Factsheet for TraesCS1B01G072700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G056700.1	Wheat	cytosol	74.9	62.93
TraesCS2B01G126900.1	Wheat	cytosol	42.94	57.33
TraesCS1B01G073100.1	Wheat	cytosol	67.65	56.93
TraesCS1B01G072400.1	Wheat	cytosol	67.84	49.78
TraesCS6B01G127200.1	Wheat	cytosol	33.53	49.71
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	64.51	49.55
TraesCS1B01G075300.1	Wheat	cytosol	57.45	49.08
TraesCS1B01G085400.1	Wheat	cytosol	56.08	44.62
TraesCS1B01G073200.1	Wheat	cytosol	25.29	42.57
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	64.31	42.05
TraesCS1B01G072300.1	Wheat	plastid	46.67	41.9
TraesCS1B01G092600.1	Wheat	plastid	41.96	41.39
TraesCS1B01G038400.1	Wheat	cytosol	49.02	41.12
TraesCS1B01G039700.1	Wheat	cytosol	48.82	40.95
TraesCS1B01G086000.1	Wheat	plastid	54.71	40.67
TraesCS1B01G092500.1	Wheat	mitochondrion	61.18	39.85
TraesCS1B01G085900.1	Wheat	mitochondrion	63.33	39.68
TraesCS1B01G071600.1	Wheat	mitochondrion	65.88	39.62
TraesCS7B01G469500.1	Wheat	cytosol	42.94	38.97
TraesCS1B01G072900.2	Wheat	mitochondrion	66.67	38.95
TraesCS1B01G084800.1	Wheat	cytosol	34.9	38.36
TraesCS1B01G085300.1	Wheat	mitochondrion	58.43	37.63
TraesCS1B01G038200.1	Wheat	mitochondrion	46.67	37.6
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	36.47	36.83
TraesCS2B01G560300.1	Wheat	cytosol	40.98	36.73
TraesCS2B01G559900.1	Wheat	cytosol	38.43	36.16
TraesCS6B01G127500.1	Wheat	cytosol	33.53	34.9
KXG35774	Sorghum	cytosol, mitochondrion	32.16	34.67
TraesCS6B01G341800.2	Wheat	cytosol	26.47	33.83
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	28.63	33.72
TraesCS6B01G114300.1	Wheat	cytosol	25.69	33.68
TraesCS1B01G038500.1	Wheat	mitochondrion	50.59	32.66
TraesCS1B01G039200.1	Wheat	mitochondrion	49.61	32.27
TraesCS1B01G039100.1	Wheat	mitochondrion	49.02	31.93
Zm00001d007548_P001	Maize	plastid	50.2	31.45
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	27.06	31.44
Zm00001d007559_P001	Maize	plastid	50.2	31.33
Zm00001d007531_P001	Maize	plastid	50.0	31.33
TraesCS6B01G021600.1	Wheat	mitochondrion	43.73	31.15
Zm00001d007555_P001	Maize	plastid	49.41	30.96
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	46.47	30.94
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	43.33	30.91
TraesCS2B01G560700.1	Wheat	plastid	46.67	30.87
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	42.75	30.49
Zm00001d007534_P001	Maize	plastid	46.27	30.37
KXG28799	Sorghum	plastid	44.9	30.13
Solyc06g007280.2.1	Tomato	cytosol	14.9	29.8
Bra027636.1-P	Field mustard	cytosol	18.04	28.4
TraesCS1B01G038600.1	Wheat	cytosol	19.61	27.55
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	17.25	27.08
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	19.8	26.65
KRH39054	Soybean	cytosol	25.49	26.16
Solyc06g005220.2.1	Tomato	cytosol	20.59	25.86
KRH09082	Soybean	cytosol	20.59	25.74
TraesCS1B01G315500.1	Wheat	mitochondrion	16.08	25.55
Os04t0351333-00	Rice	cytosol	43.92	25.48
VIT_12s0028g02320.t01	Wine grape	mitochondrion	23.73	25.37
KRH39004	Soybean	cytosol	24.71	25.35
KRH39057	Soybean	cytosol	24.71	25.35
Os04t0349600-01	Rice	plastid	19.22	25.32
KRH39074	Soybean	cytosol	24.51	25.15
Bra027029.1-P	Field mustard	mitochondrion	11.96	25.1
Bra026884.1-P	Field mustard	cytosol	22.55	25.05
VIT_14s0081g00110.t01	Wine grape	cytosol	24.12	25.05
KRH39072	Soybean	cytosol	23.92	24.6
PGSC0003DMT400052977	Potato	cytosol	18.63	24.42
KRH39112	Soybean	cytosol	23.73	24.35
Bra006187.1-P	Field mustard	plastid	13.73	24.05
Bra036649.1-P	Field mustard	cytosol	18.24	23.79
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	23.53	23.76
KRH40513	Soybean	plastid	16.27	23.65
PGSC0003DMT400008759	Potato	cytosol	14.31	22.88
KRH08607	Soybean	cytosol	25.1	22.82
Solyc06g007810.1.1	Tomato	cytosol	11.96	22.76
KRH09084	Soybean	plastid	22.55	22.5
KRH08636	Soybean	cytosol	22.94	22.41
KRH25652	Soybean	cytosol, golgi	23.33	22.04
KRH39066	Soybean	cytosol	23.92	21.98
KRH17148	Soybean	mitochondrion	23.33	21.83
AT5G16640.1	Thale cress	mitochondrion	21.57	21.83
KRH08639	Soybean	mitochondrion, plastid	24.12	21.77
KRH08628	Soybean	plastid	23.53	21.74
KRH09121	Soybean	mitochondrion	22.55	21.54
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	22.16	21.52
KRH08671	Soybean	cytosol, mitochondrion	23.33	21.52
KRH39050	Soybean	mitochondrion	22.35	21.43
PGSC0003DMT400025067	Potato	cytosol	20.0	21.43
PGSC0003DMT400025087	Potato	endoplasmic reticulum	20.78	21.41
KRH08277	Soybean	plastid	23.73	21.34
AT1G63330.2	Thale cress	cytosol	23.33	21.29
KRH08625	Soybean	plastid	23.73	21.01
KRH48615	Soybean	mitochondrion	22.35	20.92
KRH09154	Soybean	mitochondrion	22.75	20.86
KRH40400	Soybean	plastid	23.53	20.8
KRH41817	Soybean	mitochondrion	22.55	20.72
Bra031731.1-P	Field mustard	mitochondrion	20.59	20.67
AT1G63400.1	Thale cress	cytosol, plastid	23.33	20.62
Bra026882.1-P	Field mustard	cytosol	21.57	20.6
Bra025516.1-P	Field mustard	cytosol, mitochondrion	19.22	20.55
PGSC0003DMT400008757	Potato	cytosol	20.0	20.48
VIT_14s0081g00120.t01	Wine grape	plastid	23.33	20.41
PGSC0003DMT400025074	Potato	cytosol	21.96	20.29
AT1G63080.3	Thale cress	mitochondrion	24.31	20.2
AT3G16710.1	Thale cress	mitochondrion	20.0	20.12
AT1G12620.1	Thale cress	cytosol, mitochondrion	24.31	19.97
VIT_14s0030g02280.t01	Wine grape	plastid	21.96	19.96
AT1G12300.1	Thale cress	mitochondrion	24.9	19.94
Bra027658.1-P	Field mustard	cytosol, mitochondrion	21.18	19.89
AT3G22470.1	Thale cress	cytosol, mitochondrion	23.92	19.71
VIT_14s0081g00270.t01	Wine grape	plastid	22.35	19.66
AT1G62670.1	Thale cress	mitochondrion	24.12	19.52
PGSC0003DMT400053185	Potato	mitochondrion	22.55	19.49
Solyc06g007740.1.1	Tomato	cytosol	22.55	19.49
KRH09095	Soybean	plastid	22.35	19.49
Bra021192.1-P	Field mustard	plastid	19.22	19.44
KRH09097	Soybean	plastid	22.16	19.38
Bra016762.1-P	Field mustard	mitochondrion	22.94	19.28
Bra026971.1-P	Field mustard	mitochondrion	23.73	19.24
TraesCS1B01G038300.1	Wheat	plastid	20.59	19.23
AT1G62720.1	Thale cress	mitochondrion	18.24	19.18
Bra026958.1-P	Field mustard	mitochondrion	23.92	19.15
VIT_14s0081g00280.t01	Wine grape	mitochondrion	23.92	19.09
Bra036651.1-P	Field mustard	mitochondrion	20.0	19.07
PGSC0003DMT400056665	Potato	mitochondrion	21.96	19.02
AT5G41170.1	Thale cress	mitochondrion	19.61	18.98
Solyc04g080120.1.1	Tomato	extracellular	22.75	18.95
AT1G62590.1	Thale cress	mitochondrion	23.33	18.77
AT1G62914.1	Thale cress	mitochondrion	19.41	18.75
AT1G64583.1	Thale cress	mitochondrion	18.82	18.75
Bra026836.1-P	Field mustard	cytosol, mitochondrion	18.04	18.74
AT1G63130.1	Thale cress	mitochondrion	23.14	18.73
Bra028267.1-P	Field mustard	mitochondrion	22.94	18.69
PGSC0003DMT400015293	Potato	mitochondrion	22.16	18.52
PGSC0003DMT400015298	Potato	mitochondrion	22.16	18.52
AT1G62910.1	Thale cress	mitochondrion	22.94	18.51
VIT_14s0030g02260.t01	Wine grape	cytosol	16.08	18.51
AT1G63070.1	Thale cress	mitochondrion	21.37	18.47
AT1G06580.1	Thale cress	mitochondrion	18.04	18.4
KRH08599	Soybean	cytosol, plastid	24.12	18.39
KRH31646	Soybean	cytosol	18.63	18.34
AT1G12775.1	Thale cress	cytosol, mitochondrion	23.14	18.32
PGSC0003DMT400053556	Potato	mitochondrion	16.47	18.3
AT1G62930.1	Thale cress	plastid	22.55	18.28
Solyc06g007300.1.1	Tomato	extracellular	21.18	18.24
AT1G64580.1	Thale cress	mitochondrion	18.63	18.16
PGSC0003DMT400008760	Potato	mitochondrion	20.78	18.09
PGSC0003DMT400052971	Potato	mitochondrion	20.98	18.04
PGSC0003DMT400056663	Potato	plastid	20.78	18.03
AT1G63150.1	Thale cress	mitochondrion	22.16	17.96
AT1G62680.2	Thale cress	plastid	19.22	17.88
Bra026954.1-P	Field mustard	mitochondrion	22.75	17.85
Bra027026.1-P	Field mustard	mitochondrion	18.24	17.78
Bra026957.1-P	Field mustard	mitochondrion	20.78	17.58
PGSC0003DMT400053182	Potato	cytosol	20.59	17.53
AT1G12700.2	Thale cress	cytosol	20.98	17.31
CDX68679	Canola	cytosol	3.73	16.52
AT1G64100.2	Thale cress	cytosol	25.88	16.38
KRH09085	Soybean	mitochondrion	22.55	16.34
AT4G26800.2	Thale cress	mitochondrion, plastid	15.88	15.76
TraesCS6B01G129100.1	Wheat	cytosol, plastid	8.82	15.62
Bra026401.1-P	Field mustard	plastid	16.27	15.51
Bra027726.1-P	Field mustard	mitochondrion	14.12	15.29
Bra027656.1-P	Field mustard	cytosol	27.65	14.98
KRH12873	Soybean	cytosol	20.0	14.66
KRH39064	Soybean	cytosol	25.49	13.42
Bra016758.1-P	Field mustard	plastid	22.94	10.09
TraesCS1D01G056600.1	Wheat	mitochondrion	3.14	7.92

Protein Annotations

EnsemblPlants:TraesCS1B01G072700.1	EnsemblPlantsGene:TraesCS1B01G072700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:57104191..57105723

Molecular Weight (calculated)

57324.1 Da

IEP (calculated)

7.189

GRAVY (calculated)

-0.014

Length

510 amino acids

Sequence
(BLAST)

001: MMSELGCVPN AFSYSIVLKG LCDNSMCQRA LELLQMLVEK EGACSLNVVA YSTVIHGFFK EGETSKACNL FDEMIQQGIV PDVVTYSSII DALCKARAMD
101: KSELVLRQMV ANGAQPNEVT YNCMIHGYST SGRWKEAVKL FREMKSRGLI PDIFTCNSLM TYHCKHGRSK EAAEFFYSMT AKGHKPDIVS YRILLHGYAT
201: EGCFPDMIDV FNSMENNGIA ADCHVFNILI DAYSKRGMMD ETMLITSKMQ ERRVNPDIVT YSSIIAGLSR LGRLTEAMEK FNQMIALGVQ PNKVVYHALI
301: QGFCIDGDLA KAKQLVSEMM NRGIPRPNIS FFSSVIKSLC QEGRVMDAHD IFDLVIDMGE RPDDILLNSL IDGYCLVGKM DKALKVLDVM ESVGVEPDVI
401: TYNTLVNGYC RNGRINDGLT LFRDMARKRI KPDTVFILRH NGWVVSFWEI CFCYGAARRR AREGRPGAFL PTAGQEGRDF LLNSCLIRLI HLLSLYREVY
501: LTPKQGLLDP

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.