Factsheet for TraesCS1D01G055300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G056700.1	Wheat	cytosol	74.76	76.11
TraesCS1D01G058400.1	Wheat	cytosol	62.78	75.34
TraesCS1D01G057700.1	Wheat	cytosol	39.32	74.77
TraesCS1A01G054500.1	Wheat	mitochondrion	91.26	72.31
TraesCS1D01G076700.1	Wheat	cytosol	38.67	71.56
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	77.02	70.73
TraesCS1A01G054700.2	Wheat	mitochondrion	92.39	70.32
TraesCS1D01G068700.1	Wheat	cytosol	48.06	67.65
TraesCS1D01G067600.1	Wheat	cytosol	39.81	67.4
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	74.76	66.28
TraesCS1D01G076400.1	Wheat	cytosol	38.35	65.29
TraesCS1D01G076500.1	Wheat	mitochondrion	67.8	63.1
TraesCS1D01G058000.1	Wheat	cytosol	39.81	60.59
TraesCS1D01G056200.1	Wheat	mitochondrion	78.96	59.15
TraesCS1D01G033000.1	Wheat	cytosol	38.35	58.66
TraesCS1B01G071600.1	Wheat	mitochondrion	78.32	57.08
TraesCS2D01G532200.1	Wheat	cytosol	25.89	54.61
TraesCS1D01G068800.1	Wheat	plastid	71.52	54.17
TraesCS1D01G068900.1	Wheat	mitochondrion	70.23	53.38
TraesCS1D01G068400.1	Wheat	mitochondrion	70.87	53.22
TraesCS1D01G068500.1	Wheat	mitochondrion	67.96	51.72
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	54.05	50.68
TraesCS2D01G532400.1	Wheat	cytosol	49.19	49.75
TraesCS1D01G058500.1	Wheat	plastid	45.79	49.65
KXG35774	Sorghum	cytosol, mitochondrion	37.22	48.63
TraesCS2D01G532500.1	Wheat	plastid	53.4	48.53
TraesCS6D01G290900.1	Wheat	mitochondrion	57.12	48.16
TraesCS6D01G017800.1	Wheat	cytosol	41.59	47.86
TraesCS2D01G532100.1	Wheat	mitochondrion	53.07	47.4
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	59.71	46.89
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	59.55	46.46
TraesCS6D01G017700.1	Wheat	plastid	38.03	44.01
TraesCS1D01G069100.1	Wheat	mitochondrion	44.82	43.08
TraesCS1D01G076900.1	Wheat	plastid	45.63	42.92
TraesCS2D01G532600.1	Wheat	plastid	53.56	42.65
Zm00001d007531_P001	Maize	plastid	55.66	42.26
Zm00001d007548_P001	Maize	plastid	55.66	42.26
Zm00001d007559_P001	Maize	plastid	55.66	42.11
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	52.1	42.04
Zm00001d007555_P001	Maize	plastid	55.34	42.01
Zm00001d007534_P001	Maize	plastid	52.75	41.96
TraesCS2D01G532300.1	Wheat	plastid	52.75	41.9
KXG28799	Sorghum	plastid	51.13	41.58
TraesCS6D01G083300.1	Wheat	mitochondrion	27.99	38.79
Os04t0351333-00	Rice	cytosol	54.05	38.0
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	42.23	36.5
TraesCS6D01G083100.1	Wheat	cytosol	28.32	35.71
TraesCS6D01G083400.1	Wheat	mitochondrion	27.83	34.89
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	26.54	34.1
TraesCS1D01G057800.1	Wheat	mitochondrion	19.9	33.88
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	18.12	32.75
TraesCS7D01G231400.1	Wheat	cytosol, plastid	21.04	32.26
Solyc06g007280.2.1	Tomato	cytosol	13.27	32.16
TraesCS6D01G047700.1	Wheat	mitochondrion	34.14	30.54
PGSC0003DMT400052977	Potato	cytosol	18.61	29.56
Solyc06g007810.1.1	Tomato	cytosol	12.78	29.48
Solyc06g005220.2.1	Tomato	cytosol	19.26	29.31
Bra027636.1-P	Field mustard	cytosol	15.21	29.01
VIT_14s0081g00110.t01	Wine grape	cytosol	22.98	28.92
CDX68679	Canola	cytosol	5.34	28.7
KRH39074	Soybean	cytosol	22.82	28.37
PGSC0003DMT400008759	Potato	cytosol	14.56	28.21
KRH39054	Soybean	cytosol	22.65	28.17
Bra026884.1-P	Field mustard	cytosol	20.87	28.1
KRH09082	Soybean	cytosol	18.28	27.7
TraesCS6D01G076500.1	Wheat	plastid	20.23	27.59
Bra027029.1-P	Field mustard	mitochondrion	10.84	27.57
KRH39004	Soybean	cytosol	22.17	27.57
KRH39112	Soybean	cytosol	22.17	27.57
Os04t0349600-01	Rice	plastid	17.15	27.39
KRH39057	Soybean	cytosol	22.01	27.36
TraesCS1D01G068600.1	Wheat	plastid	15.05	27.35
KRH39072	Soybean	cytosol	21.68	27.02
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	21.52	26.34
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.06	26.0
PGSC0003DMT400025067	Potato	cytosol	19.9	25.84
PGSC0003DMT400025087	Potato	endoplasmic reticulum	20.23	25.25
KRH08636	Soybean	cytosol	21.2	25.1
Bra006187.1-P	Field mustard	plastid	11.81	25.09
KRH17148	Soybean	mitochondrion	21.84	24.77
KRH09084	Soybean	plastid	20.39	24.66
KRH39066	Soybean	cytosol	22.01	24.5
KRH08607	Soybean	cytosol	22.17	24.42
KRH08628	Soybean	plastid	21.68	24.28
KRH25652	Soybean	cytosol, golgi	21.2	24.26
PGSC0003DMT400008757	Potato	cytosol	19.42	24.1
KRH08671	Soybean	cytosol, mitochondrion	21.36	23.87
VIT_14s0081g00120.t01	Wine grape	plastid	22.49	23.84
PGSC0003DMT400025074	Potato	cytosol	21.04	23.55
AT1G63330.2	Thale cress	cytosol	21.2	23.43
KRH40513	Soybean	plastid	13.27	23.36
VIT_14s0030g02260.t01	Wine grape	cytosol	16.67	23.25
KRH48615	Soybean	mitochondrion	20.39	23.12
KRH08277	Soybean	plastid	21.2	23.1
KRH40400	Soybean	plastid	21.36	22.88
KRH09121	Soybean	mitochondrion	19.74	22.85
KRH08639	Soybean	mitochondrion, plastid	20.87	22.83
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.26	22.67
KRH09154	Soybean	mitochondrion	20.39	22.66
Bra026882.1-P	Field mustard	cytosol	19.58	22.66
Bra031731.1-P	Field mustard	mitochondrion	18.61	22.64
VIT_14s0081g00270.t01	Wine grape	plastid	21.2	22.59
KRH08625	Soybean	plastid	21.04	22.57
KRH41817	Soybean	mitochondrion	20.23	22.52
PGSC0003DMT400053185	Potato	mitochondrion	21.36	22.37
Bra036649.1-P	Field mustard	cytosol	14.08	22.25
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.42	22.1
Solyc06g007740.1.1	Tomato	cytosol	21.04	22.03
Solyc06g007300.1.1	Tomato	extracellular	21.04	21.96
AT1G62670.1	Thale cress	mitochondrion	22.33	21.9
AT5G16640.1	Thale cress	mitochondrion	17.8	21.83
KRH31646	Soybean	cytosol	18.28	21.81
PGSC0003DMT400052971	Potato	mitochondrion	20.87	21.75
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.33	21.6
VIT_14s0030g02280.t01	Wine grape	plastid	19.58	21.57
PGSC0003DMT400056665	Potato	mitochondrion	20.55	21.56
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.52	21.49
PGSC0003DMT400056663	Potato	plastid	20.23	21.26
Solyc04g080120.1.1	Tomato	extracellular	21.04	21.24
Bra016762.1-P	Field mustard	mitochondrion	20.71	21.09
AT1G12300.1	Thale cress	mitochondrion	21.68	21.04
AT1G62930.1	Thale cress	plastid	21.36	20.99
AT1G12620.1	Thale cress	cytosol, mitochondrion	21.04	20.93
KRH39050	Soybean	mitochondrion	17.96	20.86
AT1G62590.1	Thale cress	mitochondrion	21.36	20.82
PGSC0003DMT400008760	Potato	mitochondrion	19.74	20.82
Bra026958.1-P	Field mustard	mitochondrion	21.36	20.72
PGSC0003DMT400053182	Potato	cytosol	20.06	20.7
AT1G12700.2	Thale cress	cytosol	20.55	20.55
AT1G63080.3	Thale cress	mitochondrion	20.39	20.52
Bra026971.1-P	Field mustard	mitochondrion	20.87	20.51
PGSC0003DMT400015293	Potato	mitochondrion	20.23	20.49
PGSC0003DMT400015298	Potato	mitochondrion	20.23	20.49
KRH08599	Soybean	cytosol, plastid	22.17	20.48
AT1G63130.1	Thale cress	mitochondrion	20.87	20.48
KRH09097	Soybean	plastid	19.26	20.41
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.2	20.34
AT1G63070.1	Thale cress	mitochondrion	19.42	20.34
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.7	20.34
Bra026957.1-P	Field mustard	mitochondrion	19.74	20.23
KRH09095	Soybean	plastid	19.09	20.17
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.02	20.16
Bra026954.1-P	Field mustard	mitochondrion	21.2	20.15
AT1G63150.1	Thale cress	mitochondrion	20.39	20.03
Bra028267.1-P	Field mustard	mitochondrion	20.06	19.81
AT3G16710.1	Thale cress	mitochondrion	16.18	19.72
AT1G63400.1	Thale cress	cytosol, plastid	18.28	19.58
AT1G62910.1	Thale cress	mitochondrion	19.9	19.46
Bra021192.1-P	Field mustard	plastid	15.86	19.44
PGSC0003DMT400053556	Potato	mitochondrion	14.4	19.39
Bra036651.1-P	Field mustard	mitochondrion	16.5	19.07
AT1G64583.1	Thale cress	mitochondrion	15.7	18.95
AT1G62720.1	Thale cress	mitochondrion	14.72	18.76
AT1G62680.2	Thale cress	plastid	16.5	18.61
Bra027026.1-P	Field mustard	mitochondrion	15.7	18.55
AT5G41170.1	Thale cress	mitochondrion	15.7	18.41
AT1G62914.1	Thale cress	mitochondrion	15.7	18.37
AT1G64580.1	Thale cress	mitochondrion	15.53	18.36
Bra026401.1-P	Field mustard	plastid	15.7	18.13
AT1G06580.1	Thale cress	mitochondrion	14.24	17.6
KRH09085	Soybean	mitochondrion	19.74	17.33
AT1G64100.2	Thale cress	cytosol	22.49	17.25
KRH12873	Soybean	cytosol	19.26	17.1
Bra027656.1-P	Field mustard	cytosol	24.11	15.83
Bra027726.1-P	Field mustard	mitochondrion	11.81	15.5
AT4G26800.2	Thale cress	mitochondrion, plastid	12.62	15.18
KRH39064	Soybean	cytosol	23.14	14.76
Bra016758.1-P	Field mustard	plastid	20.23	10.79
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	2.27	6.14
TraesCS1D01G056600.1	Wheat	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1D01G055300.1	EnsemblPlantsGene:TraesCS1D01G055300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1D:-:36615763..36617619

Molecular Weight (calculated)

68424.4 Da

IEP (calculated)

7.000

GRAVY (calculated)

-0.047

Length

618 amino acids

Sequence
(BLAST)

001: MSQRALDLLQ MMAKEGGGCS PNVVAYSTVI RGFFKEGETG KACNLFHEMM QQGVEPSVWT YSSIIDALCK ARAMDKAELV LQQMVNKGVQ PNNVTYNCMI
101: HGYSTSGQSK EAAKLLREMK SRDLIPDIVT RNSFLASLCK HGRSKEAAEF LDSMTAKGHK PDIVSYRILL HGYASEGCFA DMIDLFNSME SNGIAADCHV
201: FNILINGYAK RGMTEEAMLI FTEMRGQGVS PDVVTYSIVI AALSRMGRLT DAIEKFNEMT ALEVQPDTTV YHSLIQGCCI DGDLVKAKEL MFEMMNGGIP
301: RPNIVFFNSV INSLCKEGRV MDAHDVLDLV IGIGERPDVI TFNSLIDGYC LVGKTDKAFK ILDVMKSVGV ESDVVTYSAL LDGYFKNRRI DDALTLFREM
401: PRKRIKPGTV TYGIMLDGLF RAGRTVAAKK MFHEMNESGT TVDISTYNII LGGLCRNKCA DEAITLFQKL RAMNVKLNIK ILNTMINAMY TVQRKEEAKD
501: LFSAMSANGL VPNESTYAVM IRNLLKDGAV EDADNMFSSM DNSGIIPSSC LINDIIRMLL EKGEIAKAGN YLSKVDGKRI SLEASTTSLM LSLFSRKGKH
601: QEDIKLLPAK YQFFDGFG

Best Arabidopsis Sequence Match ( AT1G63080.1 )
(BLAST)

001: MSLAKRFVHL RKASPSFCLR GIYFSGLSYD GYREKLSRNA LLHLKLDEAV DLFGEMVKSR PFPSIVEFSK LLSAIAKMKK FDLVISFGEK MEILGVSHNL
101: YTYNIMINCL CRRSQLSFAL AILGKMMKLG YGPSIVTLNS LLNGFCHGNR ISEAVALVDQ MVEMGYQPDT VTFTTLVHGL FQHNKASEAV ALVERMVVKG
201: CQPDLVTYGA VINGLCKRGE PDLALNLLNK MEKGKIEADV VIYSTVIDSL CKYRHVDDAL NLFTEMDNKG IRPDVFTYSS LISCLCNYGR WSDASRLLSD
301: MLERKINPNV VTFNSLIDAF AKEGKLIEAE KLFDEMIQRS IDPNIVTYNS LINGFCMHDR LDEAQQIFTL MVSKDCLPDV VTYNTLINGF CKAKKVVDGM
401: ELFRDMSRRG LVGNTVTYTT LIHGFFQASD CDNAQMVFKQ MVSDGVHPNI MTYNTLLDGL CKNGKLEKAM VVFEYLQKSK MEPDIYTYNI MSEGMCKAGK
501: VEDGWDLFCS LSLKGVKPDV IAYNTMISGF CKKGLKEEAY TLFIKMKEDG PLPDSGTYNT LIRAHLRDGD KAASAELIKE MRSCRFAGDA STYGLVTDML
601: HDGRLDKGFL EVLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g63080, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.