Factsheet for TraesCS1D01G056600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	68.32	60.53
TraesCS1D01G068600.1	Wheat	plastid	66.83	39.71
TraesCS1D01G057800.1	Wheat	mitochondrion	68.32	38.02
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	55.94	33.04
TraesCS1D01G058500.1	Wheat	plastid	71.78	25.44
TraesCS1D01G069100.1	Wheat	mitochondrion	67.33	21.15
TraesCS7D01G231400.1	Wheat	cytosol, plastid	41.09	20.6
TraesCS1D01G076900.1	Wheat	plastid	64.85	19.94
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	43.56	18.3
TraesCS6D01G083400.1	Wheat	mitochondrion	44.55	18.26
TraesCS1D01G056200.1	Wheat	mitochondrion	73.76	18.06
TraesCS1D01G068900.1	Wheat	mitochondrion	72.28	17.96
TraesCS6D01G290900.1	Wheat	mitochondrion	64.85	17.87
Os04t0349600-01	Rice	plastid	33.17	17.31
TraesCS1D01G068400.1	Wheat	mitochondrion	69.31	17.01
TraesCS6D01G083100.1	Wheat	cytosol	41.09	16.94
TraesCS1D01G068800.1	Wheat	plastid	66.83	16.54
TraesCS1D01G068500.1	Wheat	mitochondrion	65.35	16.26
TraesCS6D01G083300.1	Wheat	mitochondrion	35.64	16.14
KXG28799	Sorghum	plastid	56.93	15.13
TraesCS1D01G058000.1	Wheat	cytosol	30.2	15.02
TraesCS6D01G076500.1	Wheat	plastid	32.67	14.57
Zm00001d007555_P001	Maize	plastid	56.44	14.0
Zm00001d007531_P001	Maize	plastid	55.94	13.88
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	53.96	13.85
TraesCS2D01G532600.1	Wheat	plastid	52.97	13.79
Zm00001d007548_P001	Maize	plastid	55.45	13.76
Zm00001d007559_P001	Maize	plastid	55.45	13.71
Zm00001d007534_P001	Maize	plastid	52.48	13.64
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	53.47	13.64
TraesCS2D01G532300.1	Wheat	plastid	51.98	13.5
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	37.62	9.92
TraesCS6D01G047700.1	Wheat	mitochondrion	32.67	9.55
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	32.18	9.09
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	28.22	8.18
AT1G62914.1	Thale cress	mitochondrion	21.29	8.14
TraesCS1D01G076500.1	Wheat	mitochondrion	26.73	8.13
AT1G63400.1	Thale cress	cytosol, plastid	22.28	7.8
KRH40513	Soybean	plastid	13.37	7.69
AT5G16640.1	Thale cress	mitochondrion	18.81	7.54
Bra021192.1-P	Field mustard	plastid	18.81	7.54
Bra036651.1-P	Field mustard	mitochondrion	19.8	7.48
AT4G26800.2	Thale cress	mitochondrion, plastid	18.81	7.39
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	24.26	7.28
AT1G64580.1	Thale cress	mitochondrion	18.81	7.27
Bra027026.1-P	Field mustard	mitochondrion	18.81	7.27
KRH09084	Soybean	plastid	17.82	7.05
Bra027726.1-P	Field mustard	mitochondrion	16.34	7.01
AT1G63130.1	Thale cress	mitochondrion	21.78	6.98
Bra026401.1-P	Field mustard	plastid	18.32	6.92
Bra026958.1-P	Field mustard	mitochondrion	21.78	6.91
KRH08628	Soybean	plastid	18.81	6.88
AT1G62930.1	Thale cress	plastid	21.29	6.84
Bra026971.1-P	Field mustard	mitochondrion	21.29	6.84
KRH09154	Soybean	mitochondrion	18.81	6.83
AT1G62720.1	Thale cress	mitochondrion	16.34	6.8
KRH17148	Soybean	mitochondrion	18.32	6.79
AT1G62590.1	Thale cress	mitochondrion	21.29	6.78
KRH08639	Soybean	mitochondrion, plastid	18.81	6.73
TraesCS2D01G532400.1	Wheat	cytosol	20.3	6.71
Bra028267.1-P	Field mustard	mitochondrion	20.79	6.71
KRH08277	Soybean	plastid	18.81	6.7
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.29	6.68
AT1G62670.1	Thale cress	mitochondrion	20.79	6.67
TraesCS2D01G532100.1	Wheat	mitochondrion	22.77	6.65
KRH48615	Soybean	mitochondrion	17.82	6.61
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.3	6.6
AT1G06580.1	Thale cress	mitochondrion	16.34	6.6
AT1G12300.1	Thale cress	mitochondrion	20.79	6.59
TraesCS2D01G532500.1	Wheat	plastid	21.78	6.47
Bra026954.1-P	Field mustard	mitochondrion	20.79	6.46
AT1G64583.1	Thale cress	mitochondrion	16.34	6.45
VIT_14s0030g02280.t01	Wine grape	plastid	17.82	6.42
AT1G62680.2	Thale cress	plastid	17.33	6.39
AT1G63080.3	Thale cress	mitochondrion	19.31	6.35
KRH09097	Soybean	plastid	18.32	6.35
AT3G16710.1	Thale cress	mitochondrion	15.84	6.31
VIT_12s0028g02320.t01	Wine grape	mitochondrion	14.85	6.29
AT1G63070.1	Thale cress	mitochondrion	18.32	6.27
AT1G63330.2	Thale cress	cytosol	17.33	6.26
Bra016762.1-P	Field mustard	mitochondrion	18.81	6.26
Os04t0351333-00	Rice	cytosol	27.23	6.26
KRH08625	Soybean	plastid	17.82	6.25
KRH39112	Soybean	cytosol	15.35	6.24
KRH39050	Soybean	mitochondrion	16.34	6.2
AT1G63150.1	Thale cress	mitochondrion	19.31	6.2
AT1G62910.1	Thale cress	mitochondrion	19.31	6.17
KRH08671	Soybean	cytosol, mitochondrion	16.83	6.15
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	15.84	6.1
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	19.8	6.07
KRH39004	Soybean	cytosol	14.85	6.04
KRH39054	Soybean	cytosol	14.85	6.04
KRH39057	Soybean	cytosol	14.85	6.04
VIT_14s0081g00270.t01	Wine grape	plastid	17.33	6.03
VIT_14s0081g00120.t01	Wine grape	plastid	17.33	6.0
Bra026882.1-P	Field mustard	cytosol	15.84	5.99
KRH09121	Soybean	mitochondrion	15.84	5.99
KRH09095	Soybean	plastid	17.33	5.98
KRH08636	Soybean	cytosol	15.35	5.94
KRH40400	Soybean	plastid	16.83	5.89
Bra025516.1-P	Field mustard	cytosol, mitochondrion	13.86	5.87
KRH39074	Soybean	cytosol	14.36	5.84
AT3G22470.1	Thale cress	cytosol, mitochondrion	17.82	5.82
KRH39066	Soybean	cytosol	15.84	5.77
KRH41817	Soybean	mitochondrion	15.84	5.77
AT5G41170.1	Thale cress	mitochondrion	14.85	5.69
AT1G12700.2	Thale cress	cytosol	17.33	5.66
KRH39072	Soybean	cytosol	13.86	5.65
KRH31646	Soybean	cytosol	14.36	5.6
PGSC0003DMT400056663	Potato	plastid	15.84	5.44
PGSC0003DMT400053185	Potato	mitochondrion	15.84	5.42
Bra036649.1-P	Field mustard	cytosol	10.4	5.37
VIT_14s0081g00280.t01	Wine grape	mitochondrion	16.83	5.32
Bra026957.1-P	Field mustard	mitochondrion	15.84	5.31
KRH09085	Soybean	mitochondrion	18.32	5.26
PGSC0003DMT400053556	Potato	mitochondrion	11.88	5.23
KRH08607	Soybean	cytosol	14.36	5.17
AT1G64100.2	Thale cress	cytosol	19.8	4.96
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	12.38	4.95
PGSC0003DMT400008760	Potato	mitochondrion	14.36	4.95
PGSC0003DMT400056665	Potato	mitochondrion	14.36	4.92
Solyc06g007740.1.1	Tomato	cytosol	14.36	4.92
Solyc04g080120.1.1	Tomato	extracellular	14.85	4.9
PGSC0003DMT400015293	Potato	mitochondrion	14.36	4.75
PGSC0003DMT400015298	Potato	mitochondrion	14.36	4.75
Solyc06g007300.1.1	Tomato	extracellular	13.86	4.73
Bra026836.1-P	Field mustard	cytosol, mitochondrion	11.39	4.68
PGSC0003DMT400053182	Potato	cytosol	13.86	4.67
Bra027658.1-P	Field mustard	cytosol, mitochondrion	12.38	4.6
PGSC0003DMT400025074	Potato	cytosol	11.88	4.35
KRH08599	Soybean	cytosol, plastid	14.36	4.33
KRH25652	Soybean	cytosol, golgi	11.39	4.26
PGSC0003DMT400052971	Potato	mitochondrion	12.38	4.22
TraesCS1D01G076400.1	Wheat	cytosol	7.43	4.13
KRH39064	Soybean	cytosol	18.81	3.92
PGSC0003DMT400008757	Potato	cytosol	9.41	3.82
Bra031731.1-P	Field mustard	mitochondrion	9.41	3.74
Bra027656.1-P	Field mustard	cytosol	16.83	3.61
Bra016758.1-P	Field mustard	plastid	18.81	3.28
Solyc06g007280.2.1	Tomato	cytosol	3.96	3.14
TraesCS1B01G072700.1	Wheat	cytosol	7.92	3.14
Bra006187.1-P	Field mustard	plastid	4.46	3.09
KRH12873	Soybean	cytosol	9.41	2.73
PGSC0003DMT400025087	Potato	endoplasmic reticulum	5.94	2.42
VIT_14s0081g00110.t01	Wine grape	cytosol	5.45	2.24
PGSC0003DMT400025067	Potato	cytosol	3.96	1.68
TraesCS6D01G017700.1	Wheat	plastid	3.96	1.5
Bra027636.1-P	Field mustard	cytosol	0.99	0.62
Solyc06g005220.2.1	Tomato	cytosol	0.99	0.49
Bra026884.1-P	Field mustard	cytosol	0.99	0.44
KRH09082	Soybean	cytosol	0.5	0.25
Bra027029.1-P	Field mustard	mitochondrion	0.0	0.0
CDX68679	Canola	cytosol	0.0	0.0
KXG35774	Sorghum	cytosol, mitochondrion	0.0	0.0
PGSC0003DMT400008759	Potato	cytosol	0.0	0.0
PGSC0003DMT400052977	Potato	cytosol	0.0	0.0
Solyc06g007810.1.1	Tomato	cytosol	0.0	0.0
TraesCS1D01G033000.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G055300.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G056700.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G057700.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G058400.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G067600.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G068700.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G076700.1	Wheat	cytosol	0.0	0.0
TraesCS2D01G532200.1	Wheat	cytosol	0.0	0.0
TraesCS6D01G017800.1	Wheat	cytosol	0.0	0.0
VIT_14s0030g02260.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1D01G056600.1	EnsemblPlantsGene:TraesCS1D01G056600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1D:+:37442733..37446564

Molecular Weight (calculated)

22156.0 Da

IEP (calculated)

9.078

GRAVY (calculated)

0.060

Length

202 amino acids

Sequence
(BLAST)

001: MSRRYTITLI SRLRVPRRCS SSTSISPPSR SWSPRDAFAA ATERVRAGTL SPEDAHNLFD ELLRQGTPVP ERSLNGFLAA LTRATSSNAC IKDGPALALA
101: LFTRGCREEA GPQVAVPTVW TYNILMDCCC RARRPDLGLA LFGCILRTGL KIDQITANTL LKCLCYAKRT EEAVYVLLHS MSKLGCVPDA FAYNIVLKSL
201: CV

Best Arabidopsis Sequence Match ( AT1G12700.1 )
(BLAST)

001: MMIKRSITTN MKALRLIQPH LLKTGSLRTD LLCTISSFFS SCERDFSSIS NGNVCFRERL RSGIVDIKKD DAIALFQEMI RSRPLPSLVD FSRFFSAIAR
101: TKQFNLVLDF CKQLELNGIA HNIYTLNIMI NCFCRCCKTC FAYSVLGKVM KLGYEPDTTT FNTLIKGLFL EGKVSEAVVL VDRMVENGCQ PDVVTYNSIV
201: NGICRSGDTS LALDLLRKME ERNVKADVFT YSTIIDSLCR DGCIDAAISL FKEMETKGIK SSVVTYNSLV RGLCKAGKWN DGALLLKDMV SREIVPNVIT
301: FNVLLDVFVK EGKLQEANEL YKEMITRGIS PNIITYNTLM DGYCMQNRLS EANNMLDLMV RNKCSPDIVT FTSLIKGYCM VKRVDDGMKV FRNISKRGLV
401: ANAVTYSILV QGFCQSGKIK LAEELFQEMV SHGVLPDVMT YGILLDGLCD NGKLEKALEI FEDLQKSKMD LGIVMYTTII EGMCKGGKVE DAWNLFCSLP
501: CKGVKPNVMT YTVMISGLCK KGSLSEANIL LRKMEEDGNA PNDCTYNTLI RAHLRDGDLT ASAKLIEEMK SCGFSADASS IKMVIDMLLS GELDKSFLDM
601: LS

Arabidopsis Description

ATP binding;nucleic acid binding;helicases [Source:TAIR;Acc:AT1G12700]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.