Factsheet for TraesCS1D01G068400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G067400.1	Wheat	mitochondrion	92.47	92.24
TraesCS1B01G085900.1	Wheat	mitochondrion	90.16	91.15
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	91.62	90.84
TraesCS1D01G068900.1	Wheat	mitochondrion	78.25	79.21
TraesCS1D01G068600.1	Wheat	plastid	32.32	78.24
TraesCS1D01G068500.1	Wheat	mitochondrion	76.91	77.96
TraesCS1D01G068700.1	Wheat	cytosol	40.83	76.54
TraesCS1D01G068800.1	Wheat	plastid	73.51	74.14
TraesCS1D01G069100.1	Wheat	mitochondrion	57.72	73.87
TraesCS1D01G058400.1	Wheat	cytosol	45.93	73.4
TraesCS1D01G058500.1	Wheat	plastid	50.3	72.63
TraesCS6D01G290900.1	Wheat	mitochondrion	63.91	71.76
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	60.63	71.59
TraesCS1D01G058000.1	Wheat	cytosol	35.12	71.18
TraesCS1D01G055300.1	Wheat	cytosol	53.22	70.87
TraesCS1D01G076500.1	Wheat	mitochondrion	57.11	70.78
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	57.59	70.43
TraesCS1D01G056200.1	Wheat	mitochondrion	70.23	70.06
TraesCS1D01G076700.1	Wheat	cytosol	28.43	70.06
TraesCS1D01G057800.1	Wheat	mitochondrion	30.86	69.97
TraesCS1D01G076400.1	Wheat	cytosol	30.86	69.97
TraesCS1D01G067600.1	Wheat	cytosol	30.98	69.86
TraesCS1D01G056700.1	Wheat	cytosol	51.4	69.69
TraesCS1D01G056600.1	Wheat	mitochondrion	17.01	69.31
TraesCS1D01G057700.1	Wheat	cytosol	27.1	68.62
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	18.47	66.67
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	27.22	65.5
TraesCS1D01G076900.1	Wheat	plastid	49.33	61.8
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	59.05	61.75
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	59.3	61.62
TraesCS1D01G033000.1	Wheat	cytosol	29.77	60.64
KXG28799	Sorghum	plastid	53.46	57.89
Zm00001d007534_P001	Maize	plastid	53.83	57.01
Zm00001d007531_P001	Maize	plastid	56.38	57.0
TraesCS2D01G532200.1	Wheat	cytosol	20.29	57.0
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	45.56	56.9
TraesCS2D01G532600.1	Wheat	plastid	53.46	56.7
Zm00001d007559_P001	Maize	plastid	56.26	56.67
Zm00001d007548_P001	Maize	plastid	56.01	56.63
Zm00001d007555_P001	Maize	plastid	55.89	56.51
TraesCS2D01G532300.1	Wheat	plastid	53.22	56.3
TraesCS2D01G532400.1	Wheat	cytosol	41.19	55.48
TraesCS2D01G532500.1	Wheat	plastid	45.56	55.15
TraesCS2D01G532100.1	Wheat	mitochondrion	45.81	54.48
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	49.33	53.0
TraesCS6D01G083400.1	Wheat	mitochondrion	31.47	52.54
TraesCS7D01G231400.1	Wheat	cytosol, plastid	25.39	51.86
TraesCS6D01G083300.1	Wheat	mitochondrion	28.07	51.79
TraesCS6D01G083100.1	Wheat	cytosol	30.74	51.63
KXG35774	Sorghum	cytosol, mitochondrion	29.53	51.37
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	30.01	51.35
Os04t0349600-01	Rice	plastid	22.6	48.06
TraesCS6D01G017800.1	Wheat	cytosol	30.74	47.11
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	39.61	45.59
Os04t0351333-00	Rice	cytosol	47.02	44.03
TraesCS6D01G017700.1	Wheat	plastid	28.55	44.01
TraesCS6D01G076500.1	Wheat	plastid	22.48	40.84
TraesCS6D01G047700.1	Wheat	mitochondrion	33.17	39.51
Solyc06g007280.2.1	Tomato	cytosol	11.06	35.69
KRH39112	Soybean	cytosol	19.68	32.6
VIT_14s0081g00110.t01	Wine grape	cytosol	19.44	32.59
KRH39054	Soybean	cytosol	19.32	31.99
KRH39057	Soybean	cytosol	19.32	31.99
KRH39074	Soybean	cytosol	19.2	31.79
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.23	31.45
KRH39004	Soybean	cytosol	18.71	30.99
KRH39072	Soybean	cytosol	18.47	30.65
KRH09084	Soybean	plastid	18.59	29.94
KRH40513	Soybean	plastid	12.76	29.91
Solyc06g005220.2.1	Tomato	cytosol	14.7	29.8
KRH08636	Soybean	cytosol	18.83	29.69
Bra027636.1-P	Field mustard	cytosol	11.66	29.63
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.1	29.5
KRH08671	Soybean	cytosol, mitochondrion	19.81	29.48
KRH08628	Soybean	plastid	19.68	29.35
VIT_14s0081g00120.t01	Wine grape	plastid	20.78	29.33
KRH09154	Soybean	mitochondrion	19.81	29.32
VIT_14s0081g00270.t01	Wine grape	plastid	20.66	29.31
PGSC0003DMT400052977	Potato	cytosol	13.85	29.31
KRH08639	Soybean	mitochondrion, plastid	19.93	29.03
Bra006187.1-P	Field mustard	plastid	10.21	28.87
Bra026882.1-P	Field mustard	cytosol	18.71	28.84
KRH39066	Soybean	cytosol	19.44	28.83
KRH48615	Soybean	mitochondrion	19.08	28.81
KRH17148	Soybean	mitochondrion	18.95	28.62
AT1G63330.2	Thale cress	cytosol	19.44	28.62
KRH08277	Soybean	plastid	19.68	28.57
Bra026884.1-P	Field mustard	cytosol	15.92	28.54
PGSC0003DMT400008759	Potato	cytosol	11.06	28.53
KRH08625	Soybean	plastid	19.93	28.47
KRH39050	Soybean	mitochondrion	18.23	28.2
KRH08607	Soybean	cytosol	19.2	28.16
Solyc06g007740.1.1	Tomato	cytosol	20.17	28.14
Solyc06g007810.1.1	Tomato	cytosol	9.11	27.99
AT5G16640.1	Thale cress	mitochondrion	17.13	27.98
PGSC0003DMT400053185	Potato	mitochondrion	20.05	27.97
PGSC0003DMT400025067	Potato	cytosol	16.16	27.94
KRH09121	Soybean	mitochondrion	18.1	27.9
PGSC0003DMT400008757	Potato	cytosol	16.77	27.71
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.62	27.62
KRH41817	Soybean	mitochondrion	18.59	27.57
KRH40400	Soybean	plastid	19.32	27.56
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.52	27.47
KRH09082	Soybean	cytosol	13.61	27.45
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.14	27.23
PGSC0003DMT400025074	Potato	cytosol	18.23	27.17
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.41	27.14
KRH31646	Soybean	cytosol	17.01	27.03
Solyc06g007300.1.1	Tomato	extracellular	19.44	27.03
AT1G62670.1	Thale cress	mitochondrion	20.66	26.98
AT1G63130.1	Thale cress	mitochondrion	20.66	26.98
VIT_14s0030g02280.t01	Wine grape	plastid	18.35	26.92
AT1G62930.1	Thale cress	plastid	20.53	26.87
AT1G63400.1	Thale cress	cytosol, plastid	18.83	26.86
KRH25652	Soybean	cytosol, golgi	17.5	26.67
Bra021192.1-P	Field mustard	plastid	16.28	26.59
AT1G63080.3	Thale cress	mitochondrion	19.81	26.55
PGSC0003DMT400056663	Potato	plastid	18.95	26.53
AT1G62914.1	Thale cress	mitochondrion	17.01	26.52
PGSC0003DMT400056665	Potato	mitochondrion	18.83	26.32
AT1G62590.1	Thale cress	mitochondrion	20.17	26.18
PGSC0003DMT400008760	Potato	mitochondrion	18.59	26.11
AT1G63150.1	Thale cress	mitochondrion	19.93	26.07
Bra031731.1-P	Field mustard	mitochondrion	16.04	25.98
KRH09095	Soybean	plastid	18.35	25.81
AT1G62910.1	Thale cress	mitochondrion	19.81	25.79
Bra026971.1-P	Field mustard	mitochondrion	19.68	25.76
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.32	25.6
Bra026958.1-P	Field mustard	mitochondrion	19.81	25.59
Bra036649.1-P	Field mustard	cytosol	12.15	25.58
PGSC0003DMT400053182	Potato	cytosol	18.59	25.54
Bra026954.1-P	Field mustard	mitochondrion	20.17	25.54
AT1G63070.1	Thale cress	mitochondrion	18.23	25.42
KRH09097	Soybean	plastid	17.98	25.39
Bra016762.1-P	Field mustard	mitochondrion	18.71	25.37
PGSC0003DMT400052971	Potato	mitochondrion	18.23	25.3
AT1G12300.1	Thale cress	mitochondrion	19.56	25.27
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.65	25.23
Solyc04g080120.1.1	Tomato	extracellular	18.71	25.16
Bra028267.1-P	Field mustard	mitochondrion	19.08	25.08
AT1G64580.1	Thale cress	mitochondrion	15.92	25.05
Bra025516.1-P	Field mustard	cytosol, mitochondrion	14.46	24.95
Bra036651.1-P	Field mustard	mitochondrion	16.16	24.86
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.82	24.85
Bra027029.1-P	Field mustard	mitochondrion	7.29	24.69
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.32	24.69
PGSC0003DMT400053556	Potato	mitochondrion	13.73	24.62
AT3G16710.1	Thale cress	mitochondrion	15.07	24.46
AT1G62680.2	Thale cress	plastid	16.28	24.45
AT1G12700.2	Thale cress	cytosol	18.35	24.43
PGSC0003DMT400015293	Potato	mitochondrion	18.1	24.43
PGSC0003DMT400015298	Potato	mitochondrion	18.1	24.43
AT1G64583.1	Thale cress	mitochondrion	15.19	24.41
Bra026957.1-P	Field mustard	mitochondrion	17.86	24.38
Bra027026.1-P	Field mustard	mitochondrion	15.43	24.28
AT5G41170.1	Thale cress	mitochondrion	15.43	24.1
AT1G06580.1	Thale cress	mitochondrion	14.46	23.8
AT1G62720.1	Thale cress	mitochondrion	13.85	23.51
CDX68679	Canola	cytosol	3.28	23.48
VIT_14s0030g02260.t01	Wine grape	cytosol	12.52	23.25
Bra026401.1-P	Field mustard	plastid	15.07	23.18
KRH08599	Soybean	cytosol, plastid	18.83	23.17
AT4G26800.2	Thale cress	mitochondrion, plastid	13.97	22.37
AT1G64100.2	Thale cress	cytosol	21.87	22.33
Bra027726.1-P	Field mustard	mitochondrion	12.52	21.87
KRH09085	Soybean	mitochondrion	18.23	21.31
Bra027656.1-P	Field mustard	cytosol	22.96	20.09
KRH12873	Soybean	cytosol	16.16	19.11
KRH39064	Soybean	cytosol	20.53	17.44
Bra016758.1-P	Field mustard	plastid	19.44	13.8

Protein Annotations

EnsemblPlants:TraesCS1D01G068400.1	EnsemblPlantsGene:TraesCS1D01G068400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:49956256..49958727

Molecular Weight (calculated)

91253.2 Da

IEP (calculated)

8.359

GRAVY (calculated)

-0.041

Length

823 amino acids

Sequence
(BLAST)

001: MSRLRLRHCS TTPMSRLRRR RRLSSSTSRP TPSWSPRAAF AAATERVRDG TLGPQDAHHL FDELFQQATP VPERPLNGFL AALTRATPSE ACRDGPALAL
101: SLFNRVCREE AGMRVAPPTI FTYGVLMNCC CHTRRPELGL AFFGRLLRTG LKADKTVANT VLKCLCCAKR TDDAVKVLLH RMTELGCVPD AFSYAIVLKS
201: LCDDNRSQQA LDLLRMMAKE EGVCSPDVVT YNTVIHGFFK EGKIGKACNL FHEMTKQGFV PNVVTYNSVI NALCKARATD NAELFLRQMV DNGVQPNKVT
301: YTSMIHGYST LGRWKEATKL FREMTSSGLI PDIVTWNSFI DSLCKHGRSK EAAEIFDSMA AKGHRPNIVT YGILLHGYAR EGCFADMMSL FNSMEGDGIV
401: ANCLVFTILI DAYAKRGMMD EAMLILTEMQ GQGLSPDVFT YSTLISALCR KGKLADAMDK LSEMIGTGVQ PNTVVYHSLI QGFCTHGDLV KAKELVYEMM
501: TKGIPCPNTA FFSSIVHSLC KEGRVMDAHH IFDLVKDIGE RSDIIMFNTL IDGYCLVGEM GKAFSVLDVM ISAGIEPDIF TYNTLVNGYF KSGRIDDGLN
601: LFREMSHKEI KPTTVTYNII LDGLFRAGRT VAAKKMLHEM IGCGTTVSLS TYTIILRGLC RNNCTDEAIV MFQKLRTINV KFNITTLNTM INSMYTVQRR
701: EEAKDLFAAI SDSGLVPNAS TYGIMIRNLL KEGSVEEADN MFSSMEKSGC APCSRLLNDT IRTLLEKGEI VKAGNYMSKV DGKSISLEAS TSSLLLSLFS
801: GKGKYREQIQ LLPVKYQFFD GVS

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.