Factsheet for TraesCS1B01G075000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	79.22	75.47
TraesCS1B01G075300.1	Wheat	cytosol	61.6	68.51
TraesCS1B01G073200.1	Wheat	cytosol	31.17	68.32
TraesCS1B01G072400.1	Wheat	cytosol	69.58	66.47
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	77.41	65.9
TraesCS2B01G126900.1	Wheat	cytosol	37.35	64.92
TraesCS1B01G072700.1	Wheat	cytosol	49.55	64.51
TraesCS1B01G073100.1	Wheat	cytosol	55.42	60.73
TraesCS1B01G085400.1	Wheat	cytosol	54.67	56.63
TraesCS6B01G127200.1	Wheat	cytosol	29.22	56.4
TraesCS6B01G341800.2	Wheat	cytosol	33.28	55.39
TraesCS1B01G084800.1	Wheat	cytosol	38.7	55.39
TraesCS1B01G092500.1	Wheat	mitochondrion	65.21	55.3
TraesCS1B01G085900.1	Wheat	mitochondrion	67.47	55.04
TraesCS1B01G071600.1	Wheat	mitochondrion	69.88	54.72
TraesCS1B01G039700.1	Wheat	cytosol	49.7	54.28
TraesCS1B01G038400.1	Wheat	cytosol	49.55	54.11
TraesCS7B01G469500.1	Wheat	cytosol	45.63	53.91
TraesCS1B01G086000.1	Wheat	plastid	55.57	53.79
TraesCS1B01G085300.1	Wheat	mitochondrion	64.01	53.66
TraesCS1B01G072900.2	Wheat	mitochondrion	69.43	52.81
TraesCS1B01G072300.1	Wheat	plastid	44.43	51.94
TraesCS2B01G559900.1	Wheat	cytosol	39.91	48.89
TraesCS2B01G560300.1	Wheat	cytosol	41.57	48.51
TraesCS1B01G038200.1	Wheat	mitochondrion	46.23	48.5
TraesCS1B01G092600.1	Wheat	plastid	37.65	48.36
TraesCS1B01G039200.1	Wheat	mitochondrion	55.72	47.19
TraesCS1B01G039100.1	Wheat	mitochondrion	55.27	46.87
TraesCS1B01G038500.1	Wheat	mitochondrion	55.57	46.71
TraesCS1B01G038600.1	Wheat	cytosol	25.45	46.56
KXG35774	Sorghum	cytosol, mitochondrion	32.08	45.03
Zm00001d007531_P001	Maize	plastid	54.82	44.72
Zm00001d007548_P001	Maize	plastid	54.67	44.59
Zm00001d007559_P001	Maize	plastid	54.82	44.55
Zm00001d007555_P001	Maize	plastid	54.37	44.35
TraesCS2B01G560700.1	Wheat	plastid	51.2	44.1
TraesCS6B01G127500.1	Wheat	cytosol	32.53	44.08
KXG28799	Sorghum	plastid	50.15	43.82
Zm00001d007534_P001	Maize	plastid	51.2	43.76
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	49.7	43.08
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	32.68	42.97
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	27.26	41.8
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	26.81	40.55
TraesCS6B01G021600.1	Wheat	mitochondrion	41.42	38.41
TraesCS1B01G315500.1	Wheat	mitochondrion	18.52	38.32
TraesCS1B01G038300.1	Wheat	plastid	31.17	37.91
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	40.66	37.76
TraesCS6B01G114300.1	Wheat	cytosol	21.99	37.53
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	39.31	36.5
Os04t0351333-00	Rice	cytosol	47.74	36.06
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	17.47	35.69
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	19.73	34.56
Os04t0349600-01	Rice	plastid	18.67	32.04
Solyc06g007280.2.1	Tomato	cytosol	12.2	31.76
KRH39112	Soybean	cytosol	23.19	30.99
KRH39054	Soybean	cytosol	23.04	30.78
KRH39057	Soybean	cytosol	23.04	30.78
KRH39074	Soybean	cytosol	22.89	30.58
KRH39072	Soybean	cytosol	22.44	30.04
KRH39004	Soybean	cytosol	22.44	29.98
Solyc06g005220.2.1	Tomato	cytosol	18.22	29.8
Bra027636.1-P	Field mustard	cytosol	14.46	29.63
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.93	29.14
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	21.99	28.91
PGSC0003DMT400008759	Potato	cytosol	13.7	28.53
Solyc06g007810.1.1	Tomato	cytosol	11.45	28.36
PGSC0003DMT400052977	Potato	cytosol	16.57	28.28
VIT_14s0081g00110.t01	Wine grape	cytosol	20.78	28.11
KRH08636	Soybean	cytosol	21.84	27.78
Bra026884.1-P	Field mustard	cytosol	19.13	27.67
KRH39066	Soybean	cytosol	22.74	27.21
KRH08671	Soybean	cytosol, mitochondrion	22.59	27.12
PGSC0003DMT400008757	Potato	cytosol	20.33	27.11
KRH17148	Soybean	mitochondrion	22.14	26.97
KRH09084	Soybean	plastid	20.63	26.81
Bra006187.1-P	Field mustard	plastid	11.75	26.8
KRH48615	Soybean	mitochondrion	21.84	26.61
KRH08607	Soybean	cytosol	22.44	26.56
KRH08639	Soybean	mitochondrion, plastid	22.59	26.55
KRH09082	Soybean	cytosol	16.11	26.23
KRH40513	Soybean	plastid	13.86	26.21
KRH09154	Soybean	mitochondrion	21.84	26.08
PGSC0003DMT400025067	Potato	cytosol	18.67	26.05
KRH40400	Soybean	plastid	22.44	25.82
KRH25652	Soybean	cytosol, golgi	20.93	25.74
Bra036649.1-P	Field mustard	cytosol	15.06	25.58
KRH08628	Soybean	plastid	21.23	25.54
KRH08625	Soybean	plastid	22.14	25.52
Bra026882.1-P	Field mustard	cytosol	20.48	25.47
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.98	25.45
AT1G63330.2	Thale cress	cytosol	21.39	25.4
KRH08277	Soybean	plastid	21.69	25.4
TraesCS6B01G129100.1	Wheat	cytosol, plastid	10.99	25.35
Bra027029.1-P	Field mustard	mitochondrion	9.19	25.1
PGSC0003DMT400025074	Potato	cytosol	20.78	25.0
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.73	24.95
KRH09121	Soybean	mitochondrion	20.03	24.91
KRH41817	Soybean	mitochondrion	20.78	24.86
KRH31646	Soybean	cytosol	19.13	24.52
Solyc06g007740.1.1	Tomato	cytosol	21.54	24.24
AT5G16640.1	Thale cress	mitochondrion	18.37	24.21
KRH39050	Soybean	mitochondrion	19.28	24.06
AT1G63400.1	Thale cress	cytosol, plastid	20.78	23.92
PGSC0003DMT400053185	Potato	mitochondrion	21.23	23.9
AT1G12300.1	Thale cress	mitochondrion	22.74	23.7
VIT_14s0081g00120.t01	Wine grape	plastid	20.78	23.67
PGSC0003DMT400056665	Potato	mitochondrion	20.93	23.6
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.99	23.59
AT1G62914.1	Thale cress	mitochondrion	18.67	23.48
Solyc06g007300.1.1	Tomato	extracellular	20.93	23.48
PGSC0003DMT400056663	Potato	plastid	20.78	23.47
AT1G12620.1	Thale cress	cytosol, mitochondrion	21.84	23.35
AT1G63130.1	Thale cress	mitochondrion	21.99	23.17
VIT_14s0030g02280.t01	Wine grape	plastid	19.58	23.17
VIT_14s0081g00270.t01	Wine grape	plastid	20.18	23.1
Bra016762.1-P	Field mustard	mitochondrion	20.93	22.9
AT1G62670.1	Thale cress	mitochondrion	21.69	22.86
Bra031731.1-P	Field mustard	mitochondrion	17.47	22.83
AT1G63080.3	Thale cress	mitochondrion	20.93	22.64
PGSC0003DMT400052971	Potato	mitochondrion	20.18	22.6
AT1G62930.1	Thale cress	plastid	21.39	22.58
Bra026971.1-P	Field mustard	mitochondrion	21.39	22.58
KRH09097	Soybean	plastid	19.73	22.47
Bra021192.1-P	Field mustard	plastid	17.02	22.42
AT1G62590.1	Thale cress	mitochondrion	21.39	22.4
KRH09095	Soybean	plastid	19.73	22.39
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.54	22.38
AT1G64580.1	Thale cress	mitochondrion	17.62	22.37
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.69	22.36
PGSC0003DMT400008760	Potato	mitochondrion	19.73	22.35
AT1G64583.1	Thale cress	mitochondrion	17.17	22.27
Bra036651.1-P	Field mustard	mitochondrion	17.92	22.24
Bra028267.1-P	Field mustard	mitochondrion	20.93	22.2
PGSC0003DMT400053182	Potato	cytosol	20.03	22.2
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.42	22.2
AT1G62910.1	Thale cress	mitochondrion	21.08	22.15
Bra026958.1-P	Field mustard	mitochondrion	21.23	22.14
Solyc04g080120.1.1	Tomato	extracellular	20.33	22.06
AT1G63070.1	Thale cress	mitochondrion	19.58	22.03
AT3G16710.1	Thale cress	mitochondrion	16.72	21.89
PGSC0003DMT400053556	Potato	mitochondrion	15.06	21.79
CDX68679	Canola	cytosol	3.77	21.74
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.77	21.73
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.51	21.59
AT1G62680.2	Thale cress	plastid	17.77	21.53
PGSC0003DMT400015293	Potato	mitochondrion	19.73	21.48
PGSC0003DMT400015298	Potato	mitochondrion	19.73	21.48
AT1G63150.1	Thale cress	mitochondrion	20.33	21.46
AT1G62720.1	Thale cress	mitochondrion	15.66	21.44
AT5G41170.1	Thale cress	mitochondrion	17.02	21.44
AT1G06580.1	Thale cress	mitochondrion	16.11	21.4
KRH08599	Soybean	cytosol, plastid	21.39	21.23
Bra027026.1-P	Field mustard	mitochondrion	16.72	21.22
Bra026954.1-P	Field mustard	mitochondrion	20.63	21.08
VIT_14s0030g02260.t01	Wine grape	cytosol	13.86	20.77
Bra026957.1-P	Field mustard	mitochondrion	18.83	20.73
AT1G12700.2	Thale cress	cytosol	19.13	20.55
Bra026401.1-P	Field mustard	plastid	15.96	19.81
KRH09085	Soybean	mitochondrion	20.18	19.03
AT1G64100.2	Thale cress	cytosol	22.89	18.86
AT4G26800.2	Thale cress	mitochondrion, plastid	14.46	18.68
Bra027726.1-P	Field mustard	mitochondrion	13.1	18.47
Bra027656.1-P	Field mustard	cytosol	25.9	18.28
KRH12873	Soybean	cytosol	18.67	17.82
KRH39064	Soybean	cytosol	23.04	15.79
Bra016758.1-P	Field mustard	plastid	21.08	12.08

Protein Annotations

EnsemblPlants:TraesCS1B01G075000.1	EnsemblPlantsGene:TraesCS1B01G075000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1B:-:58114326..58116320

Molecular Weight (calculated)

73788.3 Da

IEP (calculated)

7.899

GRAVY (calculated)

0.063

Length

664 amino acids

Sequence
(BLAST)

001: MPRRSRPAGG ILMGCFCGAH RPDLGLALFG RFLGTGLKTN KIVATTFLKC LCYAKRTDEA VNLLLRRMPE LGCVPDAISY TIVLKSLCEN SMSQRALDLL
101: QMVAEGGGAC SLNVVVYSTV IHGFFKEGET GKACNLFHEM IHQGVVPNVV TYSSIIDALC KARAMDKAEL VLQQMVDSGA QPNNVTYTCM IHGYSTSGQL
201: KEAAKMFRKM TTRGLVPDIV TCSSLMTFLC KHGRSKEAAE IFYSMTAKGL KPNIIAYSIL LHGYATEGCF VDMNNLFNSM EDNGIAANCY VFNILIYAYA
301: KRGMMDEAML IFTEMREKGV SPDVVTYSTV IAAFCRLRRL ANAMDKFNEM TDMGFQPDTT VYHSLIQGFC MHGDLVKAKG LVSEMMNKGI PRPDIAFFNS
401: IINTLCKEGG VMDAQDVFDL VTAIDERPNI ITFNSLIDGY CLVGEMDKAF GVLDAMKSVG AEPDIVTYNT LVNGYCRNGR IDDGLTLFRE MPHKRIKPDT
501: VTYGIILDGL FHAARTVVAR KMFHEMIESE TTVDIPVYNI ILKGLCRNNC ADEAIAMFQK LGAMNVKFDI GTLNTMINSL YKVGRKEEAK DLFAAISASR
601: LVPNASTYSI MIINYLKEGS VEDAKHIFFI NGQEWYSSQL SSYKLYHQNV VFLRKYHQNV VGKR

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.