Factsheet for TraesCS1D01G076700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G057700.1	Wheat	cytosol	58.68	60.31
TraesCS1A01G055600.1	Wheat	cytosol	57.78	59.38
TraesCS1D01G067600.1	Wheat	cytosol	60.18	55.07
TraesCS1D01G068700.1	Wheat	cytosol	68.26	51.94
TraesCS1D01G058400.1	Wheat	cytosol	75.45	48.93
TraesCS1D01G033000.1	Wheat	cytosol	56.59	46.78
TraesCS2D01G532200.1	Wheat	cytosol	39.22	44.71
TraesCS1D01G076500.1	Wheat	mitochondrion	79.04	39.76
TraesCS1D01G055300.1	Wheat	cytosol	71.56	38.67
TraesCS1D01G056700.1	Wheat	cytosol	69.46	38.22
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	73.65	36.55
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	71.26	34.15
KXG35774	Sorghum	cytosol, mitochondrion	48.2	34.04
TraesCS1D01G058500.1	Wheat	plastid	52.1	30.53
TraesCS1D01G056200.1	Wheat	mitochondrion	71.56	28.97
TraesCS1D01G068400.1	Wheat	mitochondrion	70.06	28.43
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	55.69	28.22
TraesCS6D01G290900.1	Wheat	mitochondrion	61.38	27.97
TraesCS1D01G068800.1	Wheat	plastid	68.26	27.94
TraesCS1D01G068900.1	Wheat	mitochondrion	67.96	27.92
TraesCS1D01G076900.1	Wheat	plastid	54.79	27.85
TraesCS1D01G068500.1	Wheat	mitochondrion	67.07	27.59
TraesCS1D01G069100.1	Wheat	mitochondrion	52.99	27.53
TraesCS2D01G532500.1	Wheat	plastid	54.19	26.62
TraesCS2D01G532100.1	Wheat	mitochondrion	54.79	26.45
TraesCS2D01G532400.1	Wheat	cytosol	47.31	25.86
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	58.68	25.59
TraesCS1D01G076400.1	Wheat	cytosol	26.65	24.52
CDX68679	Canola	cytosol	8.38	24.35
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	57.19	24.27
Zm00001d007534_P001	Maize	plastid	56.29	24.2
TraesCS2D01G532600.1	Wheat	plastid	55.99	24.1
Zm00001d007559_P001	Maize	plastid	58.38	23.87
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	56.59	23.86
Zm00001d007548_P001	Maize	plastid	58.08	23.83
Zm00001d007555_P001	Maize	plastid	58.08	23.83
TraesCS2D01G532300.1	Wheat	plastid	54.19	23.26
Zm00001d007531_P001	Maize	plastid	56.59	23.22
TraesCS6D01G017800.1	Wheat	cytosol	36.83	22.91
TraesCS6D01G017700.1	Wheat	plastid	36.53	22.85
Os04t0351333-00	Rice	cytosol	58.68	22.3
KXG28799	Sorghum	plastid	48.8	21.45
Solyc06g007810.1.1	Tomato	cytosol	14.97	18.66
TraesCS1D01G058000.1	Wheat	cytosol	21.26	17.49
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	35.63	16.64
PGSC0003DMT400008759	Potato	cytosol	14.97	15.67
Bra006187.1-P	Field mustard	plastid	13.47	15.46
KRH39054	Soybean	cytosol	19.16	12.88
KRH39057	Soybean	cytosol	19.16	12.88
KRH39004	Soybean	cytosol	18.86	12.68
KRH39112	Soybean	cytosol	18.86	12.68
Bra027636.1-P	Field mustard	cytosol	12.28	12.65
TraesCS6D01G047700.1	Wheat	mitochondrion	26.05	12.59
KRH39072	Soybean	cytosol	18.56	12.5
KRH39074	Soybean	cytosol	18.56	12.47
VIT_14s0081g00110.t01	Wine grape	cytosol	18.26	12.42
VIT_14s0030g02260.t01	Wine grape	cytosol	16.47	12.42
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	17.96	11.88
Solyc06g005220.2.1	Tomato	cytosol	14.07	11.58
PGSC0003DMT400052977	Potato	cytosol	13.47	11.57
KRH08636	Soybean	cytosol	17.96	11.49
KRH08671	Soybean	cytosol, mitochondrion	18.86	11.39
KRH25652	Soybean	cytosol, golgi	18.26	11.3
KRH08628	Soybean	plastid	18.26	11.05
KRH48615	Soybean	mitochondrion	17.96	11.01
KRH08639	Soybean	mitochondrion, plastid	18.56	10.97
KRH08625	Soybean	plastid	18.86	10.94
KRH08607	Soybean	cytosol	18.26	10.87
KRH17148	Soybean	mitochondrion	17.66	10.83
KRH39066	Soybean	cytosol	17.96	10.81
KRH08277	Soybean	plastid	17.96	10.58
KRH09082	Soybean	cytosol	12.87	10.54
Bra026884.1-P	Field mustard	cytosol	14.37	10.46
KRH40400	Soybean	plastid	17.96	10.4
VIT_14s0081g00120.t01	Wine grape	plastid	17.96	10.29
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.97	10.18
KRH09154	Soybean	mitochondrion	16.77	10.07
Bra026882.1-P	Field mustard	cytosol	15.87	9.93
PGSC0003DMT400008757	Potato	cytosol	14.67	9.84
VIT_14s0081g00270.t01	Wine grape	plastid	17.07	9.83
Bra031731.1-P	Field mustard	mitochondrion	14.67	9.65
VIT_12s0028g02320.t01	Wine grape	mitochondrion	13.77	9.64
VIT_14s0081g00280.t01	Wine grape	mitochondrion	17.96	9.39
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	14.67	9.33
PGSC0003DMT400025087	Potato	endoplasmic reticulum	13.77	9.29
Bra025516.1-P	Field mustard	cytosol, mitochondrion	13.17	9.22
AT1G63330.2	Thale cress	cytosol	15.27	9.12
KRH08599	Soybean	cytosol, plastid	18.26	9.12
Bra036649.1-P	Field mustard	cytosol	10.48	8.95
Bra027726.1-P	Field mustard	mitochondrion	12.57	8.92
PGSC0003DMT400025074	Potato	cytosol	14.67	8.88
PGSC0003DMT400025067	Potato	cytosol	12.57	8.82
PGSC0003DMT400008760	Potato	mitochondrion	15.27	8.7
AT3G16710.1	Thale cress	mitochondrion	13.17	8.68
KRH09084	Soybean	plastid	13.17	8.61
KRH40513	Soybean	plastid	8.98	8.55
AT5G16640.1	Thale cress	mitochondrion	12.87	8.53
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	12.28	8.52
KRH31646	Soybean	cytosol	13.17	8.49
Bra027658.1-P	Field mustard	cytosol, mitochondrion	13.77	8.47
KRH41817	Soybean	mitochondrion	14.07	8.47
Solyc06g007300.1.1	Tomato	extracellular	14.97	8.45
Bra021192.1-P	Field mustard	plastid	12.57	8.33
PGSC0003DMT400056663	Potato	plastid	14.67	8.33
PGSC0003DMT400056665	Potato	mitochondrion	14.67	8.32
PGSC0003DMT400053185	Potato	mitochondrion	14.67	8.31
Bra027029.1-P	Field mustard	mitochondrion	5.99	8.23
AT1G62930.1	Thale cress	plastid	15.27	8.11
AT1G62670.1	Thale cress	mitochondrion	15.27	8.1
KRH09121	Soybean	mitochondrion	12.87	8.05
AT1G62590.1	Thale cress	mitochondrion	15.27	8.04
AT1G62720.1	Thale cress	mitochondrion	11.68	8.04
AT1G64580.1	Thale cress	mitochondrion	12.57	8.03
VIT_14s0030g02280.t01	Wine grape	plastid	13.47	8.02
AT5G41170.1	Thale cress	mitochondrion	12.57	7.97
Solyc06g007740.1.1	Tomato	cytosol	14.07	7.97
AT1G63130.1	Thale cress	mitochondrion	14.97	7.94
Bra036651.1-P	Field mustard	mitochondrion	12.57	7.85
Solyc04g080120.1.1	Tomato	extracellular	14.37	7.84
AT1G63070.1	Thale cress	mitochondrion	13.77	7.8
Bra026971.1-P	Field mustard	mitochondrion	14.67	7.79
AT3G22470.1	Thale cress	cytosol, mitochondrion	14.37	7.75
PGSC0003DMT400015293	Potato	mitochondrion	14.07	7.7
PGSC0003DMT400015298	Potato	mitochondrion	14.07	7.7
AT1G12300.1	Thale cress	mitochondrion	14.67	7.69
PGSC0003DMT400053182	Potato	cytosol	13.77	7.68
AT1G64583.1	Thale cress	mitochondrion	11.68	7.62
AT1G06580.1	Thale cress	mitochondrion	11.38	7.6
AT1G62910.1	Thale cress	mitochondrion	14.37	7.59
PGSC0003DMT400052971	Potato	mitochondrion	13.47	7.59
AT1G12620.1	Thale cress	cytosol, mitochondrion	14.07	7.57
Bra027656.1-P	Field mustard	cytosol	21.26	7.55
Bra028267.1-P	Field mustard	mitochondrion	14.07	7.51
AT1G62680.2	Thale cress	plastid	12.28	7.48
Bra016762.1-P	Field mustard	mitochondrion	13.47	7.41
TraesCS6D01G083300.1	Wheat	mitochondrion	9.88	7.4
Bra026958.1-P	Field mustard	mitochondrion	14.07	7.38
KRH09097	Soybean	plastid	12.87	7.38
KRH09095	Soybean	plastid	12.87	7.35
AT1G63080.3	Thale cress	mitochondrion	13.47	7.33
AT1G63150.1	Thale cress	mitochondrion	13.77	7.31
TraesCS6D01G083400.1	Wheat	mitochondrion	10.78	7.3
AT1G12700.2	Thale cress	cytosol	13.47	7.28
KRH39050	Soybean	mitochondrion	11.38	7.14
Bra026401.1-P	Field mustard	plastid	11.38	7.1
Bra026954.1-P	Field mustard	mitochondrion	13.77	7.08
Bra026957.1-P	Field mustard	mitochondrion	12.57	6.97
AT1G64100.2	Thale cress	cytosol	16.77	6.95
AT1G63400.1	Thale cress	cytosol, plastid	11.98	6.93
AT1G12775.1	Thale cress	cytosol, mitochondrion	13.17	6.83
KRH39064	Soybean	cytosol	19.76	6.81
Bra027026.1-P	Field mustard	mitochondrion	10.18	6.5
KRH09085	Soybean	mitochondrion	13.47	6.39
AT4G26800.2	Thale cress	mitochondrion, plastid	9.58	6.23
PGSC0003DMT400053556	Potato	mitochondrion	8.38	6.1
KRH12873	Soybean	cytosol	12.57	6.03
TraesCS6D01G083100.1	Wheat	cytosol	8.38	5.71
AT1G62914.1	Thale cress	mitochondrion	8.08	5.11
Bra016758.1-P	Field mustard	plastid	14.07	4.06
Os04t0349600-01	Rice	plastid	2.99	2.58
Solyc06g007280.2.1	Tomato	cytosol	1.8	2.35
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	2.4	2.34
TraesCS1A01G055500.1	Wheat	mitochondrion	1.2	1.84
TraesCS6D01G076500.1	Wheat	plastid	2.4	1.77
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	0.6	0.88
TraesCS1D01G057800.1	Wheat	mitochondrion	0.3	0.28
TraesCS1D01G056600.1	Wheat	mitochondrion	0.0	0.0
TraesCS1D01G068600.1	Wheat	plastid	0.0	0.0
TraesCS7D01G231400.1	Wheat	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1D01G076700.1	EnsemblPlantsGene:TraesCS1D01G076700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:58762022..58763124

Molecular Weight (calculated)

36624.8 Da

IEP (calculated)

6.658

GRAVY (calculated)

0.165

Length

334 amino acids

Sequence
(BLAST)

001: MEQRVSLDVC TYATVIAALC RMGRLADAMD KLNEMIAMGL QPNKVVYHSL IQGFCTHSDL VKAKALVSEM MNKGIPRPNI VFFSSVINSL CKEGRVTDAH
101: DIFDLAINIG ERPDVITFNS LIDGYCLAGK MDKAFGVLDA MVSAGIEHNV VTYNTLVDGY SRNGRIDDGL TLFREMTRNK IKPTTATYGA ILHGLFRAGR
201: TSSAKKMFNE MIESGTTVDI PIYAIILGGL CRNNCVDEAI ILFEKLGAMN VKLDVGIFNT MINAVYTVKG REEAKDLFAA ISANWLVPNA SSYGVMITNL
301: LREGLVEEAD NMFSSMDKSG CAPSSRLLNI IIRM

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.