Factsheet for TraesCS1D01G056700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G072700.1	Wheat	cytosol	62.93	74.9
TraesCS1D01G055300.1	Wheat	cytosol	76.11	74.76
TraesCS1D01G057700.1	Wheat	cytosol	39.21	73.23
TraesCS1D01G058400.1	Wheat	cytosol	62.11	73.2
TraesCS1D01G076700.1	Wheat	cytosol	38.22	69.46
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	76.61	69.09
TraesCS1D01G067600.1	Wheat	cytosol	39.87	66.3
TraesCS1D01G068700.1	Wheat	cytosol	46.62	64.46
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	72.49	63.13
TraesCS1D01G076400.1	Wheat	cytosol	36.57	61.16
TraesCS1D01G076500.1	Wheat	mitochondrion	63.76	58.28
TraesCS1D01G033000.1	Wheat	cytosol	38.06	57.18
TraesCS1D01G056200.1	Wheat	mitochondrion	77.59	57.09
TraesCS1D01G058000.1	Wheat	cytosol	38.06	56.9
TraesCS2D01G532200.1	Wheat	cytosol	26.52	54.95
TraesCS1D01G068800.1	Wheat	plastid	69.19	51.47
TraesCS1D01G068400.1	Wheat	mitochondrion	69.69	51.4
TraesCS1D01G068900.1	Wheat	mitochondrion	68.37	51.05
TraesCS1D01G068500.1	Wheat	mitochondrion	67.05	50.12
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	53.87	49.62
KXG35774	Sorghum	cytosol, mitochondrion	38.22	49.05
TraesCS2D01G532400.1	Wheat	cytosol	48.43	48.12
TraesCS2D01G532500.1	Wheat	plastid	52.55	46.91
TraesCS1D01G058500.1	Wheat	plastid	43.99	46.84
TraesCS6D01G290900.1	Wheat	mitochondrion	55.85	46.25
TraesCS2D01G532100.1	Wheat	mitochondrion	52.72	46.24
TraesCS6D01G017800.1	Wheat	cytosol	40.86	46.18
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	59.8	46.12
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	59.97	45.96
TraesCS6D01G017700.1	Wheat	plastid	37.73	42.88
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	54.04	42.82
TraesCS2D01G532600.1	Wheat	plastid	53.38	41.75
Zm00001d007534_P001	Maize	plastid	53.38	41.7
Zm00001d007548_P001	Maize	plastid	55.19	41.15
Zm00001d007559_P001	Maize	plastid	55.19	41.0
TraesCS2D01G532300.1	Wheat	plastid	52.55	41.0
Zm00001d007555_P001	Maize	plastid	54.7	40.79
Zm00001d007531_P001	Maize	plastid	54.53	40.66
TraesCS1D01G069100.1	Wheat	mitochondrion	43.0	40.59
KXG28799	Sorghum	plastid	50.41	40.26
TraesCS1D01G076900.1	Wheat	plastid	42.83	39.57
Os04t0351333-00	Rice	cytosol	54.53	37.66
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	42.67	36.22
TraesCS6D01G083300.1	Wheat	mitochondrion	26.03	35.43
TraesCS6D01G083100.1	Wheat	cytosol	26.52	32.86
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	25.54	32.22
TraesCS6D01G083400.1	Wheat	mitochondrion	25.54	31.44
Solyc06g007280.2.1	Tomato	cytosol	12.85	30.59
TraesCS7D01G231400.1	Wheat	cytosol, plastid	20.26	30.52
TraesCS6D01G047700.1	Wheat	mitochondrion	33.61	29.52
TraesCS1D01G057800.1	Wheat	mitochondrion	17.63	29.48
PGSC0003DMT400052977	Potato	cytosol	18.78	29.31
Solyc06g005220.2.1	Tomato	cytosol	18.95	28.33
TraesCS1D01G068600.1	Wheat	plastid	15.65	27.94
PGSC0003DMT400008759	Potato	cytosol	14.66	27.9
KRH09082	Soybean	cytosol	18.62	27.7
Solyc06g007810.1.1	Tomato	cytosol	12.19	27.61
VIT_14s0081g00110.t01	Wine grape	cytosol	22.24	27.49
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	15.49	27.49
Bra027636.1-P	Field mustard	cytosol	14.66	27.47
Os04t0349600-01	Rice	plastid	17.3	27.13
Bra026884.1-P	Field mustard	cytosol	20.43	27.02
KRH39004	Soybean	cytosol	22.08	26.96
KRH39054	Soybean	cytosol	21.91	26.76
KRH39057	Soybean	cytosol	21.58	26.36
KRH39074	Soybean	cytosol	21.42	26.16
KRH39072	Soybean	cytosol	21.09	25.81
KRH39112	Soybean	cytosol	21.09	25.75
CDX68679	Canola	cytosol	4.78	25.22
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.92	25.15
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.6	24.95
TraesCS6D01G076500.1	Wheat	plastid	18.62	24.94
Bra027029.1-P	Field mustard	mitochondrion	9.88	24.69
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.93	24.44
PGSC0003DMT400025067	Potato	cytosol	19.11	24.37
KRH08636	Soybean	cytosol	20.92	24.33
KRH39066	Soybean	cytosol	21.91	23.96
KRH40513	Soybean	plastid	13.84	23.93
KRH08607	Soybean	cytosol	22.08	23.89
KRH09084	Soybean	plastid	20.1	23.87
Bra006187.1-P	Field mustard	plastid	11.37	23.71
PGSC0003DMT400008757	Potato	cytosol	19.28	23.49
KRH08639	Soybean	mitochondrion, plastid	21.58	23.19
KRH25652	Soybean	cytosol, golgi	20.59	23.15
KRH09121	Soybean	mitochondrion	20.26	23.03
PGSC0003DMT400025074	Potato	cytosol	20.76	22.83
KRH08671	Soybean	cytosol, mitochondrion	20.76	22.78
KRH08628	Soybean	plastid	20.59	22.64
Bra031731.1-P	Field mustard	mitochondrion	18.95	22.64
KRH17148	Soybean	mitochondrion	20.26	22.57
KRH48615	Soybean	mitochondrion	20.26	22.57
Bra036649.1-P	Field mustard	cytosol	14.5	22.51
KRH08277	Soybean	plastid	20.92	22.4
Solyc06g007740.1.1	Tomato	cytosol	21.75	22.37
KRH41817	Soybean	mitochondrion	20.26	22.16
KRH09154	Soybean	mitochondrion	20.26	22.12
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.11	22.1
KRH40400	Soybean	plastid	20.92	22.01
KRH39050	Soybean	mitochondrion	19.28	21.99
VIT_14s0081g00120.t01	Wine grape	plastid	21.09	21.96
PGSC0003DMT400056665	Potato	mitochondrion	21.25	21.9
PGSC0003DMT400053185	Potato	mitochondrion	21.25	21.86
KRH08625	Soybean	plastid	20.59	21.7
AT1G63330.2	Thale cress	cytosol	19.93	21.65
VIT_14s0081g00270.t01	Wine grape	plastid	20.59	21.55
KRH31646	Soybean	cytosol	18.29	21.43
Solyc06g007300.1.1	Tomato	extracellular	20.76	21.28
Solyc04g080120.1.1	Tomato	extracellular	21.42	21.24
AT5G16640.1	Thale cress	mitochondrion	17.63	21.23
VIT_14s0030g02260.t01	Wine grape	cytosol	15.49	21.22
PGSC0003DMT400052971	Potato	mitochondrion	20.59	21.08
KRH09097	Soybean	plastid	20.1	20.93
PGSC0003DMT400008760	Potato	mitochondrion	20.1	20.82
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.62	20.81
AT1G62670.1	Thale cress	mitochondrion	21.58	20.79
Bra026882.1-P	Field mustard	cytosol	18.29	20.79
KRH09095	Soybean	plastid	19.93	20.68
PGSC0003DMT400015293	Potato	mitochondrion	20.76	20.66
PGSC0003DMT400015298	Potato	mitochondrion	20.76	20.66
PGSC0003DMT400056663	Potato	plastid	19.93	20.58
PGSC0003DMT400053182	Potato	cytosol	20.26	20.53
AT1G63080.3	Thale cress	mitochondrion	20.43	20.2
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.25	20.19
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.31	20.16
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.82	20.13
Bra026958.1-P	Field mustard	mitochondrion	21.09	20.09
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.43	20.03
Bra026971.1-P	Field mustard	mitochondrion	20.76	20.03
AT1G12300.1	Thale cress	mitochondrion	20.76	19.78
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.1	19.65
VIT_14s0030g02280.t01	Wine grape	plastid	18.12	19.61
Bra016762.1-P	Field mustard	mitochondrion	19.6	19.6
AT1G62930.1	Thale cress	plastid	20.26	19.55
KRH08599	Soybean	cytosol, plastid	21.42	19.43
AT1G63130.1	Thale cress	mitochondrion	20.1	19.37
AT3G16710.1	Thale cress	mitochondrion	16.14	19.33
Bra026954.1-P	Field mustard	mitochondrion	20.59	19.23
AT1G63070.1	Thale cress	mitochondrion	18.62	19.15
AT1G64583.1	Thale cress	mitochondrion	16.14	19.14
AT1G62590.1	Thale cress	mitochondrion	19.93	19.09
AT1G62910.1	Thale cress	mitochondrion	19.77	18.99
PGSC0003DMT400053556	Potato	mitochondrion	14.33	18.95
Bra026957.1-P	Field mustard	mitochondrion	18.78	18.91
Bra021192.1-P	Field mustard	plastid	15.65	18.85
AT1G12700.2	Thale cress	cytosol	19.11	18.77
AT1G63400.1	Thale cress	cytosol, plastid	17.79	18.72
Bra036651.1-P	Field mustard	mitochondrion	16.47	18.69
Bra028267.1-P	Field mustard	mitochondrion	19.28	18.69
AT1G62720.1	Thale cress	mitochondrion	14.83	18.56
AT1G64580.1	Thale cress	mitochondrion	15.98	18.55
AT1G63150.1	Thale cress	mitochondrion	19.11	18.44
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.28	18.17
AT1G62680.2	Thale cress	plastid	16.31	18.07
AT5G41170.1	Thale cress	mitochondrion	15.49	17.84
AT1G06580.1	Thale cress	mitochondrion	14.66	17.8
KRH09085	Soybean	mitochondrion	20.43	17.61
AT1G62914.1	Thale cress	mitochondrion	15.16	17.42
AT1G64100.2	Thale cress	cytosol	23.06	17.37
Bra027026.1-P	Field mustard	mitochondrion	14.66	17.02
KRH12873	Soybean	cytosol	19.11	16.67
Bra026401.1-P	Field mustard	plastid	14.66	16.64
AT4G26800.2	Thale cress	mitochondrion, plastid	13.51	15.95
Bra027656.1-P	Field mustard	cytosol	24.22	15.62
Bra027726.1-P	Field mustard	mitochondrion	12.03	15.5
KRH39064	Soybean	cytosol	22.57	14.14
Bra016758.1-P	Field mustard	plastid	19.6	10.27
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	0.82	2.19
TraesCS1D01G056600.1	Wheat	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1D01G056700.1	EnsemblPlantsGene:TraesCS1D01G056700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:37446599..37448422

Molecular Weight (calculated)

67358.0 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.030

Length

607 amino acids

Sequence
(BLAST)

001: MAKDRGGCFP DVVAYNTVIH GFFKEGETGK ACNLFHEMIH QGVEPDVVTY NSVVDALCKA RAMDKAELVL RQMVADGAQP NAVTYNCMIN GYATSGRLKE
101: AAKMFREMKS RGLIPDIFTC NSLMTYLCKH GRSKEAAEFF YSMTAKGHKP DIVSYCILLH GYATEGCFPD MIDVFNSMEN NGIAADFHVF NILIDAYAKR
201: GMMDEAMLIS SKMQERRVNP DIVTYSSIIA GLSRLGRLTE AMEKFNQMIA LGVQPNKVVY HALIQGFCID GDLAKAKQLV SEMMNRGIPR PNISFFSSLI
301: KSLCQEGRVM DAHDIFDLVI DMGERPDDIL FNSLIDGYCL VRKMDKALKV LDVMESVGVE PDVITYNTLV NGYCRNGRIG DGLTLFREMP RKRIKPDTNS
401: YCVIMDGLFR SGRTVSGREM FHEMIESGTT VSISTYNVIL GGLCGNNCAD EAIALFQKLG SMNVKFSIAI VNTMIDAMYR VGRREEAKEL FAGISASGLV
501: PNESTYGVMI MNLLKDGAVE DANNVFSSMD KSGIVPSSRL LNDIIRMLLE KGEIAKAGNY LSKVDGKSIS LEASTTSLML SLFSREGKYR EDMKLLPAKY
601: QFFDGFC

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.