Factsheet for TraesCS2D01G532600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	79.25	93.32
TraesCS2D01G532400.1	Wheat	cytosol	73.2	92.96
TraesCS2D01G532500.1	Wheat	plastid	78.99	90.15
TraesCS2D01G532200.1	Wheat	cytosol	33.76	89.42
TraesCS2D01G532100.1	Wheat	mitochondrion	78.48	88.01
TraesCS2D01G532300.1	Wheat	plastid	86.98	86.76
TraesCS2A01G530600.1	Wheat	cytosol	85.44	86.67
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	45.75	80.87
TraesCS1D01G058400.1	Wheat	cytosol	38.14	57.48
TraesCS1D01G058500.1	Wheat	plastid	41.49	56.49
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	56.83	56.04
TraesCS1D01G076700.1	Wheat	cytosol	24.1	55.99
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	56.83	55.68
TraesCS1D01G057700.1	Wheat	cytosol	23.2	55.38
TraesCS1D01G056200.1	Wheat	mitochondrion	58.76	55.27
TraesCS1D01G068700.1	Wheat	cytosol	31.19	55.13
TraesCS1D01G068600.1	Wheat	plastid	23.97	54.71
TraesCS1D01G068500.1	Wheat	mitochondrion	56.44	53.94
TraesCS1D01G068900.1	Wheat	mitochondrion	56.31	53.75
TraesCS1D01G033000.1	Wheat	cytosol	27.96	53.71
TraesCS1D01G055300.1	Wheat	cytosol	42.65	53.56
TraesCS1D01G068400.1	Wheat	mitochondrion	56.7	53.46
TraesCS1D01G056700.1	Wheat	cytosol	41.75	53.38
TraesCS1D01G068800.1	Wheat	plastid	56.06	53.31
TraesCS1D01G076500.1	Wheat	mitochondrion	45.49	53.16
TraesCS1D01G056600.1	Wheat	mitochondrion	13.79	52.97
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	47.55	52.94
TraesCS1D01G058000.1	Wheat	cytosol	27.32	52.22
TraesCS6D01G290900.1	Wheat	mitochondrion	48.84	51.71
TraesCS1D01G067600.1	Wheat	cytosol	23.97	50.96
TraesCS1D01G069100.1	Wheat	mitochondrion	42.14	50.86
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	44.07	50.82
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	22.04	50.0
TraesCS1D01G057800.1	Wheat	mitochondrion	23.32	49.86
TraesCS6D01G083400.1	Wheat	mitochondrion	30.93	48.68
TraesCS6D01G083300.1	Wheat	mitochondrion	27.84	48.43
TraesCS1D01G076900.1	Wheat	plastid	40.72	48.1
TraesCS6D01G017800.1	Wheat	cytosol	33.12	47.86
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	14.05	47.81
TraesCS6D01G017700.1	Wheat	plastid	32.6	47.38
TraesCS6D01G083100.1	Wheat	cytosol	29.9	47.35
TraesCS7D01G231400.1	Wheat	cytosol, plastid	24.48	47.15
TraesCS1D01G076400.1	Wheat	cytosol	21.78	46.56
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	42.4	46.01
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	28.22	45.53
TraesCS6D01G076500.1	Wheat	plastid	22.68	38.85
TraesCS6D01G047700.1	Wheat	mitochondrion	34.54	38.78
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.2	31.24
KRH39054	Soybean	cytosol	19.85	30.99
KRH40513	Soybean	plastid	13.92	30.77
VIT_14s0081g00110.t01	Wine grape	cytosol	19.46	30.75
Solyc06g007280.2.1	Tomato	cytosol	10.05	30.59
KRH39074	Soybean	cytosol	19.59	30.58
KRH39112	Soybean	cytosol	19.59	30.58
KRH09084	Soybean	plastid	19.72	29.94
KRH39004	Soybean	cytosol	19.07	29.78
KRH39057	Soybean	cytosol	18.94	29.58
KRH17148	Soybean	mitochondrion	20.62	29.36
KRH08636	Soybean	cytosol	19.72	29.31
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.94	29.11
PGSC0003DMT400052977	Potato	cytosol	14.56	29.05
AT5G16640.1	Thale cress	mitochondrion	18.81	28.97
KRH39072	Soybean	cytosol	18.43	28.83
VIT_14s0081g00270.t01	Wine grape	plastid	21.39	28.62
KRH39066	Soybean	cytosol	20.36	28.47
Bra036649.1-P	Field mustard	cytosol	14.3	28.39
KRH08607	Soybean	cytosol	20.49	28.34
VIT_14s0081g00120.t01	Wine grape	plastid	21.26	28.3
KRH39050	Soybean	mitochondrion	19.33	28.2
KRH08628	Soybean	plastid	19.97	28.08
KRH08277	Soybean	plastid	20.49	28.04
KRH31646	Soybean	cytosol	18.69	27.99
KRH09154	Soybean	mitochondrion	19.72	27.52
Bra006187.1-P	Field mustard	plastid	10.31	27.49
KRH08671	Soybean	cytosol, mitochondrion	19.59	27.49
KRH09121	Soybean	mitochondrion	18.81	27.34
Solyc06g005220.2.1	Tomato	cytosol	14.3	27.34
KRH48615	Soybean	mitochondrion	19.2	27.34
KRH08639	Soybean	mitochondrion, plastid	19.85	27.26
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.43	27.24
Bra027636.1-P	Field mustard	cytosol	11.34	27.16
KRH08625	Soybean	plastid	20.1	27.08
KRH40400	Soybean	plastid	20.1	27.04
KRH09082	Soybean	cytosol	14.18	26.96
CDX68679	Canola	cytosol	3.99	26.96
Solyc06g007810.1.1	Tomato	cytosol	9.28	26.87
AT3G16710.1	Thale cress	mitochondrion	17.4	26.63
AT1G63400.1	Thale cress	cytosol, plastid	19.72	26.52
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.24	26.42
Bra026882.1-P	Field mustard	cytosol	18.17	26.4
KRH41817	Soybean	mitochondrion	18.81	26.31
KRH25652	Soybean	cytosol, golgi	18.17	26.11
AT1G62930.1	Thale cress	plastid	21.13	26.07
AT1G62670.1	Thale cress	mitochondrion	21.13	26.03
Bra036651.1-P	Field mustard	mitochondrion	17.91	25.98
AT1G63330.2	Thale cress	cytosol	18.69	25.94
AT1G64580.1	Thale cress	mitochondrion	17.4	25.81
AT1G06580.1	Thale cress	mitochondrion	16.62	25.8
AT1G64583.1	Thale cress	mitochondrion	17.01	25.78
AT1G63070.1	Thale cress	mitochondrion	19.59	25.76
AT1G63130.1	Thale cress	mitochondrion	20.88	25.71
VIT_14s0030g02280.t01	Wine grape	plastid	18.56	25.67
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.13	25.67
AT1G63080.3	Thale cress	mitochondrion	20.23	25.57
Bra026884.1-P	Field mustard	cytosol	15.08	25.49
KRH09095	Soybean	plastid	19.2	25.47
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.36	25.44
AT1G62680.2	Thale cress	plastid	17.91	25.36
AT1G12300.1	Thale cress	mitochondrion	20.75	25.27
Solyc06g007740.1.1	Tomato	cytosol	19.2	25.25
AT1G62910.1	Thale cress	mitochondrion	20.49	25.16
AT1G62720.1	Thale cress	mitochondrion	15.72	25.15
Bra027029.1-P	Field mustard	mitochondrion	7.86	25.1
PGSC0003DMT400008759	Potato	cytosol	10.31	25.08
KRH09097	Soybean	plastid	18.81	25.04
Bra021192.1-P	Field mustard	plastid	16.24	25.0
Solyc06g007300.1.1	Tomato	extracellular	19.07	25.0
AT1G63150.1	Thale cress	mitochondrion	20.23	24.96
PGSC0003DMT400008757	Potato	cytosol	15.98	24.9
PGSC0003DMT400053185	Potato	mitochondrion	18.81	24.75
PGSC0003DMT400025074	Potato	cytosol	17.53	24.64
Solyc04g080120.1.1	Tomato	extracellular	19.33	24.51
Bra026971.1-P	Field mustard	mitochondrion	19.85	24.48
Bra027026.1-P	Field mustard	mitochondrion	16.49	24.47
AT1G62914.1	Thale cress	mitochondrion	16.62	24.43
AT5G41170.1	Thale cress	mitochondrion	16.49	24.29
PGSC0003DMT400015293	Potato	mitochondrion	19.07	24.26
PGSC0003DMT400015298	Potato	mitochondrion	19.07	24.26
PGSC0003DMT400025067	Potato	cytosol	14.82	24.16
AT1G62590.1	Thale cress	mitochondrion	19.72	24.13
Bra028267.1-P	Field mustard	mitochondrion	19.46	24.12
PGSC0003DMT400052971	Potato	mitochondrion	18.43	24.11
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.2	24.07
Bra031731.1-P	Field mustard	mitochondrion	15.72	24.02
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.75	23.94
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.72	23.76
Bra026958.1-P	Field mustard	mitochondrion	19.46	23.7
PGSC0003DMT400025087	Potato	endoplasmic reticulum	15.08	23.64
Bra026954.1-P	Field mustard	mitochondrion	19.33	23.08
Bra026401.1-P	Field mustard	plastid	15.72	22.8
Bra016762.1-P	Field mustard	mitochondrion	17.78	22.73
Bra027726.1-P	Field mustard	mitochondrion	13.79	22.72
PGSC0003DMT400056665	Potato	mitochondrion	17.14	22.58
AT4G26800.2	Thale cress	mitochondrion, plastid	14.95	22.57
PGSC0003DMT400053182	Potato	cytosol	17.27	22.37
KRH08599	Soybean	cytosol, plastid	19.07	22.12
PGSC0003DMT400056663	Potato	plastid	16.75	22.11
PGSC0003DMT400008760	Potato	mitochondrion	16.62	22.01
AT1G12700.2	Thale cress	cytosol	17.53	22.01
PGSC0003DMT400053556	Potato	mitochondrion	13.02	22.0
Bra026836.1-P	Field mustard	cytosol, mitochondrion	13.66	21.59
Bra026957.1-P	Field mustard	mitochondrion	16.75	21.56
VIT_14s0030g02260.t01	Wine grape	cytosol	12.11	21.22
KRH09085	Soybean	mitochondrion	18.94	20.88
AT1G64100.2	Thale cress	cytosol	21.52	20.72
KRH12873	Soybean	cytosol	16.49	18.39
Bra027656.1-P	Field mustard	cytosol	21.91	18.07
KRH39064	Soybean	cytosol	20.75	16.62
Bra016758.1-P	Field mustard	plastid	18.17	12.17

Protein Annotations

EnsemblPlants:TraesCS2D01G532600.1	EnsemblPlantsGene:TraesCS2D01G532600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:617887280..617889610

Molecular Weight (calculated)

85095.6 Da

IEP (calculated)

8.500

GRAVY (calculated)

0.170

Length

776 amino acids

Sequence
(BLAST)

001: MPTGRLSSIF TSNATSSFRA PSPQPRAPLA ALAAATERVR AGTLSRQDAH HLFDELLSQA ATVPVRTLNN FLAALARAPP SAACGDGPAL AIALFNRMSQ
101: GAGARVVSPT LCTYSILMDC CCRAGRPDLV VAFFGRLIRL GLRLNVIPFN NLLKGLCKAK RSNEALDLLL HRMPELDCAP DVFSYSIVIN GCFKEGEVDK
201: ACNLFHGMIQ LGVQPNVVIY TSIIDALSKC GAMDKAEVVF RQMVDKGIGP DVMTCTSLIH GYSISGRWKA AVRVFKEMIS LGVVPDTVMW NSFVDSLCKH
301: RRTKEARVIF DSMAAKGQKP DTVSYSIMLN GYVKEGCFDD MTGLFNSMLQ NGVVPNHHIF NILINAYAKR GLMDEAMHMF EVMRQQGVNP DVVDYLVVMD
401: SLCKMGRMDA ALDKFNQMVN QGVSPNKAVY QCLVLGFCSH GDFVKAKELI SETINRGLCS NNVFFYPVIN DLCKEGKVKE AQDMFDFIVG IGQRPDVIMY
501: NSLMDGYCLV GKVEEALRVL DAMKSAGLQP DAITYAILLN GYCKIGRIAD GLSLFREMSL SGVKPTTIMY SIILDGLFRS GRTVSAKEKF NTMVESGLPV
601: DVRTYNIVLH GLCRNNCTGE AIELFKKLCA TNVKINVITF NTMISAMFKT RRIGEAKDLF ATISAIGLVP SVVTYSVMTT NFIKEGLLAE ADDMFLAMEK
701: AGCAPNSRLL NHVVRVLLEN GAVVKAATYL AKLDAKQLSL EASTVSLIVS LFSRKGKLRE HVKLLPVKYQ PPEMLD

Best Arabidopsis Sequence Match ( AT3G22470.1 )
(BLAST)

001: MIQRLIPLNR KASNFTQILE KGTSLLHYSS ITEAKLSYKE RLRNGIVDIK VNDAIDLFES MIQSRPLPTP IDFNRLCSAV ARTKQYDLVL GFCKGMELNG
101: IEHDMYTMTI MINCYCRKKK LLFAFSVLGR AWKLGYEPDT ITFSTLVNGF CLEGRVSEAV ALVDRMVEMK QRPDLVTVST LINGLCLKGR VSEALVLIDR
201: MVEYGFQPDE VTYGPVLNRL CKSGNSALAL DLFRKMEERN IKASVVQYSI VIDSLCKDGS FDDALSLFNE MEMKGIKADV VTYSSLIGGL CNDGKWDDGA
301: KMLREMIGRN IIPDVVTFSA LIDVFVKEGK LLEAKELYNE MITRGIAPDT ITYNSLIDGF CKENCLHEAN QMFDLMVSKG CEPDIVTYSI LINSYCKAKR
401: VDDGMRLFRE ISSKGLIPNT ITYNTLVLGF CQSGKLNAAK ELFQEMVSRG VPPSVVTYGI LLDGLCDNGE LNKALEIFEK MQKSRMTLGI GIYNIIIHGM
501: CNASKVDDAW SLFCSLSDKG VKPDVVTYNV MIGGLCKKGS LSEADMLFRK MKEDGCTPDD FTYNILIRAH LGGSGLISSV ELIEEMKVCG FSADSSTIKM
601: VIDMLSDRRL DKSFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ83]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.