Factsheet for TraesCS1D01G075800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G057800.1	Wheat	mitochondrion	62.57	58.95
TraesCS1D01G056600.1	Wheat	mitochondrion	33.04	55.94
TraesCS1D01G068600.1	Wheat	plastid	54.97	55.29
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	36.26	54.39
TraesCS7D01G231400.1	Wheat	cytosol, plastid	45.61	38.71
TraesCS1D01G076400.1	Wheat	cytosol	40.35	38.02
Os04t0349600-01	Rice	plastid	42.11	37.21
TraesCS6D01G083100.1	Wheat	cytosol	50.88	35.51
TraesCS6D01G083400.1	Wheat	mitochondrion	50.29	34.89
TraesCS6D01G083300.1	Wheat	mitochondrion	44.15	33.86
TraesCS1D01G058000.1	Wheat	cytosol	39.77	33.5
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	42.4	30.15
TraesCS6D01G290900.1	Wheat	mitochondrion	62.87	29.33
TraesCS6D01G076500.1	Wheat	plastid	37.13	28.04
TraesCS1D01G068900.1	Wheat	mitochondrion	66.37	27.92
TraesCS1D01G068400.1	Wheat	mitochondrion	65.5	27.22
TraesCS1D01G068500.1	Wheat	mitochondrion	64.62	27.22
TraesCS1D01G056200.1	Wheat	mitochondrion	64.62	26.79
TraesCS1D01G068800.1	Wheat	plastid	63.45	26.59
TraesCS1D01G069100.1	Wheat	mitochondrion	48.54	25.82
TraesCS1D01G058500.1	Wheat	plastid	42.98	25.79
TraesCS1D01G076900.1	Wheat	plastid	48.25	25.11
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	56.43	24.37
KXG28799	Sorghum	plastid	54.09	24.34
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	55.56	24.14
Zm00001d007531_P001	Maize	plastid	54.09	22.73
Zm00001d007555_P001	Maize	plastid	54.09	22.73
Zm00001d007548_P001	Maize	plastid	53.8	22.6
Zm00001d007559_P001	Maize	plastid	53.8	22.52
TraesCS2D01G532600.1	Wheat	plastid	50.0	22.04
Zm00001d007534_P001	Maize	plastid	50.0	22.01
Solyc06g007280.2.1	Tomato	cytosol	16.08	21.57
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	48.25	21.54
TraesCS2D01G532300.1	Wheat	plastid	47.37	20.82
TraesCS1D01G076500.1	Wheat	mitochondrion	38.6	19.88
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	40.06	19.66
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	38.01	19.32
TraesCS1D01G055300.1	Wheat	cytosol	32.75	18.12
TraesCS2D01G532400.1	Wheat	cytosol	31.87	17.84
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	37.13	17.76
TraesCS6D01G047700.1	Wheat	mitochondrion	35.38	17.51
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	30.99	16.09
TraesCS2D01G532100.1	Wheat	mitochondrion	32.46	16.04
TraesCS2D01G532500.1	Wheat	plastid	31.58	15.88
TraesCS1D01G056700.1	Wheat	cytosol	27.49	15.49
AT1G62914.1	Thale cress	mitochondrion	23.39	15.15
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.76	14.88
KRH40513	Soybean	plastid	15.2	14.81
Os04t0351333-00	Rice	cytosol	38.01	14.79
TraesCS1D01G058400.1	Wheat	cytosol	22.22	14.76
KRH39054	Soybean	cytosol	21.34	14.69
KRH39057	Soybean	cytosol	21.05	14.49
AT1G63400.1	Thale cress	cytosol, plastid	24.27	14.38
KRH39112	Soybean	cytosol	20.76	14.29
KRH48615	Soybean	mitochondrion	22.51	14.13
KRH39072	Soybean	cytosol	20.47	14.11
KRH39004	Soybean	cytosol	20.47	14.08
KRH39074	Soybean	cytosol	20.47	14.08
AT1G62670.1	Thale cress	mitochondrion	25.15	13.65
AT1G63130.1	Thale cress	mitochondrion	25.15	13.65
AT1G62930.1	Thale cress	plastid	24.85	13.51
AT1G63330.2	Thale cress	cytosol	21.93	13.42
KRH09154	Soybean	mitochondrion	21.64	13.31
KRH09084	Soybean	plastid	19.88	13.31
AT3G22470.1	Thale cress	cytosol, mitochondrion	23.98	13.25
AT1G63070.1	Thale cress	mitochondrion	22.81	13.22
Bra026971.1-P	Field mustard	mitochondrion	24.27	13.2
VIT_14s0030g02280.t01	Wine grape	plastid	21.64	13.19
KRH39050	Soybean	mitochondrion	20.47	13.16
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.88	12.95
AT1G62590.1	Thale cress	mitochondrion	23.98	12.93
AT1G63080.3	Thale cress	mitochondrion	23.1	12.87
AT4G26800.2	Thale cress	mitochondrion, plastid	19.3	12.84
KRH39066	Soybean	cytosol	20.76	12.79
AT1G63150.1	Thale cress	mitochondrion	23.39	12.72
Bra026401.1-P	Field mustard	plastid	19.88	12.71
Bra036651.1-P	Field mustard	mitochondrion	19.88	12.71
AT5G16640.1	Thale cress	mitochondrion	18.71	12.7
KRH17148	Soybean	mitochondrion	20.18	12.66
Bra028267.1-P	Field mustard	mitochondrion	23.1	12.62
KRH41817	Soybean	mitochondrion	20.47	12.61
Solyc06g005220.2.1	Tomato	cytosol	14.91	12.56
AT1G62910.1	Thale cress	mitochondrion	23.1	12.5
PGSC0003DMT400053556	Potato	mitochondrion	16.67	12.42
Bra031731.1-P	Field mustard	mitochondrion	18.42	12.4
KRH09121	Soybean	mitochondrion	19.3	12.36
Bra016762.1-P	Field mustard	mitochondrion	21.93	12.36
KRH08628	Soybean	plastid	19.88	12.32
PGSC0003DMT400025074	Potato	cytosol	19.88	12.32
TraesCS6D01G017800.1	Wheat	cytosol	19.3	12.29
Bra036649.1-P	Field mustard	cytosol	14.04	12.28
Bra026958.1-P	Field mustard	mitochondrion	22.81	12.24
Bra027026.1-P	Field mustard	mitochondrion	18.71	12.24
AT1G06580.1	Thale cress	mitochondrion	17.84	12.2
KRH08277	Soybean	plastid	20.18	12.17
AT1G12700.2	Thale cress	cytosol	21.93	12.14
AT1G12620.1	Thale cress	cytosol, mitochondrion	21.93	12.08
KRH08636	Soybean	cytosol	18.42	12.07
Solyc06g007740.1.1	Tomato	cytosol	20.76	12.03
VIT_14s0081g00120.t01	Wine grape	plastid	20.47	12.01
Bra026954.1-P	Field mustard	mitochondrion	22.81	12.0
Bra026882.1-P	Field mustard	cytosol	18.71	11.98
AT1G12300.1	Thale cress	mitochondrion	22.22	11.93
Bra021192.1-P	Field mustard	plastid	17.54	11.9
VIT_14s0081g00270.t01	Wine grape	plastid	20.18	11.9
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.22	11.89
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	17.54	11.88
PGSC0003DMT400053185	Potato	mitochondrion	20.47	11.86
KRH08639	Soybean	mitochondrion, plastid	19.59	11.86
AT1G64580.1	Thale cress	mitochondrion	18.13	11.85
AT1G12775.1	Thale cress	cytosol, mitochondrion	22.22	11.8
KRH09095	Soybean	plastid	20.18	11.79
KRH40400	Soybean	plastid	19.88	11.79
PGSC0003DMT400008760	Potato	mitochondrion	20.18	11.77
Bra026957.1-P	Field mustard	mitochondrion	20.76	11.77
AT5G41170.1	Thale cress	mitochondrion	18.13	11.76
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.96	11.72
KRH09097	Soybean	plastid	19.88	11.66
Solyc06g007300.1.1	Tomato	extracellular	20.18	11.66
KRH08671	Soybean	cytosol, mitochondrion	18.71	11.57
AT1G62720.1	Thale cress	mitochondrion	16.37	11.55
KRH08625	Soybean	plastid	19.3	11.46
AT3G16710.1	Thale cress	mitochondrion	16.96	11.44
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.13	11.42
KXG35774	Sorghum	cytosol, mitochondrion	15.5	11.21
PGSC0003DMT400052971	Potato	mitochondrion	19.3	11.13
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.5	11.11
PGSC0003DMT400056665	Potato	mitochondrion	19.01	11.04
KRH31646	Soybean	cytosol	16.67	11.0
VIT_14s0081g00110.t01	Wine grape	cytosol	15.79	11.0
AT1G64583.1	Thale cress	mitochondrion	16.37	10.94
PGSC0003DMT400025067	Potato	cytosol	15.2	10.92
PGSC0003DMT400053182	Potato	cytosol	19.01	10.85
PGSC0003DMT400056663	Potato	plastid	18.42	10.71
KRH08607	Soybean	cytosol	17.54	10.7
Bra026884.1-P	Field mustard	cytosol	14.33	10.68
PGSC0003DMT400008757	Potato	cytosol	15.5	10.64
Solyc04g080120.1.1	Tomato	extracellular	19.01	10.62
PGSC0003DMT400015293	Potato	mitochondrion	18.42	10.33
PGSC0003DMT400015298	Potato	mitochondrion	18.42	10.33
AT1G62680.2	Thale cress	plastid	16.37	10.22
KRH25652	Soybean	cytosol, golgi	16.08	10.19
AT1G64100.2	Thale cress	cytosol	23.98	10.17
KRH09085	Soybean	mitochondrion	20.18	9.8
Bra027726.1-P	Field mustard	mitochondrion	13.45	9.77
KRH08599	Soybean	cytosol, plastid	17.84	9.12
KRH12873	Soybean	cytosol	17.84	8.76
PGSC0003DMT400052977	Potato	cytosol	9.94	8.74
Bra027656.1-P	Field mustard	cytosol	23.98	8.71
Bra027636.1-P	Field mustard	cytosol	8.19	8.64
TraesCS6D01G017700.1	Wheat	plastid	13.16	8.43
KRH09082	Soybean	cytosol	9.94	8.33
Bra026836.1-P	Field mustard	cytosol, mitochondrion	11.7	8.15
KRH39064	Soybean	cytosol	22.81	8.05
Bra016758.1-P	Field mustard	plastid	22.81	6.73
Bra027029.1-P	Field mustard	mitochondrion	4.68	6.58
Bra006187.1-P	Field mustard	plastid	4.39	5.15
PGSC0003DMT400008759	Potato	cytosol	2.34	2.51
VIT_14s0030g02260.t01	Wine grape	cytosol	3.22	2.48
TraesCS1D01G076700.1	Wheat	cytosol	2.34	2.4
TraesCS1D01G067600.1	Wheat	cytosol	2.34	2.19
TraesCS1D01G068700.1	Wheat	cytosol	2.34	1.82
TraesCS1D01G057700.1	Wheat	cytosol	1.46	1.54
TraesCS2D01G532200.1	Wheat	cytosol	1.17	1.37
TraesCS1D01G033000.1	Wheat	cytosol	1.46	1.24
CDX68679	Canola	cytosol	0.0	0.0
Solyc06g007810.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1D01G075800.1	EnsemblPlantsGene:TraesCS1D01G075800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1D:+:58444208..58445311

Molecular Weight (calculated)

37364.3 Da

IEP (calculated)

8.993

GRAVY (calculated)

-0.081

Length

342 amino acids

Sequence
(BLAST)

001: MPVMPRFYST TPMPRLLRRL SSTSTSTSGP SRCWDPSAAL AAATERVRAG TLSPADARHL FDELLQRPTP VPGQALNGFL AALARAPASA ACGDSPALAV
101: SLFNRLCREA SPHASPLTVH TYSILMDCCC RARRPDLGLA FFGRLLRTGL RTDGVDAYAL IKCFCLAKRT DEAVSVLLHR SQRALDLLRM MSKEGGVCAP
201: NVVPYSTVIH GFCKEGKVSK ACDLFNKMGQ QGVKPNVVTY TSIIDALCKA RAMDKAESFL RHMVDNDVRP NNVTYKCIIQ GYSSLGLWNE AVKIFREMTS
301: RGLMLDDVTR NSFVASLCNH GRSKEAAEIA HQMIESETTV SN

Best Arabidopsis Sequence Match ( AT1G63150.1 )
(BLAST)

001: MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY REILRNRLSD IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE
101: LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL
201: HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALNLLNKME AARIKANVVI FNTIIDSLCK YRHVEVAVDL FTEMETKGIR PNVVTYNSLI
301: NCLCNYGRWS DASRLLSNML EKKINPNVVT FNALIDAFFK EGKLVEAEKL HEEMIQRSID PDTITYNLLI NGFCMHNRLD EAKQMFKFMV SKDCLPNIQT
401: YNTLINGFCK CKRVEDGVEL FREMSQRGLV GNTVTYTTII QGFFQAGDCD SAQMVFKQMV SNRVPTDIMT YSILLHGLCS YGKLDTALVI FKYLQKSEME
501: LNIFIYNTMI EGMCKAGKVG EAWDLFCSLS IKPDVVTYNT MISGLCSKRL LQEADDLFRK MKEDGTLPNS GTYNTLIRAN LRDCDRAASA ELIKEMRSSG
601: FVGDASTISL VTNMLHDGRL DKSFLNMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g63150 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAM8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.