Factsheet for TraesCS1B01G073200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G011400.44	Barley	plastid	82.84	40.75
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	68.32	31.17
TraesCS1B01G072400.1	Wheat	cytosol	67.33	29.35
TraesCS1B01G315500.1	Wheat	mitochondrion	29.37	27.73
TraesCS1B01G086000.1	Wheat	plastid	61.72	27.26
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	69.64	27.05
TraesCS1B01G092500.1	Wheat	mitochondrion	66.67	25.8
TraesCS1B01G072700.1	Wheat	cytosol	42.57	25.29
TraesCS7B01G469500.1	Wheat	cytosol	45.87	24.73
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	26.4	24.62
TraesCS1B01G072900.2	Wheat	mitochondrion	69.97	24.28
TraesCS6B01G127200.1	Wheat	cytosol	27.39	24.13
TraesCS1B01G071600.1	Wheat	mitochondrion	67.33	24.06
TraesCS6B01G129100.1	Wheat	cytosol, plastid	22.77	23.96
TraesCS2B01G126900.1	Wheat	cytosol	30.03	23.82
TraesCS1B01G085300.1	Wheat	mitochondrion	61.72	23.61
TraesCS1B01G085900.1	Wheat	mitochondrion	63.37	23.59
TraesCS1B01G038200.1	Wheat	mitochondrion	48.18	23.06
TraesCS1B01G072300.1	Wheat	plastid	43.23	23.06
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	32.01	22.4
TraesCS6B01G127500.1	Wheat	cytosol	35.97	22.24
TraesCS1B01G073100.1	Wheat	cytosol	43.23	21.62
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	34.65	20.79
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	25.74	20.58
Zm00001d007531_P001	Maize	plastid	54.46	20.27
TraesCS1B01G075300.1	Wheat	cytosol	39.93	20.27
TraesCS1B01G092600.1	Wheat	plastid	34.32	20.12
Zm00001d007548_P001	Maize	plastid	53.8	20.02
CDX68679	Canola	cytosol	7.59	20.0
TraesCS1B01G038500.1	Wheat	mitochondrion	51.82	19.87
KXG28799	Sorghum	plastid	49.84	19.87
Zm00001d007559_P001	Maize	plastid	53.47	19.83
Zm00001d007555_P001	Maize	plastid	53.14	19.78
TraesCS1B01G085400.1	Wheat	cytosol	41.58	19.66
TraesCS1B01G039200.1	Wheat	mitochondrion	50.83	19.64
TraesCS1B01G038400.1	Wheat	cytosol	39.27	19.57
TraesCS1B01G039100.1	Wheat	mitochondrion	50.16	19.41
TraesCS1B01G039700.1	Wheat	cytosol	38.94	19.41
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	27.72	19.13
TraesCS2B01G560700.1	Wheat	plastid	48.51	19.07
Zm00001d007534_P001	Maize	plastid	48.18	18.79
TraesCS1B01G038300.1	Wheat	plastid	31.68	17.58
TraesCS6B01G341800.2	Wheat	cytosol	22.77	17.29
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	40.59	17.2
TraesCS6B01G021600.1	Wheat	mitochondrion	40.59	17.18
TraesCS1B01G038600.1	Wheat	cytosol	20.13	16.8
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	39.6	16.78
KXG35774	Sorghum	cytosol, mitochondrion	25.41	16.28
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	40.92	16.19
TraesCS2B01G560300.1	Wheat	cytosol	30.36	16.17
TraesCS2B01G559900.1	Wheat	cytosol	28.71	16.05
TraesCS1B01G084800.1	Wheat	cytosol	24.42	15.95
Os04t0349600-01	Rice	plastid	19.14	14.99
Os04t0351333-00	Rice	cytosol	40.92	14.11
KRH39112	Soybean	cytosol	21.78	13.28
AT1G63330.2	Thale cress	cytosol	23.76	12.88
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.13	12.79
KRH31646	Soybean	cytosol	21.78	12.74
KRH09084	Soybean	plastid	21.45	12.72
KRH39054	Soybean	cytosol	20.79	12.68
KRH39057	Soybean	cytosol	20.79	12.68
Solyc06g005220.2.1	Tomato	cytosol	16.83	12.56
AT1G63070.1	Thale cress	mitochondrion	24.42	12.54
AT1G63400.1	Thale cress	cytosol, plastid	23.43	12.3
VIT_14s0081g00110.t01	Wine grape	cytosol	19.8	12.22
Bra027658.1-P	Field mustard	cytosol, mitochondrion	21.78	12.15
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.13	12.08
KRH39004	Soybean	cytosol	19.8	12.07
KRH39074	Soybean	cytosol	19.8	12.07
KRH08636	Soybean	cytosol	20.79	12.07
AT1G62670.1	Thale cress	mitochondrion	25.08	12.06
Bra027636.1-P	Field mustard	cytosol	12.87	12.04
Bra026884.1-P	Field mustard	cytosol	18.15	11.98
PGSC0003DMT400025067	Potato	cytosol	18.81	11.97
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.47	11.92
AT1G63130.1	Thale cress	mitochondrion	24.75	11.9
AT1G63080.3	Thale cress	mitochondrion	24.09	11.89
PGSC0003DMT400008757	Potato	cytosol	19.47	11.85
KRH08277	Soybean	plastid	22.11	11.82
AT3G22470.1	Thale cress	cytosol, mitochondrion	24.09	11.79
Solyc06g007280.2.1	Tomato	cytosol	9.9	11.76
KRH08671	Soybean	cytosol, mitochondrion	21.45	11.75
KRH39066	Soybean	cytosol	21.45	11.71
Bra016762.1-P	Field mustard	mitochondrion	23.43	11.7
KRH39072	Soybean	cytosol	19.14	11.69
AT1G63150.1	Thale cress	mitochondrion	24.09	11.61
KRH08628	Soybean	plastid	21.12	11.59
PGSC0003DMT400025074	Potato	cytosol	21.12	11.59
TraesCS6B01G114300.1	Wheat	cytosol	14.85	11.57
KRH08639	Soybean	mitochondrion, plastid	21.45	11.5
KRH25652	Soybean	cytosol, golgi	20.46	11.48
KRH39050	Soybean	mitochondrion	20.13	11.47
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.8	11.43
Bra031731.1-P	Field mustard	mitochondrion	19.14	11.42
KRH08607	Soybean	cytosol	21.12	11.41
KRH48615	Soybean	mitochondrion	20.46	11.38
AT1G62930.1	Thale cress	plastid	23.43	11.29
AT1G62910.1	Thale cress	mitochondrion	23.43	11.23
AT1G62590.1	Thale cress	mitochondrion	23.43	11.2
Solyc06g007740.1.1	Tomato	cytosol	21.78	11.19
AT1G62914.1	Thale cress	mitochondrion	19.47	11.17
KRH09154	Soybean	mitochondrion	20.46	11.15
VIT_14s0081g00120.t01	Wine grape	plastid	21.45	11.15
KRH40400	Soybean	plastid	21.12	11.09
KRH09121	Soybean	mitochondrion	19.47	11.05
PGSC0003DMT400053182	Potato	cytosol	21.78	11.02
PGSC0003DMT400053185	Potato	mitochondrion	21.45	11.02
Bra036649.1-P	Field mustard	cytosol	14.19	11.0
VIT_14s0081g00270.t01	Wine grape	plastid	20.79	10.86
AT1G12300.1	Thale cress	mitochondrion	22.77	10.83
KRH17148	Soybean	mitochondrion	19.47	10.83
Bra026971.1-P	Field mustard	mitochondrion	22.44	10.81
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.11	10.79
Bra026954.1-P	Field mustard	mitochondrion	23.1	10.77
KRH08625	Soybean	plastid	20.13	10.59
PGSC0003DMT400008760	Potato	mitochondrion	20.46	10.58
PGSC0003DMT400056663	Potato	plastid	20.46	10.54
Bra028267.1-P	Field mustard	mitochondrion	21.78	10.54
PGSC0003DMT400056665	Potato	mitochondrion	20.46	10.53
Bra026958.1-P	Field mustard	mitochondrion	22.11	10.52
Bra026882.1-P	Field mustard	cytosol	18.48	10.49
AT1G12700.2	Thale cress	cytosol	21.12	10.36
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.78	10.33
Bra021192.1-P	Field mustard	plastid	17.16	10.32
Solyc06g007300.1.1	Tomato	extracellular	20.13	10.3
PGSC0003DMT400052977	Potato	cytosol	13.2	10.28
Bra026957.1-P	Field mustard	mitochondrion	20.46	10.28
AT1G64580.1	Thale cress	mitochondrion	17.49	10.13
Solyc04g080120.1.1	Tomato	extracellular	20.13	9.97
PGSC0003DMT400052971	Potato	mitochondrion	19.47	9.95
KRH09097	Soybean	plastid	19.14	9.95
Bra027026.1-P	Field mustard	mitochondrion	17.16	9.94
KRH09095	Soybean	plastid	19.14	9.91
KRH41817	Soybean	mitochondrion	18.15	9.91
KRH09082	Soybean	cytosol	13.2	9.8
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.79	9.78
Bra036651.1-P	Field mustard	mitochondrion	17.16	9.72
AT5G41170.1	Thale cress	mitochondrion	16.83	9.68
PGSC0003DMT400015293	Potato	mitochondrion	19.47	9.67
PGSC0003DMT400015298	Potato	mitochondrion	19.47	9.67
AT3G16710.1	Thale cress	mitochondrion	16.17	9.66
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.18	9.64
VIT_14s0030g02280.t01	Wine grape	plastid	17.82	9.63
AT1G64583.1	Thale cress	mitochondrion	16.17	9.57
AT1G64100.2	Thale cress	cytosol	25.41	9.55
KRH08599	Soybean	cytosol, plastid	20.79	9.42
KRH40513	Soybean	plastid	10.89	9.4
AT5G16640.1	Thale cress	mitochondrion	15.51	9.33
AT1G06580.1	Thale cress	mitochondrion	15.18	9.2
AT1G62720.1	Thale cress	mitochondrion	14.52	9.07
Bra026401.1-P	Field mustard	plastid	15.84	8.97
AT1G62680.2	Thale cress	plastid	16.17	8.94
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.19	8.76
Solyc06g007810.1.1	Tomato	cytosol	7.59	8.58
KRH09085	Soybean	mitochondrion	19.8	8.52
Bra027656.1-P	Field mustard	cytosol	25.41	8.18
AT4G26800.2	Thale cress	mitochondrion, plastid	13.2	7.78
Bra006187.1-P	Field mustard	plastid	7.26	7.56
PGSC0003DMT400053556	Potato	mitochondrion	10.56	6.97
PGSC0003DMT400008759	Potato	cytosol	7.26	6.9
KRH12873	Soybean	cytosol	14.85	6.47
Bra016758.1-P	Field mustard	plastid	24.09	6.3
Bra027726.1-P	Field mustard	mitochondrion	9.57	6.16
KRH39064	Soybean	cytosol	19.47	6.09
VIT_14s0030g02260.t01	Wine grape	cytosol	8.58	5.87
Bra027029.1-P	Field mustard	mitochondrion	2.31	2.88

Protein Annotations

EnsemblPlants:TraesCS1B01G073200.1	EnsemblPlantsGene:TraesCS1B01G073200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1B:+:57374298..57375209

Molecular Weight (calculated)

33371.0 Da

IEP (calculated)

8.418

GRAVY (calculated)

0.137

Length

303 amino acids

Sequence
(BLAST)

001: MDCCCRARRP DLGLALFGRF LGTGLRTNEI VATTFLKCLC CAKRTEEVVK VLLHRMPELG CVPNAISYSI VLKSLCENSM SQQALDLLQM VGKEGGCLRD
101: VVAYNTIIHG FFKEGGIDKA CHLFHEMMRQ GVVPTVVTYN TVIDALCKAG EMDKAELVFQ QMARNGAQPN KVTCNGSKFS SLTDGYCSVG KMDKTFKLLD
201: AMVSVGIEPD AVTYSALLDG YFKNGRIDDG LTLFREMSCK GVKPTTVTYG IILDGLYRAG RTAAAKKMFD QMIKSGITVT VSIYTTPSFP VYKAYFNFFV
301: FPI

Best Arabidopsis Sequence Match ( AT1G06580.2 )
(BLAST)

001: MLGISHDLYS FTTLIDCFCR CARLSLALSC LGKMMKLGFE PSIVTFGSLV NGFCHVNRFY EAMSLVDQIV GLGYEPNVVI YNTIIDSLCE KGQVNTALDV
101: LKHMKKMGIR PDVVTYNSLI TRLFHSGTWG VSARILSDMM RMGISPDVIT FSALIDVYGK EGQLLEAKKQ YNEMIQRSVN PNIVTYNSLI NGLCIHGLLD
201: EAKKVLNVLV SKGFFPNAVT YNTLINGYCK AKRVDDGMKI LCVMSRDGVD GDTFTYNTLY QGYCQAGKFS AAEKVLGRMV SCGVHPDMYT FNILLDGLCD
301: HGKIGKALVR LEDLQKSKTV VGIITYNIII KGLCKADKVE DAWYLFCSLA LKGVSPDVIT YITMMIGLRR KRLWREAHEL YRKMQKEDGL MPIK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g06580 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.