Factsheet for TraesCS1D01G076900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G092600.1	Wheat	plastid	68.34	86.85
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	22.53	64.91
TraesCS1D01G056600.1	Wheat	mitochondrion	19.94	64.85
TraesCS1D01G076500.1	Wheat	mitochondrion	55.4	54.82
TraesCS1D01G076700.1	Wheat	cytosol	27.85	54.79
TraesCS1D01G069100.1	Wheat	mitochondrion	51.9	53.03
TraesCS1D01G058000.1	Wheat	cytosol	32.72	52.96
TraesCS1D01G058500.1	Wheat	plastid	44.9	51.75
TraesCS1D01G068900.1	Wheat	mitochondrion	61.95	50.06
TraesCS1D01G057800.1	Wheat	mitochondrion	27.55	49.86
TraesCS1D01G056200.1	Wheat	mitochondrion	62.25	49.58
TraesCS1D01G068400.1	Wheat	mitochondrion	61.8	49.33
TraesCS1D01G068500.1	Wheat	mitochondrion	60.88	49.26
TraesCS6D01G290900.1	Wheat	mitochondrion	54.64	48.98
TraesCS1D01G068800.1	Wheat	plastid	60.43	48.65
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	25.11	48.25
TraesCS1D01G068600.1	Wheat	plastid	24.96	48.24
TraesCS1D01G058400.1	Wheat	cytosol	36.53	46.6
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	48.55	45.77
TraesCS1D01G055300.1	Wheat	cytosol	42.92	45.63
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	46.12	45.02
TraesCS1D01G068700.1	Wheat	cytosol	29.98	44.87
TraesCS6D01G083400.1	Wheat	mitochondrion	33.03	44.02
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	32.12	43.87
TraesCS7D01G231400.1	Wheat	cytosol, plastid	26.64	43.42
TraesCS1D01G056700.1	Wheat	cytosol	39.57	42.83
TraesCS6D01G083300.1	Wheat	mitochondrion	28.77	42.38
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	50.68	42.31
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	50.53	41.92
Zm00001d007548_P001	Maize	plastid	50.68	40.91
Zm00001d007559_P001	Maize	plastid	50.84	40.88
Zm00001d007555_P001	Maize	plastid	50.53	40.79
TraesCS2D01G532600.1	Wheat	plastid	48.1	40.72
TraesCS6D01G083100.1	Wheat	cytosol	30.29	40.61
KXG28799	Sorghum	plastid	46.88	40.53
Zm00001d007531_P001	Maize	plastid	50.08	40.42
TraesCS2D01G532400.1	Wheat	cytosol	37.29	40.1
TraesCS1D01G057700.1	Wheat	cytosol	19.63	39.69
Zm00001d007534_P001	Maize	plastid	46.88	39.64
TraesCS2D01G532300.1	Wheat	plastid	46.88	39.59
TraesCS1D01G067600.1	Wheat	cytosol	21.0	37.81
TraesCS2D01G532500.1	Wheat	plastid	38.97	37.65
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	43.68	37.47
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	37.44	37.33
TraesCS1D01G033000.1	Wheat	cytosol	22.68	36.88
TraesCS2D01G532100.1	Wheat	mitochondrion	38.36	36.42
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	38.36	35.24
TraesCS6D01G017800.1	Wheat	cytosol	27.7	33.89
TraesCS6D01G076500.1	Wheat	plastid	23.29	33.77
TraesCS6D01G047700.1	Wheat	mitochondrion	34.4	32.71
TraesCS1D01G076400.1	Wheat	cytosol	17.81	32.23
TraesCS6D01G017700.1	Wheat	plastid	26.03	32.02
Os04t0349600-01	Rice	plastid	18.72	31.78
KXG35774	Sorghum	cytosol, mitochondrion	22.83	31.71
Os04t0351333-00	Rice	cytosol	40.94	30.6
TraesCS2D01G532200.1	Wheat	cytosol	12.02	26.96
KRH40513	Soybean	plastid	13.55	25.36
Bra006187.1-P	Field mustard	plastid	10.96	24.74
KRH39004	Soybean	cytosol	18.11	23.94
KRH39054	Soybean	cytosol	17.81	23.54
KRH39074	Soybean	cytosol	17.81	23.54
KRH39112	Soybean	cytosol	17.66	23.34
VIT_12s0028g02320.t01	Wine grape	mitochondrion	16.74	23.06
KRH08636	Soybean	cytosol	18.11	22.8
KRH39072	Soybean	cytosol	17.2	22.78
Solyc06g007810.1.1	Tomato	cytosol	9.28	22.76
Solyc06g007280.2.1	Tomato	cytosol	8.83	22.75
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.96	22.48
Bra036649.1-P	Field mustard	cytosol	13.24	22.25
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	17.05	22.18
KRH39057	Soybean	cytosol	16.74	22.13
Bra021192.1-P	Field mustard	plastid	16.89	22.02
KRH08671	Soybean	cytosol, mitochondrion	18.26	21.7
KRH17148	Soybean	mitochondrion	17.96	21.65
AT1G62720.1	Thale cress	mitochondrion	15.98	21.65
Bra027636.1-P	Field mustard	cytosol	10.65	21.6
KRH39066	Soybean	cytosol	18.11	21.44
AT5G16640.1	Thale cress	mitochondrion	16.44	21.43
AT1G06580.1	Thale cress	mitochondrion	16.29	21.4
KRH08628	Soybean	plastid	17.96	21.38
Bra026882.1-P	Field mustard	cytosol	17.35	21.35
AT1G63330.2	Thale cress	cytosol	18.11	21.29
VIT_14s0081g00110.t01	Wine grape	cytosol	15.83	21.18
Bra036651.1-P	Field mustard	mitochondrion	17.2	21.12
AT3G16710.1	Thale cress	mitochondrion	16.29	21.1
VIT_14s0081g00120.t01	Wine grape	plastid	18.72	21.1
PGSC0003DMT400008757	Potato	cytosol	15.98	21.08
KRH39050	Soybean	mitochondrion	17.05	21.05
KRH09154	Soybean	mitochondrion	17.81	21.04
KRH08607	Soybean	cytosol	17.96	21.03
PGSC0003DMT400008759	Potato	cytosol	10.2	21.0
AT1G62670.1	Thale cress	mitochondrion	20.09	20.95
KRH48615	Soybean	mitochondrion	17.35	20.92
KRH08625	Soybean	plastid	18.26	20.83
KRH08277	Soybean	plastid	17.96	20.81
AT1G63400.1	Thale cress	cytosol, plastid	18.11	20.62
KRH08639	Soybean	mitochondrion, plastid	17.66	20.53
PGSC0003DMT400053556	Potato	mitochondrion	14.31	20.48
Solyc06g005220.2.1	Tomato	cytosol	12.63	20.44
KRH09084	Soybean	plastid	15.83	20.35
AT1G62930.1	Thale cress	plastid	19.48	20.35
VIT_14s0081g00270.t01	Wine grape	plastid	17.96	20.34
Bra025516.1-P	Field mustard	cytosol, mitochondrion	14.76	20.34
VIT_14s0030g02280.t01	Wine grape	plastid	17.35	20.32
KRH40400	Soybean	plastid	17.81	20.28
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.07	20.16
AT1G63130.1	Thale cress	mitochondrion	19.18	20.0
AT1G12620.1	Thale cress	cytosol, mitochondrion	18.87	19.97
Bra028267.1-P	Field mustard	mitochondrion	18.87	19.81
AT1G62590.1	Thale cress	mitochondrion	19.03	19.72
Bra026971.1-P	Field mustard	mitochondrion	18.87	19.71
AT1G62914.1	Thale cress	mitochondrion	15.83	19.7
PGSC0003DMT400053185	Potato	mitochondrion	17.66	19.66
Solyc06g007740.1.1	Tomato	cytosol	17.66	19.66
KRH41817	Soybean	mitochondrion	16.59	19.64
AT1G12300.1	Thale cress	mitochondrion	19.03	19.62
Bra026958.1-P	Field mustard	mitochondrion	19.03	19.62
AT3G22470.1	Thale cress	cytosol, mitochondrion	18.42	19.55
AT1G62910.1	Thale cress	mitochondrion	18.72	19.46
KRH25652	Soybean	cytosol, golgi	15.98	19.44
PGSC0003DMT400025074	Potato	cytosol	16.29	19.38
Bra027029.1-P	Field mustard	mitochondrion	7.15	19.34
AT1G64583.1	Thale cress	mitochondrion	15.07	19.34
KRH31646	Soybean	cytosol	15.22	19.3
VIT_14s0081g00280.t01	Wine grape	mitochondrion	18.72	19.25
AT1G63150.1	Thale cress	mitochondrion	18.42	19.24
AT1G64580.1	Thale cress	mitochondrion	15.22	19.12
KRH09121	Soybean	mitochondrion	15.53	19.1
AT1G63070.1	Thale cress	mitochondrion	17.05	18.98
AT1G62680.2	Thale cress	plastid	15.83	18.98
Bra027026.1-P	Field mustard	mitochondrion	15.07	18.93
Bra027726.1-P	Field mustard	mitochondrion	13.55	18.9
Bra026401.1-P	Field mustard	plastid	15.37	18.88
PGSC0003DMT400025087	Potato	endoplasmic reticulum	14.16	18.79
AT1G63080.3	Thale cress	mitochondrion	17.5	18.73
PGSC0003DMT400025067	Potato	cytosol	13.55	18.7
AT5G41170.1	Thale cress	mitochondrion	14.92	18.6
Solyc06g007300.1.1	Tomato	extracellular	16.74	18.58
PGSC0003DMT400056665	Potato	mitochondrion	16.44	18.34
PGSC0003DMT400008760	Potato	mitochondrion	16.29	18.26
PGSC0003DMT400052977	Potato	cytosol	10.81	18.25
Bra027658.1-P	Field mustard	cytosol, mitochondrion	15.07	18.23
PGSC0003DMT400053182	Potato	cytosol	16.59	18.2
AT1G12775.1	Thale cress	cytosol, mitochondrion	17.81	18.17
PGSC0003DMT400056663	Potato	plastid	16.13	18.03
Bra026884.1-P	Field mustard	cytosol	12.48	17.86
Bra026954.1-P	Field mustard	mitochondrion	17.66	17.85
AT1G12700.2	Thale cress	cytosol	16.74	17.8
Bra016762.1-P	Field mustard	mitochondrion	16.44	17.79
PGSC0003DMT400052971	Potato	mitochondrion	15.83	17.54
AT4G26800.2	Thale cress	mitochondrion, plastid	13.7	17.51
KRH09095	Soybean	plastid	15.53	17.44
KRH08599	Soybean	cytosol, plastid	17.66	17.34
PGSC0003DMT400015293	Potato	mitochondrion	15.98	17.21
PGSC0003DMT400015298	Potato	mitochondrion	15.98	17.21
Solyc04g080120.1.1	Tomato	extracellular	15.83	16.99
Bra031731.1-P	Field mustard	mitochondrion	13.09	16.93
Bra026957.1-P	Field mustard	mitochondrion	15.53	16.92
KRH09097	Soybean	plastid	14.92	16.81
KRH09082	Soybean	cytosol	10.05	16.18
VIT_14s0030g02260.t01	Wine grape	cytosol	10.65	15.8
AT1G64100.2	Thale cress	cytosol	19.18	15.63
KRH09085	Soybean	mitochondrion	15.98	14.91
KRH12873	Soybean	cytosol	15.53	14.66
Bra027656.1-P	Field mustard	cytosol	20.24	14.13
KRH39064	Soybean	cytosol	19.03	12.9
CDX68679	Canola	cytosol	2.13	12.17
Bra016758.1-P	Field mustard	plastid	16.59	9.4

Protein Annotations

EnsemblPlants:TraesCS1D01G076900.1	EnsemblPlantsGene:TraesCS1D01G076900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:58866880..58870020

Molecular Weight (calculated)

72855.3 Da

IEP (calculated)

8.294

GRAVY (calculated)

-0.119

Length

657 amino acids

Sequence
(BLAST)

001: MRPCRTPLLD STSPLSVLLL DHLHRNRPSP PPSASPPSAI WSPIAAFAAA TKRARAGTLS PEDAHHLFDE LLRQSIPVPN RFLNGFLAAL ARAPVSEACG
101: DGPALTVALF NRLCREEAGP CVEPPTYYTY SILMDSCCRV GRPDLGLAFF GRLLKSGLKA DQITASSLLM CLCDAGRTNE AVDVLLHRIS ELGCEPNVIP
201: YNIVLKSLCD SSRSQRALDL LQMMAQRACC SPNVVSYNTV IQGLFKEGQV GARDKAKLVL RHMVGNSVRP DMYTWNSFMG SLRKQGRSKE ATQLFDYMAA
301: KGHKPDVVMY STLLHGYATE GCFTDMINRF NSMEGNGIVA NSRVFNILID AYAKRGMMHE AMLIFTEMRE QRVSPDTFTY GIIIAALCRM GRLSDAMEKL
401: NEMVATGLQP DEAVYYSLIQ GFCTHDDLVK AKELVSEMMT KGIPRPNIVF FNSVIARLCK EGRVKDAHGI FDLAMNIGER PNVITFNSLI HGYSLVGKMA
501: KAFGVLDDME SVGIEPDVVT YTTLRHGYSR NRRTASAKKM FHEMIGSGTM EKKEANNLVA AISANGLVPN ASTYGVIIRH VLKEGLVDEA DNMFSSMDNT
601: SSCAPSSHLL NDISLFYRKK DEQKRFSSYL LYDWMHLKGN SGRRPAQFLP MFEYSFN

Best Arabidopsis Sequence Match ( AT1G09900.1 )
(BLAST)

001: MDLMVSTSSA QEGFCLIQQF HREYKRGNKL DVSCRTSGSI SSKIPLGSRK RNRLVLVSAA SKVESSGLNG RAQKFETLSS GYSNSNGNGH YSSVNSSFAL
101: EDVESNNHLR QMVRTGELEE GFKFLENMVY HGNVPDIIPC TTLIRGFCRL GKTRKAAKIL EILEGSGAVP DVITYNVMIS GYCKAGEINN ALSVLDRMSV
201: SPDVVTYNTI LRSLCDSGKL KQAMEVLDRM LQRDCYPDVI TYTILIEATC RDSGVGHAMK LLDEMRDRGC TPDVVTYNVL VNGICKEGRL DEAIKFLNDM
301: PSSGCQPNVI THNIILRSMC STGRWMDAEK LLADMLRKGF SPSVVTFNIL INFLCRKGLL GRAIDILEKM PQHGCQPNSL SYNPLLHGFC KEKKMDRAIE
401: YLERMVSRGC YPDIVTYNTM LTALCKDGKV EDAVEILNQL SSKGCSPVLI TYNTVIDGLA KAGKTGKAIK LLDEMRAKDL KPDTITYSSL VGGLSREGKV
501: DEAIKFFHEF ERMGIRPNAV TFNSIMLGLC KSRQTDRAID FLVFMINRGC KPNETSYTIL IEGLAYEGMA KEALELLNEL CNKGLMKKSS AEQVAGKM

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09900 [Source:UniProtKB/Swiss-Prot;Acc:Q3EDF8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.