato	cytosol	11.08	9.25
VIT_14s0081g00110.t01	Wine grape	cytosol	13.23	8.76
KRH39057	Soybean	cytosol	13.23	8.65
KRH09082	Soybean	cytosol	10.77	8.58
KRH39054	Soybean	cytosol	12.92	8.45
KRH39004	Soybean	cytosol	12.62	8.25
KRH39074	Soybean	cytosol	12.62	8.25
Solyc06g005220.2.1	Tomato	cytosol	10.15	8.13
KRH39072	Soybean	cytosol	12.31	8.06
KRH39112	Soybean	cytosol	12.31	8.05
Bra006187.1-P	Field mustard	plastid	7.08	7.9
KRH09084	Soybean	plastid	12.31	7.83
KRH17148	Soybean	mitochondrion	12.92	7.71
PGSC0003DMT400025074	Potato	cytosol	12.92	7.61
PGSC0003DMT400025067	Potato	cytosol	11.08	7.56
Bra026882.1-P	Field mustard	cytosol	12.31	7.49
Bra031731.1-P	Field mustard	mitochondrion	11.69	7.48
PGSC0003DMT400008757	Potato	cytosol	11.38	7.43
Bra026884.1-P	Field mustard	cytosol	10.46	7.41
KRH39066	Soybean	cytosol	12.62	7.39
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	11.38	7.33
PGSC0003DMT400025087	Potato	endoplasmic reticulum	11.08	7.27
KRH25652	Soybean	cytosol, golgi	12.0	7.22
Solyc04g080120.1.1	Tomato	extracellular	13.54	7.19
Bra026836.1-P	Field mustard	cytosol, mitochondrion	10.77	7.13
KRH08625	Soybean	plastid	12.62	7.12
KRH08636	Soybean	cytosol	11.38	7.09
KRH08639	Soybean	mitochondrion, plastid	12.31	7.08
KRH08628	Soybean	plastid	12.0	7.07
KRH08671	Soybean	cytosol, mitochondrion	12.0	7.05
Solyc06g007740.1.1	Tomato	cytosol	12.62	6.95
PGSC0003DMT400008760	Potato	mitochondrion	12.31	6.83
AT1G63330.2	Thale cress	cytosol	11.69	6.8
Bra027636.1-P	Field mustard	cytosol	6.77	6.79
KRH40400	Soybean	plastid	12.0	6.76
VIT_14s0081g00270.t01	Wine grape	plastid	12.0	6.72
VIT_14s0081g00120.t01	Wine grape	plastid	12.0	6.69
AT1G62930.1	Thale cress	plastid	12.92	6.68
KRH09154	Soybean	mitochondrion	11.38	6.65
PGSC0003DMT400056665	Potato	mitochondrion	12.0	6.62
KRH48615	Soybean	mitochondrion	11.08	6.61
KRH09121	Soybean	mitochondrion	10.77	6.55
PGSC0003DMT400053182	Potato	cytosol	12.0	6.51
AT1G63130.1	Thale cress	mitochondrion	12.62	6.51
Bra027658.1-P	Field mustard	cytosol, mitochondrion	10.77	6.45
AT1G63070.1	Thale cress	mitochondrion	11.69	6.44
PGSC0003DMT400053185	Potato	mitochondrion	11.69	6.44
Solyc06g007300.1.1	Tomato	extracellular	11.69	6.42
KRH08607	Soybean	cytosol	11.08	6.42
PGSC0003DMT400015293	Potato	mitochondrion	12.0	6.39
PGSC0003DMT400015298	Potato	mitochondrion	12.0	6.39
KRH08277	Soybean	plastid	11.08	6.35
KRH09097	Soybean	plastid	11.38	6.35
KRH41817	Soybean	mitochondrion	10.77	6.31
VIT_14s0081g00280.t01	Wine grape	mitochondrion	12.31	6.26
PGSC0003DMT400056663	Potato	plastid	11.08	6.12
PGSC0003DMT400052971	Potato	mitochondrion	11.08	6.07
AT1G62670.1	Thale cress	mitochondrion	11.69	6.03
AT1G62910.1	Thale cress	mitochondrion	11.69	6.01
KRH09095	Soybean	plastid	10.77	5.98
AT3G22470.1	Thale cress	cytosol, mitochondrion	11.38	5.98
AT1G12300.1	Thale cress	mitochondrion	11.69	5.97
AT1G62590.1	Thale cress	mitochondrion	11.38	5.84
AT1G12700.2	Thale cress	cytosol	11.08	5.83
KRH31646	Soybean	cytosol	9.23	5.79
Bra021192.1-P	Field mustard	plastid	8.92	5.75
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	9.23	5.71
KRH08599	Soybean	cytosol, plastid	11.69	5.68
Bra026958.1-P	Field mustard	mitochondrion	11.08	5.65
AT1G12620.1	Thale cress	cytosol, mitochondrion	10.77	5.64
Bra027656.1-P	Field mustard	cytosol	16.31	5.63
Bra016762.1-P	Field mustard	mitochondrion	10.46	5.6
AT1G12775.1	Thale cress	cytosol, mitochondrion	11.08	5.59
AT1G64100.2	Thale cress	cytosol	13.85	5.58
AT1G63150.1	Thale cress	mitochondrion	10.77	5.56
Bra026971.1-P	Field mustard	mitochondrion	10.77	5.56
KRH09085	Soybean	mitochondrion	12.0	5.54
AT1G63080.3	Thale cress	mitochondrion	10.46	5.54
VIT_12s0028g02320.t01	Wine grape	mitochondrion	8.0	5.45
Bra028267.1-P	Field mustard	mitochondrion	10.46	5.43
Bra026954.1-P	Field mustard	mitochondrion	10.77	5.38
AT3G16710.1	Thale cress	mitochondrion	8.31	5.33
Bra027726.1-P	Field mustard	mitochondrion	7.69	5.31
Bra036651.1-P	Field mustard	mitochondrion	8.62	5.23
Bra026957.1-P	Field mustard	mitochondrion	9.54	5.14
AT1G62680.2	Thale cress	plastid	8.62	5.11
Bra026401.1-P	Field mustard	plastid	8.31	5.05
Bra036649.1-P	Field mustard	cytosol	5.85	4.86
Bra025516.1-P	Field mustard	cytosol, mitochondrion	7.08	4.82
AT1G62720.1	Thale cress	mitochondrion	7.08	4.74
KRH39064	Soybean	cytosol	13.85	4.64
Bra027026.1-P	Field mustard	mitochondrion	7.38	4.59
AT5G16640.1	Thale cress	mitochondrion	7.08	4.56
AT5G41170.1	Thale cress	mitochondrion	7.38	4.55
AT1G64583.1	Thale cress	mitochondrion	7.08	4.49
AT1G64580.1	Thale cress	mitochondrion	7.08	4.4
AT1G63400.1	Thale cress	cytosol, plastid	7.69	4.33
KRH12873	Soybean	cytosol	9.23	4.31
KRH39050	Soybean	mitochondrion	6.77	4.14
AT1G06580.1	Thale cress	mitochondrion	6.15	4.0
VIT_14s0030g02280.t01	Wine grape	plastid	6.46	3.74
AT4G26800.2	Thale cress	mitochondrion, plastid	5.54	3.5
Bra016758.1-P	Field mustard	plastid	10.46	2.93
KRH40513	Soybean	plastid	3.08	2.85
Bra027029.1-P	Field mustard	mitochondrion	1.85	2.47
PGSC0003DMT400053556	Potato	mitochondrion	3.38	2.4
Os04t0349600-01	Rice	plastid	2.77	2.33
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	3.08	1.99
AT1G62914.1	Thale cress	mitochondrion	2.77	1.7
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	1.85	1.59
TraesCS1A01G055500.1	Wheat	mitochondrion	0.92	1.38
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	1.54	1.03
TraesCS1A01G066600.1	Wheat	mitochondrion	0.62	0.76
TraesCS1A01G074000.1	Wheat	mitochondrion	0.31	0.35
Solyc06g007280.2.1	Tomato	cytosol	0.0	0.0
TraesCS1A01G067700.1	Wheat	extracellular	0.0	0.0
TraesCS1A01G073800.1	Wheat	mitochondrion	0.0	0.0
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	0.0	0.0
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	0.0	0.0
TraesCS6A01G015000.1	Wheat	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1A01G055600.1	EnsemblPlantsGene:TraesCS1A01G055600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1A:+:36606299..36607276

Molecular Weight (calculated)

36120.2 Da

IEP (calculated)

7.798

GRAVY (calculated)

0.015

Length

325 amino acids

Sequence
(BLAST)

001: MMNKGIPRPS IVFFNSVINS LCKEGRIMDA HDIFDLVIDI GERPDAITFS SLIDGYCLVG NMDKALKVLD VMESVGVEPN VITYNTLVNG YCRNGRIDDS
101: LTLFREMPRK RIKPDTVSYC IIMNGLFRAG RTVAARKMFH EMTENGITVS ISTYSIILRG LCRNNCADEA ITLFQKLGTM NVKFDIAILN TMINAMYKVG
201: RREEAKDLFA AISHSGLVPN ESTYKVMIKN LLKDGAVEDA DNMFSSMDNS GIVPSSLLIN DIIRMLLEKG EIAKAGNYLS KVDGKSISLE ASTASLMLSL
301: FSRKGKHQED IKLLPAKYQF FDGFG

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.