Factsheet for TraesCS1B01G092600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G076900.1	Wheat	plastid	86.85	68.34
TraesCS1B01G072300.1	Wheat	plastid	56.67	51.58
TraesCS1B01G315500.1	Wheat	mitochondrion	30.75	49.53
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	41.97	49.43
TraesCS2B01G126900.1	Wheat	cytosol	35.98	48.69
TraesCS1B01G092500.1	Wheat	mitochondrion	69.44	45.85
TraesCS1B01G086000.1	Wheat	plastid	60.73	45.77
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	44.68	45.74
TraesCS6B01G127200.1	Wheat	cytosol	30.37	45.64
TraesCS6B01G127500.1	Wheat	cytosol	42.94	45.31
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	37.33	44.57
TraesCS1B01G038200.1	Wheat	mitochondrion	52.42	42.81
TraesCS1B01G072700.1	Wheat	cytosol	41.39	41.96
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	63.06	41.79
TraesCS1B01G085900.1	Wheat	mitochondrion	63.64	40.42
TraesCS6B01G129100.1	Wheat	cytosol, plastid	22.24	39.93
TraesCS1B01G071600.1	Wheat	mitochondrion	64.41	39.27
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	24.56	39.08
TraesCS1B01G072900.2	Wheat	mitochondrion	64.6	38.26
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	28.05	38.26
Os04t0349600-01	Rice	plastid	28.24	37.73
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	48.36	37.65
TraesCS1B01G085300.1	Wheat	mitochondrion	56.87	37.12
TraesCS1B01G072400.1	Wheat	cytosol	48.94	36.4
TraesCS1B01G038500.1	Wheat	mitochondrion	53.77	35.19
TraesCS1B01G039200.1	Wheat	mitochondrion	52.8	34.82
TraesCS1B01G073200.1	Wheat	cytosol	20.12	34.32
TraesCS1B01G039100.1	Wheat	mitochondrion	50.87	33.59
TraesCS2B01G560700.1	Wheat	plastid	49.52	33.2
Zm00001d007548_P001	Maize	plastid	51.26	32.56
Zm00001d007555_P001	Maize	plastid	51.26	32.56
Zm00001d007559_P001	Maize	plastid	51.26	32.44
TraesCS7B01G469500.1	Wheat	cytosol	35.2	32.38
Zm00001d007531_P001	Maize	plastid	50.48	32.06
KXG28799	Sorghum	plastid	47.0	31.97
TraesCS1B01G073100.1	Wheat	cytosol	36.17	30.86
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	42.55	30.77
Zm00001d007534_P001	Maize	plastid	46.23	30.76
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	45.26	30.55
TraesCS1B01G075300.1	Wheat	cytosol	35.2	30.49
TraesCS1B01G085400.1	Wheat	cytosol	37.52	30.27
TraesCS6B01G021600.1	Wheat	mitochondrion	41.78	30.17
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	41.59	30.07
TraesCS1B01G038400.1	Wheat	cytosol	33.27	28.29
TraesCS1B01G039700.1	Wheat	cytosol	33.27	28.29
Solyc06g007280.2.1	Tomato	cytosol	13.93	28.24
TraesCS1B01G038300.1	Wheat	plastid	29.59	28.02
KRH40513	Soybean	plastid	18.76	27.64
TraesCS1B01G084800.1	Wheat	cytosol	23.6	26.29
TraesCS2B01G559900.1	Wheat	cytosol	25.15	23.99
KRH39054	Soybean	cytosol	23.02	23.94
KRH39004	Soybean	cytosol	22.82	23.74
Os04t0351333-00	Rice	cytosol	40.23	23.66
TraesCS6B01G114300.1	Wheat	cytosol	17.8	23.65
TraesCS2B01G560300.1	Wheat	cytosol	25.92	23.55
KRH39074	Soybean	cytosol	22.24	23.14
VIT_12s0028g02320.t01	Wine grape	mitochondrion	21.28	23.06
KRH39112	Soybean	cytosol	22.05	22.94
KRH08636	Soybean	cytosol	23.02	22.8
KRH39072	Soybean	cytosol	21.66	22.58
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	22.82	22.48
KRH39057	Soybean	cytosol	21.28	22.13
VIT_14s0030g02280.t01	Wine grape	plastid	23.79	21.93
KRH39050	Soybean	mitochondrion	22.44	21.8
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	21.28	21.78
KRH39066	Soybean	cytosol	23.21	21.62
KRH08628	Soybean	plastid	22.82	21.38
KRH08671	Soybean	cytosol, mitochondrion	22.82	21.34
KRH48615	Soybean	mitochondrion	22.24	21.1
VIT_14s0081g00120.t01	Wine grape	plastid	23.79	21.1
PGSC0003DMT400008757	Potato	cytosol	20.31	21.08
KRH09084	Soybean	plastid	20.7	20.94
KRH17148	Soybean	mitochondrion	22.05	20.92
AT1G62914.1	Thale cress	mitochondrion	21.28	20.83
KRH41817	Soybean	mitochondrion	22.24	20.72
KRH08277	Soybean	plastid	22.63	20.63
KRH08639	Soybean	mitochondrion, plastid	22.44	20.53
KRH08625	Soybean	plastid	22.82	20.49
Bra036649.1-P	Field mustard	cytosol	15.47	20.46
KRH40400	Soybean	plastid	22.82	20.45
KRH09154	Soybean	mitochondrion	21.86	20.32
KRH08607	Soybean	cytosol	22.05	20.32
AT1G63400.1	Thale cress	cytosol, plastid	22.63	20.28
Bra006187.1-P	Field mustard	plastid	11.41	20.27
KRH31646	Soybean	cytosol	20.31	20.27
AT5G16640.1	Thale cress	mitochondrion	19.54	20.04
VIT_14s0081g00110.t01	Wine grape	cytosol	18.96	19.96
Solyc06g005220.2.1	Tomato	cytosol	15.67	19.95
KRH09121	Soybean	mitochondrion	20.5	19.85
Bra021192.1-P	Field mustard	plastid	19.34	19.84
AT1G06580.1	Thale cress	mitochondrion	19.15	19.8
AT1G62720.1	Thale cress	mitochondrion	18.57	19.79
AT1G62670.1	Thale cress	mitochondrion	23.98	19.68
AT1G63330.2	Thale cress	cytosol	21.28	19.68
KXG35774	Sorghum	cytosol, mitochondrion	17.99	19.66
VIT_14s0081g00270.t01	Wine grape	plastid	22.05	19.66
PGSC0003DMT400053556	Potato	mitochondrion	17.41	19.61
AT3G16710.1	Thale cress	mitochondrion	19.15	19.53
KRH25652	Soybean	cytosol, golgi	20.31	19.44
AT1G62930.1	Thale cress	plastid	23.4	19.24
Bra026882.1-P	Field mustard	cytosol	19.73	19.1
Bra028267.1-P	Field mustard	mitochondrion	23.02	19.01
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.82	19.0
AT1G64583.1	Thale cress	mitochondrion	18.76	18.95
AT1G63130.1	Thale cress	mitochondrion	23.02	18.89
Bra036651.1-P	Field mustard	mitochondrion	19.54	18.88
PGSC0003DMT400053185	Potato	mitochondrion	21.47	18.81
Solyc06g007740.1.1	Tomato	cytosol	21.47	18.81
VIT_14s0081g00280.t01	Wine grape	mitochondrion	23.02	18.62
Bra026971.1-P	Field mustard	mitochondrion	22.63	18.6
AT3G22470.1	Thale cress	cytosol, mitochondrion	22.24	18.58
AT1G64580.1	Thale cress	mitochondrion	18.76	18.55
Bra026958.1-P	Field mustard	mitochondrion	22.82	18.52
Bra027029.1-P	Field mustard	mitochondrion	8.7	18.52
Bra027636.1-P	Field mustard	cytosol	11.61	18.52
AT1G62910.1	Thale cress	mitochondrion	22.63	18.51
Bra025516.1-P	Field mustard	cytosol, mitochondrion	17.02	18.45
Solyc06g007300.1.1	Tomato	extracellular	21.08	18.41
Bra026954.1-P	Field mustard	mitochondrion	23.02	18.31
AT1G62590.1	Thale cress	mitochondrion	22.44	18.3
AT1G63080.3	Thale cress	mitochondrion	21.66	18.24
AT1G12300.1	Thale cress	mitochondrion	22.44	18.21
Bra026884.1-P	Field mustard	cytosol	16.05	18.08
AT1G12775.1	Thale cress	cytosol, mitochondrion	22.44	18.01
AT1G63070.1	Thale cress	mitochondrion	20.5	17.97
AT1G63150.1	Thale cress	mitochondrion	21.86	17.96
PGSC0003DMT400025074	Potato	cytosol	19.15	17.93
PGSC0003DMT400025067	Potato	cytosol	16.44	17.86
KRH09095	Soybean	plastid	20.12	17.78
PGSC0003DMT400025087	Potato	endoplasmic reticulum	17.02	17.78
PGSC0003DMT400056663	Potato	plastid	20.12	17.69
PGSC0003DMT400056665	Potato	mitochondrion	20.12	17.66
AT1G12700.2	Thale cress	cytosol	21.08	17.64
Bra016762.1-P	Field mustard	mitochondrion	20.7	17.63
PGSC0003DMT400008760	Potato	mitochondrion	19.92	17.58
PGSC0003DMT400015293	Potato	mitochondrion	20.7	17.54
PGSC0003DMT400015298	Potato	mitochondrion	20.7	17.54
PGSC0003DMT400053182	Potato	cytosol	20.31	17.53
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.63	17.52
AT4G26800.2	Thale cress	mitochondrion, plastid	17.41	17.51
Bra026401.1-P	Field mustard	plastid	17.99	17.38
KRH09097	Soybean	plastid	19.54	17.32
TraesCS6B01G341800.2	Wheat	cytosol	13.35	17.29
Bra026957.1-P	Field mustard	mitochondrion	20.12	17.25
PGSC0003DMT400052977	Potato	cytosol	12.96	17.22
Bra027026.1-P	Field mustard	mitochondrion	17.41	17.21
PGSC0003DMT400052971	Potato	mitochondrion	19.73	17.2
AT1G62680.2	Thale cress	plastid	18.18	17.15
AT5G41170.1	Thale cress	mitochondrion	17.21	16.89
Solyc04g080120.1.1	Tomato	extracellular	19.92	16.83
Bra027726.1-P	Field mustard	mitochondrion	15.28	16.77
KRH08599	Soybean	cytosol, plastid	21.47	16.59
KRH09082	Soybean	cytosol	12.96	16.42
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.21	16.39
Bra031731.1-P	Field mustard	mitochondrion	15.86	16.14
PGSC0003DMT400008759	Potato	cytosol	9.86	15.99
Solyc06g007810.1.1	Tomato	cytosol	7.93	15.3
KRH09085	Soybean	mitochondrion	20.12	14.77
AT1G64100.2	Thale cress	cytosol	22.44	14.39
KRH12873	Soybean	cytosol	18.96	14.08
TraesCS1B01G038600.1	Wheat	cytosol	9.67	13.77
KRH39064	Soybean	cytosol	23.79	12.69
VIT_14s0030g02260.t01	Wine grape	cytosol	10.83	12.64
Bra027656.1-P	Field mustard	cytosol	22.44	12.33
Bra016758.1-P	Field mustard	plastid	21.47	9.58
CDX68679	Canola	cytosol	0.19	0.87

Protein Annotations

EnsemblPlants:TraesCS1B01G092600.1	EnsemblPlantsGene:TraesCS1B01G092600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:94325745..94327298

Molecular Weight (calculated)

56913.5 Da

IEP (calculated)

8.025

GRAVY (calculated)

0.044

Length

517 amino acids

Sequence
(BLAST)

001: MRPCRTPLLD STSPLSVLLL DHLHRNRPSP PPSASPPSAF WSPIAAFAAA TKRARAGTLS PEDAHHLFDE LLRQSNPVPN RFLNSFLAAL ARAPPSDACG
101: DGPALTVALF NRLCREEAGP CVAPPTIYTY SILMDSCCRV GRPDLGLAVF GRLLKSGFKA DQSTASSLLM CLCDVGRTNE AVDVLLHRIS ELGCEPNVIP
201: YNIVLKSLCD SRRSQQALDL LQMMAQRGCC SPNVVSYNTV IHGLFKEGEV SMACSLFYEM MRQRVMPNVV TYRSMIGALC KVGATDKAKL VLGHMVGNGF
301: RPDKYIWNSF MASLCKQGRS KEAAQLFDYM VAKGHKPDVV TYSTLLHGYA TEGCFTDMIN LFNSMEGNGI VANSCVFNIL IDAYAKRGMM HEAMLIFTEM
401: RERRVSPDIF TYGIIIAALC RMGRLSDAME KINEMVATGL QPDKAVYYSL IQGFCTHDDL VKAKELVSEM MTKGIPRPNI VFFNSVIASL CKEGRVKDAH
501: GIFDLALNIG ERPDLIH

Best Arabidopsis Sequence Match ( AT1G12700.1 )
(BLAST)

001: MMIKRSITTN MKALRLIQPH LLKTGSLRTD LLCTISSFFS SCERDFSSIS NGNVCFRERL RSGIVDIKKD DAIALFQEMI RSRPLPSLVD FSRFFSAIAR
101: TKQFNLVLDF CKQLELNGIA HNIYTLNIMI NCFCRCCKTC FAYSVLGKVM KLGYEPDTTT FNTLIKGLFL EGKVSEAVVL VDRMVENGCQ PDVVTYNSIV
201: NGICRSGDTS LALDLLRKME ERNVKADVFT YSTIIDSLCR DGCIDAAISL FKEMETKGIK SSVVTYNSLV RGLCKAGKWN DGALLLKDMV SREIVPNVIT
301: FNVLLDVFVK EGKLQEANEL YKEMITRGIS PNIITYNTLM DGYCMQNRLS EANNMLDLMV RNKCSPDIVT FTSLIKGYCM VKRVDDGMKV FRNISKRGLV
401: ANAVTYSILV QGFCQSGKIK LAEELFQEMV SHGVLPDVMT YGILLDGLCD NGKLEKALEI FEDLQKSKMD LGIVMYTTII EGMCKGGKVE DAWNLFCSLP
501: CKGVKPNVMT YTVMISGLCK KGSLSEANIL LRKMEEDGNA PNDCTYNTLI RAHLRDGDLT ASAKLIEEMK SCGFSADASS IKMVIDMLLS GELDKSFLDM
601: LS

Arabidopsis Description

ATP binding;nucleic acid binding;helicases [Source:TAIR;Acc:AT1G12700]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.