Factsheet for TraesCS2B01G560000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G315500.1	Wheat	mitochondrion	40.32	55.14
TraesCS2A01G530600.1	Wheat	cytosol	82.92	47.58
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	45.79	46.42
TraesCS2D01G532600.1	Wheat	plastid	80.87	45.75
TraesCS2B01G560700.1	Wheat	plastid	79.95	45.53
TraesCS2D01G532300.1	Wheat	plastid	80.41	45.37
TraesCS7B01G469500.1	Wheat	cytosol	56.72	44.31
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	49.43	42.97
TraesCS1B01G072300.1	Wheat	plastid	55.35	42.78
TraesCS2B01G126900.1	Wheat	cytosol	36.9	42.41
TraesCS6B01G127500.1	Wheat	cytosol	47.15	42.24
TraesCS1B01G092600.1	Wheat	plastid	49.43	41.97
TraesCS6B01G127200.1	Wheat	cytosol	32.8	41.86
TraesCS2D01G532400.1	Wheat	cytosol	57.4	41.24
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	30.52	41.23
TraesCS2A01G526200.1	Wheat	golgi	62.64	40.38
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	59.91	39.91
TraesCS2D01G532100.1	Wheat	mitochondrion	62.64	39.74
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	33.03	38.26
TraesCS2D01G532500.1	Wheat	plastid	59.0	38.09
TraesCS1B01G038200.1	Wheat	mitochondrion	54.9	38.07
TraesCS1B01G086000.1	Wheat	plastid	56.26	36.01
TraesCS6B01G129100.1	Wheat	cytosol, plastid	22.78	34.72
Solyc06g007280.2.1	Tomato	cytosol	18.68	32.16
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	56.26	31.67
TraesCS1B01G039200.1	Wheat	mitochondrion	56.49	31.63
TraesCS2B01G559900.1	Wheat	cytosol	38.5	31.18
TraesCS1B01G038500.1	Wheat	mitochondrion	55.58	30.89
TraesCS1B01G039100.1	Wheat	mitochondrion	54.9	30.78
TraesCS2B01G560300.1	Wheat	cytosol	38.95	30.05
TraesCS1B01G085900.1	Wheat	mitochondrion	55.58	29.98
TraesCS1B01G092500.1	Wheat	mitochondrion	51.94	29.12
TraesCS1B01G071600.1	Wheat	mitochondrion	56.04	29.01
TraesCS1B01G085300.1	Wheat	mitochondrion	52.16	28.91
TraesCS1B01G072900.2	Wheat	mitochondrion	56.72	28.52
TraesCS1B01G073200.1	Wheat	cytosol	19.13	27.72
TraesCS1B01G072700.1	Wheat	cytosol	31.44	27.06
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	40.55	26.81
TraesCS1B01G072400.1	Wheat	cytosol	41.69	26.33
KRH40513	Soybean	plastid	20.5	25.64
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	41.46	25.45
TraesCS1B01G085400.1	Wheat	cytosol	37.13	25.43
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	41.23	25.31
TraesCS6B01G021600.1	Wheat	mitochondrion	41.23	25.28
TraesCS1B01G038400.1	Wheat	cytosol	32.35	23.36
KRH09084	Soybean	plastid	27.11	23.29
TraesCS1B01G039700.1	Wheat	cytosol	31.89	23.03
TraesCS1B01G075300.1	Wheat	cytosol	31.21	22.95
KRH39004	Soybean	cytosol	25.74	22.74
KRH39054	Soybean	cytosol	25.51	22.54
VIT_12s0028g02320.t01	Wine grape	mitochondrion	24.15	22.22
KRH39074	Soybean	cytosol	25.06	22.13
KRH39057	Soybean	cytosol	24.83	21.93
KRH39112	Soybean	cytosol	24.83	21.93
KRH39072	Soybean	cytosol	24.6	21.77
TraesCS1B01G073100.1	Wheat	cytosol	29.84	21.62
KRH39050	Soybean	mitochondrion	26.2	21.62
KRH17148	Soybean	mitochondrion	26.42	21.28
KRH09121	Soybean	mitochondrion	25.74	21.16
KRH08636	Soybean	cytosol	25.06	21.07
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	25.06	20.95
KRH39066	Soybean	cytosol	26.42	20.9
TraesCS1B01G038300.1	Wheat	plastid	25.97	20.88
KRH08628	Soybean	plastid	26.2	20.83
Bra036649.1-P	Field mustard	cytosol	18.45	20.72
KRH08639	Soybean	mitochondrion, plastid	26.65	20.71
AT5G16640.1	Thale cress	mitochondrion	23.69	20.63
KRH08671	Soybean	cytosol, mitochondrion	25.97	20.61
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	23.69	20.59
KRH40400	Soybean	plastid	26.88	20.45
KRH09154	Soybean	mitochondrion	25.74	20.32
KRH08607	Soybean	cytosol	25.97	20.32
VIT_14s0030g02280.t01	Wine grape	plastid	25.74	20.14
KRH08277	Soybean	plastid	25.97	20.11
KRH31646	Soybean	cytosol	23.69	20.08
AT1G06580.1	Thale cress	mitochondrion	22.55	19.8
KRH08625	Soybean	plastid	25.97	19.79
Solyc06g005220.2.1	Tomato	cytosol	18.22	19.7
AT1G62914.1	Thale cress	mitochondrion	23.69	19.7
KRH09095	Soybean	plastid	26.2	19.66
PGSC0003DMT400053556	Potato	mitochondrion	20.5	19.61
VIT_14s0081g00120.t01	Wine grape	plastid	25.97	19.55
VIT_14s0081g00110.t01	Wine grape	cytosol	21.87	19.55
VIT_14s0081g00270.t01	Wine grape	plastid	25.74	19.48
KRH48615	Soybean	mitochondrion	24.15	19.45
PGSC0003DMT400052977	Potato	cytosol	17.08	19.28
Bra027636.1-P	Field mustard	cytosol	14.12	19.14
KRH09082	Soybean	cytosol	17.77	19.12
KRH09097	Soybean	plastid	25.28	19.04
AT1G64580.1	Thale cress	mitochondrion	22.55	18.93
KRH41817	Soybean	mitochondrion	23.92	18.92
KRH25652	Soybean	cytosol, golgi	23.23	18.89
AT1G63400.1	Thale cress	cytosol, plastid	24.6	18.72
PGSC0003DMT400025074	Potato	cytosol	23.46	18.66
AT1G62720.1	Thale cress	mitochondrion	20.5	18.56
Solyc06g007740.1.1	Tomato	cytosol	24.83	18.47
AT1G64583.1	Thale cress	mitochondrion	21.41	18.36
AT3G16710.1	Thale cress	mitochondrion	21.18	18.34
Bra021192.1-P	Field mustard	plastid	20.96	18.25
Solyc06g007300.1.1	Tomato	extracellular	24.6	18.24
PGSC0003DMT400053185	Potato	mitochondrion	24.37	18.14
Bra025516.1-P	Field mustard	cytosol, mitochondrion	19.59	18.03
AT1G62930.1	Thale cress	plastid	25.74	17.96
AT1G62670.1	Thale cress	mitochondrion	25.51	17.78
AT1G63080.3	Thale cress	mitochondrion	24.83	17.75
VIT_14s0081g00280.t01	Wine grape	mitochondrion	25.74	17.68
AT5G41170.1	Thale cress	mitochondrion	21.18	17.65
AT1G63130.1	Thale cress	mitochondrion	25.28	17.62
Bra026971.1-P	Field mustard	mitochondrion	25.06	17.49
TraesCS6B01G114300.1	Wheat	cytosol	15.49	17.48
Bra036651.1-P	Field mustard	mitochondrion	21.18	17.38
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.59	17.37
AT1G63330.2	Thale cress	cytosol	22.1	17.35
Bra027029.1-P	Field mustard	mitochondrion	9.57	17.28
AT1G62910.1	Thale cress	mitochondrion	24.83	17.25
Bra026882.1-P	Field mustard	cytosol	20.96	17.23
PGSC0003DMT400025067	Potato	cytosol	18.68	17.23
AT4G26800.2	Thale cress	mitochondrion, plastid	20.05	17.12
AT1G12300.1	Thale cress	mitochondrion	24.83	17.11
PGSC0003DMT400008757	Potato	cytosol	19.36	17.07
PGSC0003DMT400056665	Potato	mitochondrion	22.78	16.98
PGSC0003DMT400052971	Potato	mitochondrion	22.78	16.86
Bra026958.1-P	Field mustard	mitochondrion	24.37	16.8
PGSC0003DMT400056663	Potato	plastid	22.32	16.67
AT1G12775.1	Thale cress	cytosol, mitochondrion	24.37	16.61
AT1G63070.1	Thale cress	mitochondrion	22.32	16.61
AT1G62590.1	Thale cress	mitochondrion	23.92	16.56
AT1G63150.1	Thale cress	mitochondrion	23.69	16.53
Bra028267.1-P	Field mustard	mitochondrion	23.46	16.45
PGSC0003DMT400015293	Potato	mitochondrion	22.78	16.39
PGSC0003DMT400015298	Potato	mitochondrion	22.78	16.39
AT1G12620.1	Thale cress	cytosol, mitochondrion	23.01	16.26
Bra026401.1-P	Field mustard	plastid	19.82	16.26
AT1G12700.2	Thale cress	cytosol	22.78	16.18
Bra026954.1-P	Field mustard	mitochondrion	23.69	16.0
AT1G62680.2	Thale cress	plastid	19.82	15.88
PGSC0003DMT400008760	Potato	mitochondrion	21.18	15.87
Bra027026.1-P	Field mustard	mitochondrion	18.91	15.87
Solyc04g080120.1.1	Tomato	extracellular	22.1	15.85
KRH08599	Soybean	cytosol, plastid	24.15	15.84
Bra016762.1-P	Field mustard	mitochondrion	21.87	15.82
KRH09085	Soybean	mitochondrion	25.28	15.77
AT3G22470.1	Thale cress	cytosol, mitochondrion	22.1	15.67
Bra026957.1-P	Field mustard	mitochondrion	20.96	15.26
Bra031731.1-P	Field mustard	mitochondrion	17.54	15.16
Bra006187.1-P	Field mustard	plastid	10.02	15.12
PGSC0003DMT400053182	Potato	cytosol	20.5	15.03
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.45	14.92
Bra026884.1-P	Field mustard	cytosol	15.26	14.6
Bra027726.1-P	Field mustard	mitochondrion	15.26	14.23
PGSC0003DMT400008759	Potato	cytosol	10.25	14.11
KRH12873	Soybean	cytosol	21.41	13.51
TraesCS1B01G084800.1	Wheat	cytosol	14.12	13.36
AT1G64100.2	Thale cress	cytosol	23.92	13.03
KRH39064	Soybean	cytosol	26.65	12.07
Bra026836.1-P	Field mustard	cytosol, mitochondrion	12.98	11.61
Solyc06g007810.1.1	Tomato	cytosol	6.83	11.19
VIT_14s0030g02260.t01	Wine grape	cytosol	10.48	10.38
Bra027656.1-P	Field mustard	cytosol	22.1	10.31
Bra016758.1-P	Field mustard	plastid	21.87	8.28
TraesCS6B01G341800.2	Wheat	cytosol	4.78	5.26
TraesCS1B01G038600.1	Wheat	cytosol	2.05	2.48
TraesCS2D01G532200.1	Wheat	cytosol	0.91	1.37
CDX68679	Canola	cytosol	0.23	0.87

Protein Annotations

EnsemblPlants:TraesCS2B01G560000.1	EnsemblPlantsGene:TraesCS2B01G560000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr2B:+:753792797..753794116

Molecular Weight (calculated)

48693.7 Da

IEP (calculated)

9.046

GRAVY (calculated)

0.117

Length

439 amino acids

Sequence
(BLAST)

001: MPTARLSSIS TSSFRAPSRK PRAPLAALAA ATERVRAGTL SREDAHHLFD ELQGQAAAVP ERGLNNFLAA LARAPPSSAC SDGPGLAFAL FNRMSRGAGA
101: RVVSPTLCTY SILMDCCCRA GRPDLVVAFF GRLLRLGLRL NVISFNNLLK GLCQAKRSNE ALDMLLHRMP ELDCAPDVFS FNIVINGCFR EGEVDKACNL
201: FHEMPQLGVQ PDVVTYNSII IALSRAGAMG KAEVVLRQMV DKGIGPDVMT YNSLIHGYST LGQWKAAVRV FKEMVSVGVL PNAVTLNSFM DSLCKHRRTK
301: EARDIFDSMA AKGHKPNIAS YSTMLNGYAK QGCFDDMTGL FNSMLQNGVV PNHHIFNILI NAYAKRGLMD EAMHMFEVMR QQGVNPDVFS YQIVMDSLCK
401: WVGWMLLWTN LIRWSIKEFH LTKLFTNAWF WVLVLMVIL

Best Arabidopsis Sequence Match ( AT1G06580.1 )
(BLAST)

001: MRRSIVIVIA LTAKGFLHRH LLEKGNLVTA LSLRICNSRA FSGRSDYRER LRSGLHSIKF NDALTLFCDM AESHPLPSIV DFSRLLIAIA KLNKYEAVIS
101: LFRHLEMLGI SHDLYSFTTL IDCFCRCARL SLALSCLGKM MKLGFEPSIV TFGSLVNGFC HVNRFYEAMS LVDQIVGLGY EPNVVIYNTI IDSLCEKGQV
201: NTALDVLKHM KKMGIRPDVV TYNSLITRLF HSGTWGVSAR ILSDMMRMGI SPDVITFSAL IDVYGKEGQL LEAKKQYNEM IQRSVNPNIV TYNSLINGLC
301: IHGLLDEAKK VLNVLVSKGF FPNAVTYNTL INGYCKAKRV DDGMKILCVM SRDGVDGDTF TYNTLYQGYC QAGKFSAAEK VLGRMVSCGV HPDMYTFNIL
401: LDGLCDHGKI GKALVRLEDL QKSKTVVGII TYNIIIKGLC KADKVEDAWY LFCSLALKGV SPDVITYITM MIGLRRKRLW REAHELYRKM QKEDGLMPIK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g06580 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHK2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.