Factsheet for TraesCS2D01G532400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G532500.1	Wheat	plastid	92.64	83.24
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	87.56	81.18
TraesCS2D01G532100.1	Wheat	mitochondrion	87.07	76.88
TraesCS2D01G532200.1	Wheat	cytosol	35.35	73.72
TraesCS2D01G532600.1	Wheat	plastid	92.96	73.2
TraesCS2A01G530600.1	Wheat	cytosol	86.25	68.89
TraesCS2D01G532300.1	Wheat	plastid	86.91	68.25
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	41.24	57.4
TraesCS1D01G058400.1	Wheat	cytosol	44.52	52.82
TraesCS1D01G058000.1	Wheat	cytosol	34.04	51.23
TraesCS1D01G076500.1	Wheat	mitochondrion	54.5	50.15
TraesCS1D01G057700.1	Wheat	cytosol	26.35	49.54
TraesCS1D01G055300.1	Wheat	cytosol	49.75	49.19
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	55.97	49.07
TraesCS1D01G056700.1	Wheat	cytosol	48.12	48.43
TraesCS1D01G068700.1	Wheat	cytosol	34.7	48.29
TraesCS1D01G076700.1	Wheat	cytosol	25.86	47.31
TraesCS1D01G076400.1	Wheat	cytosol	27.82	46.83
TraesCS1D01G033000.1	Wheat	cytosol	30.93	46.78
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	50.9	46.21
TraesCS6D01G017800.1	Wheat	cytosol	39.77	45.25
TraesCS1D01G067600.1	Wheat	cytosol	26.84	44.93
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	56.14	43.58
TraesCS6D01G017700.1	Wheat	plastid	37.64	43.07
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	55.81	43.06
TraesCS1D01G056200.1	Wheat	mitochondrion	57.94	42.91
TraesCS1D01G068500.1	Wheat	mitochondrion	56.46	42.49
TraesCS1D01G068800.1	Wheat	plastid	56.63	42.4
TraesCS1D01G068900.1	Wheat	mitochondrion	55.81	41.94
TraesCS1D01G068400.1	Wheat	mitochondrion	55.48	41.19
TraesCS6D01G083300.1	Wheat	mitochondrion	29.95	41.03
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	46.15	39.44
TraesCS1D01G058500.1	Wheat	plastid	36.66	39.3
TraesCS6D01G290900.1	Wheat	mitochondrion	46.97	39.15
TraesCS6D01G083400.1	Wheat	mitochondrion	31.42	38.95
TraesCS1D01G076900.1	Wheat	plastid	40.1	37.29
TraesCS6D01G083100.1	Wheat	cytosol	29.62	36.94
TraesCS1D01G069100.1	Wheat	mitochondrion	38.46	36.55
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	27.82	35.34
TraesCS7D01G231400.1	Wheat	cytosol, plastid	23.08	34.99
TraesCS1D01G068600.1	Wheat	plastid	19.15	34.41
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	17.84	31.87
TraesCS6D01G076500.1	Wheat	plastid	23.4	31.57
TraesCS6D01G047700.1	Wheat	mitochondrion	35.35	31.26
TraesCS1D01G057800.1	Wheat	mitochondrion	18.49	31.13
Solyc06g007280.2.1	Tomato	cytosol	11.95	28.63
KRH40513	Soybean	plastid	15.71	27.35
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.46	26.21
PGSC0003DMT400052977	Potato	cytosol	16.37	25.71
VIT_14s0081g00110.t01	Wine grape	cytosol	20.62	25.66
Solyc06g005220.2.1	Tomato	cytosol	16.86	25.37
KRH39074	Soybean	cytosol	20.62	25.35
Bra036649.1-P	Field mustard	cytosol	16.2	25.32
KRH39054	Soybean	cytosol	20.46	25.15
KRH39112	Soybean	cytosol	20.46	25.15
Bra027029.1-P	Field mustard	mitochondrion	9.82	24.69
Bra027636.1-P	Field mustard	cytosol	12.93	24.38
KRH39004	Soybean	cytosol	19.8	24.35
KRH09082	Soybean	cytosol	16.04	24.02
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.8	23.96
KRH39057	Soybean	cytosol	19.48	23.94
KRH17148	Soybean	mitochondrion	21.28	23.85
KRH39072	Soybean	cytosol	19.15	23.59
KRH08636	Soybean	cytosol	20.13	23.56
VIT_14s0081g00270.t01	Wine grape	plastid	21.93	23.1
KRH39066	Soybean	cytosol	20.95	23.06
Bra006187.1-P	Field mustard	plastid	10.97	23.02
Bra026884.1-P	Field mustard	cytosol	17.18	22.88
KRH31646	Soybean	cytosol	19.31	22.78
KRH39050	Soybean	mitochondrion	19.8	22.74
Bra026882.1-P	Field mustard	cytosol	19.8	22.66
VIT_14s0081g00120.t01	Wine grape	plastid	21.6	22.64
KRH08607	Soybean	cytosol	20.79	22.64
KRH09084	Soybean	plastid	18.66	22.31
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.15	22.29
KRH08628	Soybean	plastid	19.8	21.92
KRH09121	Soybean	mitochondrion	19.15	21.91
AT5G16640.1	Thale cress	mitochondrion	18.0	21.83
AT1G63330.2	Thale cress	cytosol	19.97	21.82
KRH08277	Soybean	plastid	20.13	21.69
PGSC0003DMT400008757	Potato	cytosol	17.68	21.69
KRH25652	Soybean	cytosol, golgi	19.15	21.67
KRH48615	Soybean	mitochondrion	19.31	21.65
Solyc06g007810.1.1	Tomato	cytosol	9.49	21.64
VIT_14s0030g02280.t01	Wine grape	plastid	19.8	21.57
KRH08671	Soybean	cytosol, mitochondrion	19.48	21.52
PGSC0003DMT400008759	Potato	cytosol	11.13	21.32
KRH41817	Soybean	mitochondrion	19.31	21.26
KRH09154	Soybean	mitochondrion	19.31	21.22
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.53	21.17
AT1G06580.1	Thale cress	mitochondrion	17.18	21.0
Bra036651.1-P	Field mustard	mitochondrion	18.33	20.93
KRH08625	Soybean	plastid	19.64	20.83
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.86	20.81
PGSC0003DMT400025067	Potato	cytosol	16.2	20.8
KRH40400	Soybean	plastid	19.64	20.8
PGSC0003DMT400025074	Potato	cytosol	18.66	20.65
AT1G62670.1	Thale cress	mitochondrion	21.28	20.63
AT1G63400.1	Thale cress	cytosol, plastid	19.48	20.62
AT1G62720.1	Thale cress	mitochondrion	16.37	20.62
KRH08639	Soybean	mitochondrion, plastid	18.99	20.53
AT1G62930.1	Thale cress	plastid	21.11	20.51
Solyc06g007300.1.1	Tomato	extracellular	19.8	20.44
AT1G62680.2	Thale cress	plastid	18.33	20.44
Solyc06g007740.1.1	Tomato	cytosol	19.64	20.34
AT1G64583.1	Thale cress	mitochondrion	17.02	20.31
TraesCS1D01G056600.1	Wheat	mitochondrion	6.71	20.3
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.0	20.26
AT1G63080.3	Thale cress	mitochondrion	20.29	20.2
Bra026971.1-P	Field mustard	mitochondrion	20.79	20.19
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.11	20.19
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	7.53	20.18
AT1G62910.1	Thale cress	mitochondrion	20.79	20.09
AT1G64580.1	Thale cress	mitochondrion	17.18	20.08
AT1G62914.1	Thale cress	mitochondrion	17.35	20.08
PGSC0003DMT400015293	Potato	mitochondrion	19.97	20.0
PGSC0003DMT400015298	Potato	mitochondrion	19.97	20.0
PGSC0003DMT400052971	Potato	mitochondrion	19.31	19.9
Bra031731.1-P	Field mustard	mitochondrion	16.53	19.88
PGSC0003DMT400053185	Potato	mitochondrion	19.15	19.83
PGSC0003DMT400053556	Potato	mitochondrion	14.89	19.83
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.13	19.81
Solyc04g080120.1.1	Tomato	extracellular	19.8	19.77
AT3G16710.1	Thale cress	mitochondrion	16.37	19.72
AT1G63150.1	Thale cress	mitochondrion	20.29	19.71
Bra027026.1-P	Field mustard	mitochondrion	16.86	19.69
AT1G63070.1	Thale cress	mitochondrion	18.99	19.66
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.8	19.55
AT1G63130.1	Thale cress	mitochondrion	20.13	19.52
Bra028267.1-P	Field mustard	mitochondrion	19.97	19.49
AT1G62590.1	Thale cress	mitochondrion	19.97	19.24
AT1G12300.1	Thale cress	mitochondrion	19.97	19.15
Bra026958.1-P	Field mustard	mitochondrion	19.8	19.0
AT5G41170.1	Thale cress	mitochondrion	16.37	18.98
PGSC0003DMT400056665	Potato	mitochondrion	18.17	18.85
KRH09095	Soybean	plastid	18.0	18.8
Bra021192.1-P	Field mustard	plastid	15.38	18.65
Bra026954.1-P	Field mustard	mitochondrion	19.8	18.62
KRH09097	Soybean	plastid	17.68	18.52
PGSC0003DMT400008760	Potato	mitochondrion	17.68	18.43
PGSC0003DMT400056663	Potato	plastid	17.68	18.37
Bra016762.1-P	Field mustard	mitochondrion	18.17	18.29
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.15	18.17
PGSC0003DMT400053182	Potato	cytosol	17.68	18.03
KRH08599	Soybean	cytosol, plastid	19.48	17.79
Bra026401.1-P	Field mustard	plastid	15.55	17.76
AT1G12700.2	Thale cress	cytosol	17.84	17.64
VIT_14s0030g02260.t01	Wine grape	cytosol	12.6	17.38
AT4G26800.2	Thale cress	mitochondrion, plastid	14.57	17.32
Bra026957.1-P	Field mustard	mitochondrion	17.02	17.25
Bra026836.1-P	Field mustard	cytosol, mitochondrion	13.75	17.11
KRH12873	Soybean	cytosol	19.15	16.81
AT1G64100.2	Thale cress	cytosol	21.77	16.5
Bra027726.1-P	Field mustard	mitochondrion	12.44	16.14
KRH09085	Soybean	mitochondrion	18.17	15.77
Bra027656.1-P	Field mustard	cytosol	22.09	14.35
KRH39064	Soybean	cytosol	21.11	13.31
CDX68679	Canola	cytosol	2.45	13.04
Bra016758.1-P	Field mustard	plastid	18.99	10.01

Protein Annotations

EnsemblPlants:TraesCS2D01G532400.1	EnsemblPlantsGene:TraesCS2D01G532400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:617731227..617733186

Molecular Weight (calculated)

67732.4 Da

IEP (calculated)

6.650

GRAVY (calculated)

0.185

Length

611 amino acids

Sequence
(BLAST)

001: MDCCCRAGRP DLVVAFFGRL LRLGLRLEVI SFSNLLKGLC QAKRTNEAVD LLLHRTPELD CVPNVFSYSI VINGCFKEGE VDKACNLFHG MIQLGVQPNV
101: VIYTSIIDAL SKCGAMDKAE VVFRQMVDKG IGPDVMTCTS LIHGYSISGR WKAAVRVFKE MISLGVVPDT VMWNSFVDSL CKHRRTKEAR VIFDSMAAKG
201: QKPDTVSYSI MLNGYVKEGC FDDMTGLFNS MLQNGVVPNH HIFNILINAY AKRGLMDEAM HMFEVMRQQG VNPDVVDYLV VMDSLCKMGR MDAALDKFNQ
301: MVNQGVSPNK AVYQCLVLGS CSHGDFVKAK ELISEALNRG LCSNSVFFYP VINDLCKEGK VKEAQDMFDF IVGIGQRPDV IMYNSLMDGY CLVGKVEEAL
401: RVLDAMKSAG LQPDAIMYVS AKEKFDTMIE SGIPVGIDTY NIVLSGLCKN NCTDEAIELF KKLRAMNVKI DVITLNTMIS AMFKTRRIEE AKDLFATISA
501: IGLVPSVVTY ILMITNFIKE GLLAEADDMF LAMEKAGCAP NSSLLNQVVR VLLEKGAAVQ AATYLAKIDA KHLSLEASTV SLIISLFSRK GELWEHVKLL
601: PVKYQPPEMF D

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.