Factsheet for TraesCS2B01G560300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G559900.1	Wheat	cytosol	85.94	90.22
TraesCS7B01G469500.1	Wheat	cytosol	74.87	75.8
TraesCS2A01G531000.1	Wheat	golgi	88.22	73.93
TraesCS2B01G560700.1	Wheat	plastid	89.28	65.89
TraesCS1B01G038600.1	Wheat	cytosol	34.09	53.44
TraesCS1B01G039700.1	Wheat	cytosol	56.24	52.63
TraesCS1B01G075300.1	Wheat	cytosol	55.01	52.43
TraesCS6B01G341800.2	Wheat	cytosol	36.56	52.13
TraesCS1B01G084800.1	Wheat	cytosol	42.0	51.51
TraesCS1B01G038400.1	Wheat	cytosol	54.83	51.32
TraesCS1B01G085400.1	Wheat	cytosol	57.29	50.86
TraesCS1B01G073100.1	Wheat	cytosol	53.95	50.66
TraesCS2B01G126900.1	Wheat	cytosol	32.51	48.43
TraesCS1B01G072400.1	Wheat	cytosol	54.66	44.75
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	48.51	41.57
TraesCS1B01G072700.1	Wheat	cytosol	36.73	40.98
TraesCS6B01G114300.1	Wheat	cytosol	27.42	40.1
TraesCS1B01G085300.1	Wheat	mitochondrion	55.54	39.9
TraesCS1B01G039100.1	Wheat	mitochondrion	54.66	39.72
TraesCS1B01G038500.1	Wheat	mitochondrion	55.01	39.62
TraesCS1B01G085900.1	Wheat	mitochondrion	56.59	39.56
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	30.05	38.95
TraesCS1B01G039200.1	Wheat	mitochondrion	53.43	38.78
TraesCS6B01G127200.1	Wheat	cytosol	23.02	38.08
TraesCS1B01G092500.1	Wheat	mitochondrion	51.49	37.42
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	50.09	36.54
TraesCS1B01G038300.1	Wheat	plastid	34.62	36.08
TraesCS1B01G072900.2	Wheat	mitochondrion	55.18	35.97
TraesCS1B01G038200.1	Wheat	mitochondrion	38.14	34.28
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	42.53	33.85
TraesCS6B01G021600.1	Wheat	mitochondrion	42.35	33.66
TraesCS1B01G086000.1	Wheat	plastid	40.42	33.53
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	41.48	33.01
TraesCS1B01G071600.1	Wheat	mitochondrion	47.8	32.08
TraesCS1B01G073200.1	Wheat	cytosol	16.17	30.36
PGSC0003DMT400052977	Potato	cytosol	19.86	29.05
Bra027636.1-P	Field mustard	cytosol	15.64	27.47
TraesCS6B01G127500.1	Wheat	cytosol	23.55	27.35
PGSC0003DMT400008759	Potato	cytosol	15.29	27.27
Solyc06g007810.1.1	Tomato	cytosol	12.83	27.24
CDX68679	Canola	cytosol	5.45	26.96
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	23.9	26.93
Solyc06g007280.2.1	Tomato	cytosol	11.95	26.67
Solyc06g005220.2.1	Tomato	cytosol	18.63	26.11
TraesCS1B01G072300.1	Wheat	plastid	26.01	26.06
TraesCS1B01G092600.1	Wheat	plastid	23.55	25.92
VIT_14s0081g00110.t01	Wine grape	cytosol	21.97	25.46
KRH09082	Soybean	cytosol	18.1	25.25
Bra027029.1-P	Field mustard	mitochondrion	10.72	25.1
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	18.63	24.48
PGSC0003DMT400025067	Potato	cytosol	20.04	23.95
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.04	23.9
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.74	23.37
KRH39112	Soybean	cytosol	20.39	23.34
Bra006187.1-P	Field mustard	plastid	11.78	23.02
KRH39074	Soybean	cytosol	20.04	22.94
KRH39054	Soybean	cytosol	19.86	22.74
KRH39057	Soybean	cytosol	19.86	22.74
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.68	22.63
KRH39004	Soybean	cytosol	19.51	22.33
Bra026884.1-P	Field mustard	cytosol	17.93	22.22
KRH39072	Soybean	cytosol	19.16	21.98
KRH08636	Soybean	cytosol	20.04	21.84
Bra036649.1-P	Field mustard	cytosol	14.94	21.74
KRH40513	Soybean	plastid	13.36	21.65
KRH08628	Soybean	plastid	20.56	21.2
VIT_14s0081g00120.t01	Wine grape	plastid	21.62	21.1
VIT_14s0081g00270.t01	Wine grape	plastid	21.44	21.03
KRH25652	Soybean	cytosol, golgi	19.68	20.74
KRH08607	Soybean	cytosol	20.39	20.68
KRH08277	Soybean	plastid	20.56	20.63
KRH17148	Soybean	mitochondrion	19.68	20.55
KRH48615	Soybean	mitochondrion	19.68	20.55
KRH31646	Soybean	cytosol	18.63	20.46
Bra026882.1-P	Field mustard	cytosol	19.16	20.41
VIT_14s0030g02260.t01	Wine grape	cytosol	15.82	20.32
KRH39050	Soybean	mitochondrion	18.98	20.3
KRH40400	Soybean	plastid	20.56	20.28
KRH08671	Soybean	cytosol, mitochondrion	19.68	20.25
AT5G16640.1	Thale cress	mitochondrion	17.93	20.24
PGSC0003DMT400008757	Potato	cytosol	17.57	20.08
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.45	20.0
KRH08639	Soybean	mitochondrion, plastid	19.86	20.0
KRH39066	Soybean	cytosol	19.51	20.0
KRH08625	Soybean	plastid	20.21	19.97
KRH09084	Soybean	plastid	17.93	19.96
PGSC0003DMT400025074	Potato	cytosol	19.16	19.75
PGSC0003DMT400053185	Potato	mitochondrion	20.39	19.66
KRH09154	Soybean	mitochondrion	19.16	19.6
KRH41817	Soybean	mitochondrion	18.98	19.46
AT1G64583.1	Thale cress	mitochondrion	17.4	19.34
Bra031731.1-P	Field mustard	mitochondrion	17.22	19.29
KRH09121	Soybean	mitochondrion	18.1	19.29
Solyc06g007740.1.1	Tomato	cytosol	19.86	19.15
Solyc06g007300.1.1	Tomato	extracellular	19.86	19.09
PGSC0003DMT400052971	Potato	mitochondrion	19.68	18.89
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.82	18.87
PGSC0003DMT400056665	Potato	mitochondrion	19.51	18.85
AT3G16710.1	Thale cress	mitochondrion	16.7	18.74
VIT_14s0030g02280.t01	Wine grape	plastid	18.45	18.72
PGSC0003DMT400015293	Potato	mitochondrion	20.04	18.69
PGSC0003DMT400015298	Potato	mitochondrion	20.04	18.69
Solyc04g080120.1.1	Tomato	extracellular	20.04	18.63
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.91	18.62
AT1G06580.1	Thale cress	mitochondrion	16.34	18.6
Bra021192.1-P	Field mustard	plastid	16.34	18.45
AT1G62680.2	Thale cress	plastid	17.75	18.43
Bra036651.1-P	Field mustard	mitochondrion	17.05	18.13
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	11.95	17.94
KRH09097	Soybean	plastid	18.28	17.84
Bra027026.1-P	Field mustard	mitochondrion	16.34	17.78
KRH09095	Soybean	plastid	18.28	17.78
AT1G62720.1	Thale cress	mitochondrion	15.11	17.73
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.33	17.71
PGSC0003DMT400056663	Potato	plastid	18.28	17.69
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.87	17.68
PGSC0003DMT400008760	Potato	mitochondrion	18.1	17.58
AT1G62670.1	Thale cress	mitochondrion	19.33	17.46
AT5G41170.1	Thale cress	mitochondrion	16.17	17.46
AT1G12300.1	Thale cress	mitochondrion	19.51	17.43
Bra026958.1-P	Field mustard	mitochondrion	19.51	17.43
PGSC0003DMT400053182	Potato	cytosol	18.28	17.36
AT1G63330.2	Thale cress	cytosol	17.05	17.35
Bra026971.1-P	Field mustard	mitochondrion	19.16	17.33
AT1G12700.2	Thale cress	cytosol	18.8	17.31
AT1G64580.1	Thale cress	mitochondrion	15.82	17.21
Bra016762.1-P	Field mustard	mitochondrion	18.28	17.13
AT3G22470.1	Thale cress	cytosol, mitochondrion	18.63	17.12
Bra026957.1-P	Field mustard	mitochondrion	18.1	17.08
AT1G62930.1	Thale cress	plastid	18.8	17.01
PGSC0003DMT400053556	Potato	mitochondrion	13.71	16.99
KRH08599	Soybean	cytosol, plastid	19.86	16.89
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	9.49	16.62
AT1G63080.3	Thale cress	mitochondrion	17.93	16.61
AT4G26800.2	Thale cress	mitochondrion, plastid	14.94	16.54
TraesCS1B01G315500.1	Wheat	mitochondrion	9.31	16.51
AT1G63130.1	Thale cress	mitochondrion	18.28	16.51
AT1G62910.1	Thale cress	mitochondrion	18.28	16.46
Bra028267.1-P	Field mustard	mitochondrion	18.1	16.45
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.06	16.29
Bra026954.1-P	Field mustard	mitochondrion	18.28	16.0
AT1G12775.1	Thale cress	cytosol, mitochondrion	18.1	15.99
AT1G63400.1	Thale cress	cytosol, plastid	16.17	15.94
Bra026401.1-P	Field mustard	plastid	14.94	15.89
KRH12873	Soybean	cytosol	19.33	15.8
AT1G63150.1	Thale cress	mitochondrion	17.4	15.74
AT1G63070.1	Thale cress	mitochondrion	15.99	15.42
AT1G62590.1	Thale cress	mitochondrion	17.05	15.3
AT1G62914.1	Thale cress	mitochondrion	13.88	14.96
Bra027726.1-P	Field mustard	mitochondrion	12.3	14.86
KRH09085	Soybean	mitochondrion	18.28	14.77
AT1G64100.2	Thale cress	cytosol	20.39	14.39
Bra027656.1-P	Field mustard	cytosol	21.79	13.18
KRH39064	Soybean	cytosol	20.39	11.97
Bra016758.1-P	Field mustard	plastid	18.1	8.89
TraesCS6B01G129100.1	Wheat	cytosol, plastid	1.58	3.12

Protein Annotations

EnsemblPlants:TraesCS2B01G560300.1	EnsemblPlantsGene:TraesCS2B01G560300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr2B:-:753806332..753808041

Molecular Weight (calculated)

63123.6 Da

IEP (calculated)

8.343

GRAVY (calculated)

0.078

Length

569 amino acids

Sequence
(BLAST)

001: MPQLGVQPDV VTYTSIMDAL SKSGAMDKAE VLLRQMVDQG IEPNIRTYSC LIHGYSTFGQ WKEALRVFKE MASLGVVPDV VTLSSLIDSL CRHRRTKQAR
101: EIFDSMAAKG LKPNIVSYST MLNGYVKEGS FEDMTGLFNS MVRNGIVPNH HIFNILINAY AKRGLMDEAM HMFEVMRQQG VNPDVFGYQI IMDSLCKMGK
201: MDAALDKFNQ MVNQGVSPNK AVYQCLVLGS CSHGDFVKAK ELISEAVNRG LCSNSVFFYP VINDRCKEGK VKDAQDMFDF IVGIGHRPDV IMYNSLMDGY
301: CLVGKVEEAL RVLDAMKSAG LQPDVFTYGI LINGYCKIGR IDDGLSLVRE ISLSGVKPTT IMYNIILDGL FCSGRTVPAK EKFHKMNESG IPVGVGTYNI
401: VLSGLCKNNC TDEAIELFKK LRAVNVKINV ITLTTMVSAM FKTRRIEEAK DLFVTISAIG LVPSVVTYSI MMTNFIKEGL LADADDMFSA MEKAGCAHNS
501: RLLNQVVRVF LKNGEVVKAV TYLAKFDAKQ LSVEASTVSL IVSLFSRKGK LREHVKLLPV KYQPPEMLD

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.