Factsheet for TraesCS1D01G055500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G057700.1	Wheat	cytosol	38.34	79.38
TraesCS1A01G054800.1	Wheat	cytosol	68.05	78.69
TraesCS1D01G055300.1	Wheat	cytosol	70.73	77.02
TraesCS1D01G056700.1	Wheat	cytosol	69.09	76.61
TraesCS1D01G076700.1	Wheat	cytosol	36.55	73.65
TraesCS1D01G058400.1	Wheat	cytosol	56.02	73.2
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	72.81	70.3
TraesCS1D01G067600.1	Wheat	cytosol	37.15	68.49
TraesCS1D01G068700.1	Wheat	cytosol	44.28	67.88
TraesCS1D01G076400.1	Wheat	cytosol	36.26	67.22
TraesCS1D01G076500.1	Wheat	mitochondrion	66.12	67.02
TraesCS1D01G058000.1	Wheat	cytosol	39.23	65.02
TraesCS1D01G056200.1	Wheat	mitochondrion	79.05	64.48
TraesCS1D01G033000.1	Wheat	cytosol	36.55	60.89
TraesCS1D01G058500.1	Wheat	plastid	50.22	59.3
TraesCS1D01G068900.1	Wheat	mitochondrion	70.58	58.43
TraesCS1D01G068800.1	Wheat	plastid	70.13	57.84
TraesCS1D01G068500.1	Wheat	mitochondrion	69.54	57.64
TraesCS1D01G068400.1	Wheat	mitochondrion	70.43	57.59
TraesCS2D01G532200.1	Wheat	cytosol	24.07	55.29
TraesCS6D01G290900.1	Wheat	mitochondrion	58.84	54.02
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	50.37	51.44
KXG35774	Sorghum	cytosol, mitochondrion	35.96	51.16
TraesCS2D01G532400.1	Wheat	cytosol	46.21	50.9
TraesCS1D01G069100.1	Wheat	mitochondrion	48.14	50.39
TraesCS2D01G532500.1	Wheat	plastid	49.93	49.41
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	57.65	49.3
TraesCS2D01G532100.1	Wheat	mitochondrion	49.93	48.55
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	56.61	48.11
Zm00001d007555_P001	Maize	plastid	55.87	46.19
KXG28799	Sorghum	plastid	52.15	46.18
TraesCS1D01G076900.1	Wheat	plastid	45.02	46.12
Zm00001d007531_P001	Maize	plastid	55.57	45.95
Zm00001d007559_P001	Maize	plastid	55.72	45.9
Zm00001d007548_P001	Maize	plastid	55.42	45.82
TraesCS6D01G017800.1	Wheat	cytosol	36.4	45.62
Zm00001d007534_P001	Maize	plastid	52.45	45.43
TraesCS6D01G083300.1	Wheat	mitochondrion	29.42	44.39
TraesCS2D01G532600.1	Wheat	plastid	50.82	44.07
TraesCS1D01G057800.1	Wheat	mitochondrion	23.63	43.8
TraesCS2D01G532300.1	Wheat	plastid	50.07	43.32
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	49.03	43.08
TraesCS6D01G017700.1	Wheat	plastid	32.84	41.39
TraesCS6D01G083400.1	Wheat	mitochondrion	30.16	41.18
TraesCS1D01G068600.1	Wheat	plastid	20.65	40.88
TraesCS6D01G083100.1	Wheat	cytosol	28.83	39.59
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	41.31	38.88
Os04t0351333-00	Rice	cytosol	50.37	38.57
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	19.32	38.01
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	27.04	37.84
TraesCS7D01G231400.1	Wheat	cytosol, plastid	22.14	36.97
TraesCS6D01G047700.1	Wheat	mitochondrion	33.28	32.42
TraesCS6D01G076500.1	Wheat	plastid	20.51	30.46
Solyc06g005220.2.1	Tomato	cytosol	17.68	29.31
Solyc06g007280.2.1	Tomato	cytosol	11.0	29.02
Bra027636.1-P	Field mustard	cytosol	13.97	29.01
PGSC0003DMT400052977	Potato	cytosol	16.05	27.76
KRH39054	Soybean	cytosol	20.06	27.16
VIT_14s0081g00110.t01	Wine grape	cytosol	19.76	27.09
KRH39004	Soybean	cytosol	19.76	26.76
PGSC0003DMT400008759	Potato	cytosol	12.63	26.65
Os04t0349600-01	Rice	plastid	15.3	26.61
KRH39074	Soybean	cytosol	19.61	26.56
Solyc06g007810.1.1	Tomato	cytosol	10.55	26.49
KRH39112	Soybean	cytosol	19.32	26.16
Bra026884.1-P	Field mustard	cytosol	17.83	26.14
KRH39072	Soybean	cytosol	19.17	26.01
KRH39057	Soybean	cytosol	19.17	25.96
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	8.77	25.88
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.13	25.58
KRH40513	Soybean	plastid	13.22	25.36
KRH09082	Soybean	cytosol	15.3	25.25
CDX68679	Canola	cytosol	4.31	25.22
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.87	25.15
KRH08636	Soybean	cytosol	19.02	24.52
PGSC0003DMT400025067	Potato	cytosol	17.24	24.37
AT1G63330.2	Thale cress	cytosol	20.21	24.33
PGSC0003DMT400008757	Potato	cytosol	17.98	24.3
TraesCS1D01G056600.1	Wheat	mitochondrion	7.28	24.26
PGSC0003DMT400025074	Potato	cytosol	19.76	24.09
KRH09084	Soybean	plastid	18.28	24.07
PGSC0003DMT400025087	Potato	endoplasmic reticulum	17.68	24.04
KRH39066	Soybean	cytosol	19.76	23.96
KRH17148	Soybean	mitochondrion	19.32	23.85
VIT_14s0081g00120.t01	Wine grape	plastid	20.65	23.84
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.69	23.59
KRH08607	Soybean	cytosol	19.61	23.53
Bra031731.1-P	Field mustard	mitochondrion	17.68	23.43
PGSC0003DMT400053185	Potato	mitochondrion	20.51	23.39
KRH08628	Soybean	plastid	19.17	23.37
Bra006187.1-P	Field mustard	plastid	10.1	23.37
KRH25652	Soybean	cytosol, golgi	18.72	23.33
KRH48615	Soybean	mitochondrion	18.87	23.3
Bra036649.1-P	Field mustard	cytosol	13.52	23.27
KRH08625	Soybean	plastid	19.91	23.26
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.13	23.24
Bra026882.1-P	Field mustard	cytosol	18.43	23.22
KRH09154	Soybean	mitochondrion	19.17	23.2
KRH08639	Soybean	mitochondrion, plastid	19.47	23.19
VIT_14s0081g00270.t01	Wine grape	plastid	19.91	23.1
KRH08671	Soybean	cytosol, mitochondrion	18.87	22.97
KRH41817	Soybean	mitochondrion	18.87	22.88
Solyc06g007740.1.1	Tomato	cytosol	19.91	22.71
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.28	22.65
AT1G62930.1	Thale cress	plastid	21.1	22.58
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.8	22.54
AT1G63130.1	Thale cress	mitochondrion	21.1	22.54
AT1G12300.1	Thale cress	mitochondrion	21.25	22.45
KRH09121	Soybean	mitochondrion	17.68	22.28
Bra027029.1-P	Field mustard	mitochondrion	8.02	22.22
KRH40400	Soybean	plastid	19.02	22.18
Solyc06g007300.1.1	Tomato	extracellular	19.47	22.13
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.95	22.07
KRH08277	Soybean	plastid	18.57	22.05
Bra026971.1-P	Field mustard	mitochondrion	20.51	21.94
AT1G62670.1	Thale cress	mitochondrion	20.51	21.9
AT1G63070.1	Thale cress	mitochondrion	19.17	21.86
AT1G63080.3	Thale cress	mitochondrion	19.91	21.82
VIT_14s0030g02280.t01	Wine grape	plastid	18.13	21.75
AT1G62910.1	Thale cress	mitochondrion	20.36	21.68
PGSC0003DMT400008760	Potato	mitochondrion	18.87	21.67
AT5G16640.1	Thale cress	mitochondrion	16.2	21.63
AT1G62590.1	Thale cress	mitochondrion	20.36	21.61
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.75	21.59
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.65	21.58
PGSC0003DMT400056665	Potato	mitochondrion	18.87	21.56
PGSC0003DMT400056663	Potato	plastid	18.72	21.43
Bra016762.1-P	Field mustard	mitochondrion	19.32	21.42
KRH39050	Soybean	mitochondrion	16.64	21.05
Bra026958.1-P	Field mustard	mitochondrion	19.91	21.04
AT1G63150.1	Thale cress	mitochondrion	19.61	20.99
Bra028267.1-P	Field mustard	mitochondrion	19.47	20.93
PGSC0003DMT400052971	Potato	mitochondrion	18.43	20.91
AT1G63400.1	Thale cress	cytosol, plastid	17.83	20.8
VIT_14s0030g02260.t01	Wine grape	cytosol	13.67	20.77
Solyc04g080120.1.1	Tomato	extracellular	18.87	20.75
Bra026957.1-P	Field mustard	mitochondrion	18.57	20.73
PGSC0003DMT400053182	Potato	cytosol	18.43	20.7
KRH31646	Soybean	cytosol	15.9	20.66
KRH09097	Soybean	plastid	17.83	20.58
AT1G12700.2	Thale cress	cytosol	18.87	20.55
AT1G64583.1	Thale cress	mitochondrion	15.6	20.51
Bra026954.1-P	Field mustard	mitochondrion	19.76	20.46
Bra021192.1-P	Field mustard	plastid	15.3	20.44
AT1G62720.1	Thale cress	mitochondrion	14.71	20.41
AT1G06580.1	Thale cress	mitochondrion	15.16	20.4
Bra025516.1-P	Field mustard	cytosol, mitochondrion	14.41	20.34
AT3G16710.1	Thale cress	mitochondrion	15.16	20.12
Bra036651.1-P	Field mustard	mitochondrion	15.9	20.0
KRH09095	Soybean	plastid	17.38	20.0
PGSC0003DMT400015293	Potato	mitochondrion	18.13	20.0
PGSC0003DMT400015298	Potato	mitochondrion	18.13	20.0
AT5G41170.1	Thale cress	mitochondrion	15.45	19.73
AT1G64580.1	Thale cress	mitochondrion	15.16	19.5
AT1G62914.1	Thale cress	mitochondrion	15.16	19.32
AT1G62680.2	Thale cress	plastid	15.6	19.16
KRH08599	Soybean	cytosol, plastid	18.72	18.83
Bra027026.1-P	Field mustard	mitochondrion	14.56	18.74
PGSC0003DMT400053556	Potato	mitochondrion	12.78	18.74
AT1G64100.2	Thale cress	cytosol	22.29	18.61
KRH09085	Soybean	mitochondrion	18.28	17.47
Bra026401.1-P	Field mustard	plastid	13.67	17.2
Bra027726.1-P	Field mustard	mitochondrion	11.74	16.77
Bra027656.1-P	Field mustard	cytosol	23.03	16.47
KRH12873	Soybean	cytosol	16.94	16.38
AT4G26800.2	Thale cress	mitochondrion, plastid	12.33	16.15
KRH39064	Soybean	cytosol	20.8	14.45
Bra016758.1-P	Field mustard	plastid	19.61	11.39

Protein Annotations

EnsemblPlants:TraesCS1D01G055500.1	EnsemblPlantsGene:TraesCS1D01G055500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1D:-:36622175..36624267

Molecular Weight (calculated)

74199.7 Da

IEP (calculated)

7.803

GRAVY (calculated)

0.033

Length

673 amino acids

Sequence
(BLAST)

001: MDCCCRARRP ELGLALFGRF LRKGLKTDQT GASTFLKCLC YAKRTDEAVD VLLHRMSELG CVPDAISYNT VLKSLCDNGM SQRGLELLQL VAGKGGGCFP
101: DVVAYSTVIH GFFQEGEAGK ACSLFHEMMQ QGIVPSVVTY SSIIDALCKA RAMDRAELVL RQMVANGAQP DTVTYNCMIN GYATSGRLKE SAKMFREMKS
201: RGLMPDIVTC NSFLSSLCKH GRSKEAAEFF DSMTAKGHKP DIVSYRILLH GRLRVFNILI DAYAKHGMTD EAMLIFTEMR EKGVGPDAFT YSTVIAALSR
301: MGRLTDAMGK LSQMIAMGVQ PDTAVYHSLI QGCCIHGDLV KAKELVSEMM NKGIPRPSIA FFSSVINYLC KEGRVMDAHD IFDLVIDMGE RPDVITFNSL
401: IDGYCLVDKM DKALRVLDSM VSFGIEPNVV TYNTLVNGYC TNGRIDDGLT LFREMPHKRI KPDTVTYGII LDGLFRSGST VAARKMFHEM TESGITVSIS
501: TYSIILGGLC RNNCADEAIT LFQKLGTMNV KFDIAILNTM INAMYKVGRR EEAKDLFAAI SPSSLVPNES TYAVMIKILL KDRAVEDADN MFSSMDNSGI
601: VPSSRLINDI IRMLLEKGEI AKAGNYLSKV DGKSISLEAS TASLMLSLFS RKGKHQEDIK LLPAKYQFFD GFG

Best Arabidopsis Sequence Match ( AT1G63130.1 )
(BLAST)

001: MRRLFAISST GNRFVHRSLL GKGKCGTAPP SFSHCSFWVR DFSGVRYDYR KISINRLNDL KLDDAVNLFG DMVKSRPFPS IVEFSKLLSA IAKMNKFDLV
101: ISLGEQMQNL GISHNLYTYS ILINCFCRRS QLSLALAVLA KMMKLGYEPD IVTLNSLLNG FCHGNRISDA VSLVGQMVEM GYQPDSFTFN TLIHGLFRHN
201: RASEAVALVD RMVVKGCQPD LVTYGIVVNG LCKRGDIDLA LSLLKKMEQG KIEPGVVIYN TIIDALCNYK NVNDALNLFT EMDNKGIRPN VVTYNSLIRC
301: LCNYGRWSDA SRLLSDMIER KINPNVVTFS ALIDAFVKEG KLVEAEKLYD EMIKRSIDPD IFTYSSLING FCMHDRLDEA KHMFELMISK DCFPNVVTYN
401: TLIKGFCKAK RVDEGMELFR EMSQRGLVGN TVTYTTLIHG FFQARECDNA QIVFKQMVSD GVLPDIMTYS ILLDGLCNNG KVETALVVFE YLQRSKMEPD
501: IYTYNIMIEG MCKAGKVEDG WDLFCSLSLK GVKPNVVTYT TMMSGFCRKG LKEEADALFR EMKEEGPLPD SGTYNTLIRA HLRDGDKAAS AELIREMRSC
601: RFVGDASTIG LVTNMLHDGR LDKSFLKMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g63130, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.