Factsheet for TraesCS1B01G315500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G038200.1	Wheat	mitochondrion	85.36	43.29
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	55.14	40.32
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	36.45	36.0
Os04t0349600-01	Rice	plastid	42.68	35.4
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	46.73	34.64
TraesCS1B01G039200.1	Wheat	mitochondrion	84.11	34.44
TraesCS6B01G129100.1	Wheat	cytosol, plastid	30.84	34.38
TraesCS2B01G126900.1	Wheat	cytosol	40.81	34.29
TraesCS1B01G072300.1	Wheat	plastid	59.19	33.45
TraesCS1B01G039100.1	Wheat	mitochondrion	77.57	31.8
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	49.22	31.29
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	36.45	30.87
TraesCS6B01G127500.1	Wheat	cytosol	47.04	30.82
TraesCS1B01G038500.1	Wheat	mitochondrion	75.7	30.76
TraesCS1B01G092600.1	Wheat	plastid	49.53	30.75
HORVU1Hr1G004750.6	Barley	plastid	76.32	30.7
TraesCS1B01G073200.1	Wheat	cytosol	27.73	29.37
TraesCS1B01G038300.1	Wheat	plastid	46.73	27.47
TraesCS1B01G086000.1	Wheat	plastid	56.39	26.38
TraesCS6B01G127200.1	Wheat	cytosol	26.79	25.0
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	60.44	24.87
TraesCS1B01G071600.1	Wheat	mitochondrion	64.17	24.29
KXG28799	Sorghum	plastid	56.07	23.68
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	50.78	23.32
TraesCS1B01G085900.1	Wheat	mitochondrion	57.63	22.73
TraesCS1B01G092500.1	Wheat	mitochondrion	54.52	22.35
TraesCS1B01G072900.2	Wheat	mitochondrion	60.44	22.22
TraesCS2B01G560700.1	Wheat	plastid	53.27	22.18
Zm00001d007534_P001	Maize	plastid	53.58	22.14
Zm00001d007531_P001	Maize	plastid	53.89	21.25
Zm00001d007548_P001	Maize	plastid	53.89	21.25
Zm00001d007559_P001	Maize	plastid	53.89	21.18
Zm00001d007555_P001	Maize	plastid	53.58	21.13
Solyc06g007280.2.1	Tomato	cytosol	16.2	20.39
TraesCS7B01G469500.1	Wheat	cytosol	34.27	19.57
TraesCS1B01G038400.1	Wheat	cytosol	36.76	19.41
TraesCS1B01G085300.1	Wheat	mitochondrion	47.66	19.32
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	45.48	19.06
KRH40513	Soybean	plastid	20.56	18.8
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	38.32	18.52
TraesCS1B01G072400.1	Wheat	cytosol	38.32	17.7
TraesCS6B01G021600.1	Wheat	mitochondrion	37.07	16.62
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	36.76	16.5
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	36.76	16.5
TraesCS1B01G039700.1	Wheat	cytosol	30.53	16.12
TraesCS1B01G072700.1	Wheat	cytosol	25.55	16.08
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	25.23	15.43
VIT_12s0028g02320.t01	Wine grape	mitochondrion	22.74	15.3
KRH09084	Soybean	plastid	24.3	15.26
KRH39050	Soybean	mitochondrion	23.99	14.47
KRH41817	Soybean	mitochondrion	23.99	13.87
AT5G16640.1	Thale cress	mitochondrion	21.5	13.69
KRH39054	Soybean	cytosol	21.18	13.68
KRH39112	Soybean	cytosol	21.18	13.68
AT1G62914.1	Thale cress	mitochondrion	22.43	13.64
KRH48615	Soybean	mitochondrion	23.05	13.58
VIT_14s0030g02280.t01	Wine grape	plastid	23.68	13.55
KRH39074	Soybean	cytosol	20.87	13.48
TraesCS1B01G085400.1	Wheat	cytosol	26.79	13.42
KRH09095	Soybean	plastid	24.3	13.33
KRH39072	Soybean	cytosol	20.56	13.31
KRH09121	Soybean	mitochondrion	22.12	13.3
KRH39004	Soybean	cytosol	20.56	13.28
KRH08277	Soybean	plastid	23.36	13.23
KRH17148	Soybean	mitochondrion	22.43	13.21
KRH39066	Soybean	cytosol	22.74	13.15
KRH09154	Soybean	mitochondrion	22.74	13.13
Os04t0351333-00	Rice	cytosol	35.83	13.08
KRH39057	Soybean	cytosol	20.25	13.08
KRH09097	Soybean	plastid	23.68	13.04
Bra021192.1-P	Field mustard	plastid	20.25	12.9
VIT_14s0081g00270.t01	Wine grape	plastid	23.05	12.76
KRH31646	Soybean	cytosol	20.56	12.74
VIT_14s0081g00120.t01	Wine grape	plastid	23.05	12.69
AT1G63400.1	Thale cress	cytosol, plastid	22.74	12.65
AT1G62670.1	Thale cress	mitochondrion	24.61	12.54
Bra036649.1-P	Field mustard	cytosol	15.26	12.53
KRH08639	Soybean	mitochondrion, plastid	21.81	12.39
AT1G63070.1	Thale cress	mitochondrion	22.74	12.37
Bra036651.1-P	Field mustard	mitochondrion	20.56	12.34
Solyc06g007300.1.1	Tomato	extracellular	22.74	12.33
KRH08628	Soybean	plastid	21.18	12.32
KRH40400	Soybean	plastid	22.12	12.3
KRH08636	Soybean	cytosol	19.94	12.26
AT1G62930.1	Thale cress	plastid	23.99	12.24
AT1G63130.1	Thale cress	mitochondrion	23.68	12.06
AT4G26800.2	Thale cress	mitochondrion, plastid	19.31	12.06
KXG35774	Sorghum	cytosol, mitochondrion	17.76	12.05
PGSC0003DMT400053185	Potato	mitochondrion	22.12	12.03
Solyc06g007740.1.1	Tomato	cytosol	22.12	12.03
AT3G16710.1	Thale cress	mitochondrion	19.0	12.03
AT1G06580.1	Thale cress	mitochondrion	18.69	12.0
KRH08625	Soybean	plastid	21.5	11.98
VIT_14s0081g00280.t01	Wine grape	mitochondrion	23.68	11.89
AT1G62910.1	Thale cress	mitochondrion	23.36	11.87
PGSC0003DMT400025074	Potato	cytosol	20.25	11.78
KRH08671	Soybean	cytosol, mitochondrion	20.25	11.75
AT1G62720.1	Thale cress	mitochondrion	17.76	11.75
AT1G63080.3	Thale cress	mitochondrion	22.43	11.73
Bra026971.1-P	Field mustard	mitochondrion	22.74	11.61
PGSC0003DMT400008760	Potato	mitochondrion	21.18	11.6
TraesCS1B01G073100.1	Wheat	cytosol	21.81	11.55
AT1G64583.1	Thale cress	mitochondrion	18.38	11.52
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.07	11.49
AT1G64580.1	Thale cress	mitochondrion	18.69	11.47
AT3G22470.1	Thale cress	cytosol, mitochondrion	22.12	11.47
AT1G63330.2	Thale cress	cytosol	19.94	11.45
AT1G63150.1	Thale cress	mitochondrion	22.43	11.45
PGSC0003DMT400008757	Potato	cytosol	17.76	11.45
KRH08607	Soybean	cytosol	19.94	11.41
Bra026401.1-P	Field mustard	plastid	19.0	11.4
PGSC0003DMT400056663	Potato	plastid	20.87	11.39
TraesCS1B01G075300.1	Wheat	cytosol	21.18	11.39
AT5G41170.1	Thale cress	mitochondrion	18.69	11.39
Bra028267.1-P	Field mustard	mitochondrion	22.12	11.34
PGSC0003DMT400053556	Potato	mitochondrion	16.2	11.33
Bra027026.1-P	Field mustard	mitochondrion	18.38	11.28
AT1G12620.1	Thale cress	cytosol, mitochondrion	21.81	11.27
Bra031731.1-P	Field mustard	mitochondrion	17.76	11.22
PGSC0003DMT400056665	Potato	mitochondrion	20.56	11.21
VIT_14s0081g00110.t01	Wine grape	cytosol	16.82	11.0
AT1G12300.1	Thale cress	mitochondrion	21.81	10.99
PGSC0003DMT400025067	Potato	cytosol	16.2	10.92
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.81	10.87
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.38	10.87
Solyc06g005220.2.1	Tomato	cytosol	13.71	10.84
KRH09085	Soybean	mitochondrion	23.68	10.8
PGSC0003DMT400052971	Potato	mitochondrion	19.94	10.79
Solyc04g080120.1.1	Tomato	extracellular	20.56	10.78
Bra026957.1-P	Field mustard	mitochondrion	20.25	10.78
AT1G62590.1	Thale cress	mitochondrion	21.18	10.73
Bra016762.1-P	Field mustard	mitochondrion	20.25	10.71
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.51	10.71
AT1G12700.2	Thale cress	cytosol	20.56	10.68
Bra026958.1-P	Field mustard	mitochondrion	21.18	10.68
KRH25652	Soybean	cytosol, golgi	17.76	10.56
PGSC0003DMT400015293	Potato	mitochondrion	19.94	10.49
PGSC0003DMT400015298	Potato	mitochondrion	19.94	10.49
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.58	10.48
Bra026954.1-P	Field mustard	mitochondrion	21.18	10.46
PGSC0003DMT400053182	Potato	cytosol	19.31	10.35
Bra026882.1-P	Field mustard	cytosol	17.13	10.3
AT1G62680.2	Thale cress	plastid	17.13	10.04
Bra027726.1-P	Field mustard	mitochondrion	14.64	9.98
TraesCS2B01G559900.1	Wheat	cytosol	16.51	9.78
KRH08599	Soybean	cytosol, plastid	19.94	9.57
AT1G64100.2	Thale cress	cytosol	23.99	9.55
TraesCS2B01G560300.1	Wheat	cytosol	16.51	9.31
Bra027636.1-P	Field mustard	cytosol	9.03	8.95
PGSC0003DMT400052977	Potato	cytosol	10.59	8.74
Bra027656.1-P	Field mustard	cytosol	23.99	8.18
KRH09082	Soybean	cytosol	10.28	8.09
KRH12873	Soybean	cytosol	17.45	8.05
KRH39064	Soybean	cytosol	23.68	7.84
Bra026884.1-P	Field mustard	cytosol	10.9	7.63
Bra016758.1-P	Field mustard	plastid	22.12	6.13
Bra026836.1-P	Field mustard	cytosol, mitochondrion	9.35	6.11
Bra027029.1-P	Field mustard	mitochondrion	4.05	5.35
Bra006187.1-P	Field mustard	plastid	3.74	4.12
PGSC0003DMT400008759	Potato	cytosol	2.18	2.19
VIT_14s0030g02260.t01	Wine grape	cytosol	1.87	1.35
TraesCS6B01G114300.1	Wheat	cytosol	1.25	1.03
TraesCS6B01G341800.2	Wheat	cytosol	0.31	0.25
CDX68679	Canola	cytosol	0.0	0.0
Solyc06g007810.1.1	Tomato	cytosol	0.0	0.0
TraesCS1B01G038600.1	Wheat	cytosol	0.0	0.0
TraesCS1B01G084800.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1B01G315500.1	EnsemblPlantsGene:TraesCS1B01G315500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:539932703..539933668

Molecular Weight (calculated)

35447.1 Da

IEP (calculated)

9.377

GRAVY (calculated)

-0.080

Length

321 amino acids

Sequence
(BLAST)

001: MPRRLPLALL PLHTKAMPRL SSTTPMSPLR LRLRARHSSS TSHSSRSWEP HTAFAAATER ARSGNLTPED AHHLFDELLR QANPVQERPL NNLLAALARA
101: PASAACSDGL ALAVNLFSRI SQGARCVAHP TACTYGILMD CCCRAHRLDL AFAFFGRLLR TGLKAGVIQV CTLLKGLCHA KRTDEALNVL LHRMTELGCT
201: PDVVAYNTVI HGFFKEGQVG KACSLFHEMA QQGVAPNLMT YTSVIDALCK AKAMDKAEYF LRQMVDNGVV PDNVTYNSLI HGYSSSGHWK EAVRVSKEMT
301: SRRVTADVHT YNMFMTFLCK H

Best Arabidopsis Sequence Match ( AT1G62720.1 )
(BLAST)

001: MRRSTTISIA SKANKFLNLC LLQKGNPVIV PFISRFWGRT FSTKRSSMNL EEEIDLFCKM IQSRPLPSIV DFSKVLSKIA KSKNYDLVIS LFHHMEVCGI
101: GHDLYSYNIV INCLCRCSRF VIALSVVGKM MKFGYEPDVV TVSSLINGFC QGNRVFDAID LVSKMEEMGF RPDVVIYNTI IDGSCKIGLV NDAVELFDRM
201: ERDGVRADAV TYNSLVAGLC CSGRWSDAAR LMRDMVMRDI VPNVITFTAV IDVFVKEGKF SEAMKLYEEM TRRCVDPDVF TYNSLINGLC MHGRVDEAKQ
301: MLDLMVTKGC LPDVVTYNTL INGFCKSKRV DEGTKLFREM AQRGLVGDTI TYNTIIQGYF QAGRPDAAQE IFSRMDSRPN IRTYSILLYG LCMNWRVEKA
401: LVLFENMQKS EIELDITTYN IVIHGMCKIG NVEDAWDLFR SLSCKGLKPD VVSYTTMISG FCRKRQWDKS DLLYRKMQED GLLPL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62720 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI78]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.