Factsheet for TraesCS1B01G085300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G067000.1	Wheat	mitochondrion	82.95	91.76
TraesCS1B01G085400.1	Wheat	cytosol	63.51	78.47
TraesCS6B01G341800.2	Wheat	cytosol	35.98	71.43
TraesCS1B01G075300.1	Wheat	cytosol	52.53	69.68
TraesCS1B01G072400.1	Wheat	cytosol	60.23	68.63
TraesCS1B01G084800.1	Wheat	cytosol	39.65	67.67
TraesCS1B01G085900.1	Wheat	mitochondrion	69.19	67.32
HORVU1Hr1G013810.1	Barley	plastid	70.45	66.51
TraesCS1B01G073100.1	Wheat	cytosol	50.88	66.5
TraesCS1B01G092500.1	Wheat	mitochondrion	64.14	64.88
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	53.66	64.01
TraesCS1B01G086000.1	Wheat	plastid	55.3	63.85
TraesCS2B01G126900.1	Wheat	cytosol	30.56	63.35
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	61.24	62.18
TraesCS1B01G073200.1	Wheat	cytosol	23.61	61.72
TraesCS1B01G039700.1	Wheat	cytosol	46.97	61.18
TraesCS1B01G038400.1	Wheat	cytosol	46.59	60.69
TraesCS1B01G038600.1	Wheat	cytosol	27.65	60.33
TraesCS1B01G072900.2	Wheat	mitochondrion	65.66	59.56
TraesCS1B01G072700.1	Wheat	cytosol	37.63	58.43
TraesCS1B01G038500.1	Wheat	mitochondrion	57.2	57.34
TraesCS1B01G092600.1	Wheat	plastid	37.12	56.87
TraesCS1B01G039200.1	Wheat	mitochondrion	56.19	56.76
TraesCS1B01G071600.1	Wheat	mitochondrion	60.73	56.72
TraesCS1B01G039100.1	Wheat	mitochondrion	56.06	56.7
TraesCS2B01G559900.1	Wheat	cytosol	38.38	56.09
TraesCS2B01G560300.1	Wheat	cytosol	39.9	55.54
TraesCS1B01G038300.1	Wheat	plastid	37.75	54.76
TraesCS7B01G469500.1	Wheat	cytosol	38.64	54.45
TraesCS2B01G560700.1	Wheat	plastid	52.9	54.34
KXG28799	Sorghum	plastid	51.89	54.08
TraesCS6B01G127200.1	Wheat	cytosol	23.48	54.07
TraesCS1B01G072300.1	Wheat	plastid	38.26	53.35
Zm00001d007548_P001	Maize	plastid	54.67	53.19
Zm00001d007559_P001	Maize	plastid	54.8	53.12
Zm00001d007531_P001	Maize	plastid	54.55	53.07
Zm00001d007555_P001	Maize	plastid	54.55	53.07
TraesCS1B01G038200.1	Wheat	mitochondrion	42.3	52.92
Zm00001d007534_P001	Maize	plastid	51.89	52.9
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	28.91	52.16
TraesCS6B01G127500.1	Wheat	cytosol	30.93	50.0
KXG35774	Sorghum	cytosol, mitochondrion	29.8	49.89
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	31.69	49.7
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	47.22	48.83
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	26.26	48.04
TraesCS1B01G315500.1	Wheat	mitochondrion	19.32	47.66
TraesCS6B01G021600.1	Wheat	mitochondrion	39.9	44.13
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	39.77	44.06
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	39.65	43.92
Os04t0351333-00	Rice	cytosol	47.98	43.23
TraesCS6B01G114300.1	Wheat	cytosol	19.95	40.62
Os04t0349600-01	Rice	plastid	19.32	39.53
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	16.04	39.08
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	18.18	37.99
TraesCS6B01G129100.1	Wheat	cytosol, plastid	13.38	36.81
Solyc06g007280.2.1	Tomato	cytosol	10.61	32.94
KRH39054	Soybean	cytosol	20.2	32.19
KRH39057	Soybean	cytosol	20.08	31.99
KRH39112	Soybean	cytosol	20.08	31.99
KRH39004	Soybean	cytosol	19.95	31.79
VIT_14s0081g00110.t01	Wine grape	cytosol	19.44	31.36
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.69	31.03
KRH39074	Soybean	cytosol	19.44	30.99
Solyc06g005220.2.1	Tomato	cytosol	15.78	30.79
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.44	30.5
KRH08636	Soybean	cytosol	19.95	30.27
KRH39072	Soybean	cytosol	18.94	30.24
Solyc06g007810.1.1	Tomato	cytosol	10.23	30.22
PGSC0003DMT400052977	Potato	cytosol	14.65	29.82
AT1G63330.2	Thale cress	cytosol	20.58	29.16
KRH09084	Soybean	plastid	18.81	29.16
PGSC0003DMT400008759	Potato	cytosol	11.74	29.15
Bra026882.1-P	Field mustard	cytosol	19.57	29.03
Bra027636.1-P	Field mustard	cytosol	11.87	29.01
KRH08671	Soybean	cytosol, mitochondrion	20.2	28.93
KRH39066	Soybean	cytosol	20.08	28.65
KRH17148	Soybean	mitochondrion	19.7	28.62
KRH08628	Soybean	plastid	19.95	28.62
KRH08607	Soybean	cytosol	20.2	28.52
VIT_14s0081g00120.t01	Wine grape	plastid	20.71	28.13
VIT_14s0081g00270.t01	Wine grape	plastid	20.58	28.1
KRH48615	Soybean	mitochondrion	19.32	28.07
KRH08639	Soybean	mitochondrion, plastid	19.95	27.96
KRH08277	Soybean	plastid	19.82	27.69
Bra026884.1-P	Field mustard	cytosol	16.04	27.67
PGSC0003DMT400025067	Potato	cytosol	16.54	27.52
PGSC0003DMT400008757	Potato	cytosol	17.3	27.51
PGSC0003DMT400025087	Potato	endoplasmic reticulum	17.17	27.47
KRH09082	Soybean	cytosol	14.14	27.45
PGSC0003DMT400025074	Potato	cytosol	19.07	27.36
KRH25652	Soybean	cytosol, golgi	18.56	27.22
Bra027029.1-P	Field mustard	mitochondrion	8.33	27.16
KRH40400	Soybean	plastid	19.7	27.04
CDX68679	Canola	cytosol	3.91	26.96
KRH08625	Soybean	plastid	19.57	26.91
Bra036649.1-P	Field mustard	cytosol	13.26	26.85
KRH40513	Soybean	plastid	11.87	26.78
PGSC0003DMT400053185	Potato	mitochondrion	19.82	26.61
Solyc06g007740.1.1	Tomato	cytosol	19.82	26.61
KRH09121	Soybean	mitochondrion	17.93	26.59
KRH09154	Soybean	mitochondrion	18.43	26.26
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.45	26.17
Bra006187.1-P	Field mustard	plastid	9.6	26.12
Bra026958.1-P	Field mustard	mitochondrion	20.83	25.9
VIT_14s0030g02280.t01	Wine grape	plastid	18.31	25.85
AT1G12300.1	Thale cress	mitochondrion	20.71	25.75
AT1G62670.1	Thale cress	mitochondrion	20.33	25.56
PGSC0003DMT400056663	Potato	plastid	18.94	25.51
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.58	25.51
PGSC0003DMT400056665	Potato	mitochondrion	18.94	25.47
Bra026971.1-P	Field mustard	mitochondrion	20.2	25.44
AT1G62590.1	Thale cress	mitochondrion	20.33	25.39
Solyc06g007300.1.1	Tomato	extracellular	18.94	25.34
AT1G62930.1	Thale cress	plastid	20.08	25.28
KRH31646	Soybean	cytosol	16.41	25.1
AT1G63080.3	Thale cress	mitochondrion	19.44	25.08
AT1G63130.1	Thale cress	mitochondrion	19.95	25.08
KRH41817	Soybean	mitochondrion	17.55	25.05
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.57	24.96
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	16.54	24.95
Bra036651.1-P	Field mustard	mitochondrion	16.79	24.86
Bra031731.1-P	Field mustard	mitochondrion	15.91	24.8
AT5G16640.1	Thale cress	mitochondrion	15.78	24.8
PGSC0003DMT400052971	Potato	mitochondrion	18.56	24.79
AT1G63400.1	Thale cress	cytosol, plastid	18.06	24.78
Bra028267.1-P	Field mustard	mitochondrion	19.57	24.76
PGSC0003DMT400008760	Potato	mitochondrion	18.31	24.74
KRH39050	Soybean	mitochondrion	16.54	24.62
Bra016762.1-P	Field mustard	mitochondrion	18.81	24.55
AT1G63150.1	Thale cress	mitochondrion	19.44	24.48
AT1G63070.1	Thale cress	mitochondrion	18.18	24.41
Bra026954.1-P	Field mustard	mitochondrion	19.95	24.31
KRH09097	Soybean	plastid	17.8	24.19
AT1G62720.1	Thale cress	mitochondrion	14.77	24.12
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.57	24.07
PGSC0003DMT400053182	Potato	cytosol	18.18	24.04
Solyc04g080120.1.1	Tomato	extracellular	18.56	24.02
KRH09095	Soybean	plastid	17.68	23.93
PGSC0003DMT400015293	Potato	mitochondrion	18.31	23.77
PGSC0003DMT400015298	Potato	mitochondrion	18.31	23.77
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.29	23.76
AT1G62910.1	Thale cress	mitochondrion	18.94	23.73
AT1G12700.2	Thale cress	cytosol	18.43	23.62
Bra021192.1-P	Field mustard	plastid	15.03	23.61
PGSC0003DMT400053556	Potato	mitochondrion	13.64	23.53
Bra027026.1-P	Field mustard	mitochondrion	15.53	23.52
AT1G62680.2	Thale cress	plastid	16.16	23.36
AT1G64580.1	Thale cress	mitochondrion	15.4	23.33
VIT_14s0030g02260.t01	Wine grape	cytosol	13.01	23.25
Bra025516.1-P	Field mustard	cytosol, mitochondrion	13.89	23.06
KRH08599	Soybean	cytosol, plastid	19.44	23.02
AT1G62914.1	Thale cress	mitochondrion	15.28	22.92
AT1G64583.1	Thale cress	mitochondrion	14.77	22.85
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.14	22.81
AT3G16710.1	Thale cress	mitochondrion	14.52	22.68
AT5G41170.1	Thale cress	mitochondrion	15.03	22.58
Bra026957.1-P	Field mustard	mitochondrion	17.05	22.39
AT1G06580.1	Thale cress	mitochondrion	13.76	21.8
Bra026401.1-P	Field mustard	plastid	14.14	20.93
AT1G64100.2	Thale cress	cytosol	20.96	20.6
AT4G26800.2	Thale cress	mitochondrion, plastid	13.26	20.43
KRH09085	Soybean	mitochondrion	17.8	20.03
Bra027726.1-P	Field mustard	mitochondrion	11.49	19.32
KRH12873	Soybean	cytosol	16.54	18.82
Bra027656.1-P	Field mustard	cytosol	21.09	17.75
KRH39064	Soybean	cytosol	20.33	16.62
Bra016758.1-P	Field mustard	plastid	19.82	13.55

Protein Annotations

EnsemblPlants:TraesCS1B01G085300.1	EnsemblPlantsGene:TraesCS1B01G085300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:70169866..70172244

Molecular Weight (calculated)

87251.9 Da

IEP (calculated)

8.293

GRAVY (calculated)

0.079

Length

792 amino acids

Sequence
(BLAST)

001: MVFPRRICRG HGARPRRDAQ TGGRTPPVRP IATTDHPGPR ALPAWIFLAA LARATPSAAC KDGPSLALAL FNRVCREEAG RRVAPPTVHT YGILMNCCCL
101: VRRPDLGLAL FGRLLRTGLK TNEIVASTIL KCLCCAKRTD EAVNVLLHRM SDLGCVPNVF SYNRVLKSLC EDGRSQRALD LLRVMAKGDG DGCSPCVVSY
201: STVIYGFFKE GKVGKACNLF HEMTQQGIVS DVVTYNSIID ALCKARAMDK AELFLRQMVD DDIRPNGVTY TAIIHGYSTL GQWKKATQMF REMTSRGLVP
301: NTVTWNSFMA SLCKHGRSKE VAELLYSMAV KGHKPNVVSY SILLHGYATE GCFADMVNLF NSMVGKGIVP DHHVFNIFIN AYAKCGMMDE AMHMLTEMRE
401: QGMSPDMCTY ATIIAALCRM GRLADAVDNF NQMIGKGVQP SKVVYRSLIQ GFCTHGDLVK AKEFISEMTD KCICRPTIVF FSSIMHSLCN EGRVIDAHHI
501: FDLVIDIGER PDLIAFNTLI DGYCLVGNME KALGVLDSMV SAGIEPTVVT YSSLISGYCK SGRLDDGVIL FREMEHKRVK PDTVTYNIIL DGLFHAGGTI
601: AAKKLFNEMV ESGTVVSIST YRIVLGGLCR NNCTNEAIVL FQKLGAMNVK FDIAILNTMI NAMYKVQRRE EANDLFASLP ACGLVPNAST YGVVIQNLLK
701: EGPLEEADNM FSSMEKSGCV PSSRLINDII RTLLEKGEIV KAANYMSKID GKIISFEAST TSLMLSLFSE KGKYQEQLQL LPAKYHFFGG VI

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.