Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- plastid 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G137900.1 | |
| TraesCS4B01G148100.1 | |
| TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G62670.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
| AT1G62670.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
| AT1G62670.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G127400.1 | Wheat | cytosol, mitochondrion | 54.51 | 36.26 |
| TraesCS6A01G101100.1 | Wheat | mitochondrion, plastid | 59.38 | 34.0 |
| TraesCS6B01G127500.1 | Wheat | cytosol | 55.21 | 32.45 |
| TraesCS6B01G129200.1 | Wheat | cytosol, nucleus, plastid | 56.6 | 32.28 |
| TraesCS1B01G315500.1 | Wheat | mitochondrion | 34.38 | 30.84 |
| TraesCS6B01G021200.1 | Wheat | cytosol, mitochondrion | 28.12 | 24.92 |
| TraesCS6B01G021500.1 | Wheat | cytosol, mitochondrion | 30.56 | 23.22 |
| TraesCS2B01G560000.1 | Wheat | mitochondrion, plastid | 34.72 | 22.78 |
| TraesCS1B01G073200.1 | Wheat | cytosol | 23.96 | 22.77 |
| TraesCS1B01G092600.1 | Wheat | plastid | 39.93 | 22.24 |
| TraesCS1B01G072300.1 | Wheat | plastid | 39.24 | 19.89 |
| TraesCS6B01G127200.1 | Wheat | cytosol | 22.92 | 19.19 |
| TraesCS1B01G038200.1 | Wheat | mitochondrion | 35.42 | 16.11 |
| TraesCS1B01G086000.1 | Wheat | plastid | 37.85 | 15.89 |
| TraesCS1B01G092500.1 | Wheat | mitochondrion | 40.97 | 15.07 |
| TraesCS1B01G074600.1 | Wheat | mitochondrion, plastid | 40.28 | 14.87 |
| TraesCS1B01G071600.1 | Wheat | mitochondrion | 42.36 | 14.39 |
| KXG28799 | Sorghum | plastid | 36.81 | 13.95 |
| TraesCS1B01G085900.1 | Wheat | mitochondrion | 38.54 | 13.64 |
| TraesCS1B01G038300.1 | Wheat | plastid | 25.69 | 13.55 |
| Zm00001d007531_P001 | Maize | plastid | 38.19 | 13.51 |
| Zm00001d007548_P001 | Maize | plastid | 38.19 | 13.51 |
| Zm00001d007559_P001 | Maize | plastid | 38.19 | 13.46 |
| Zm00001d007555_P001 | Maize | plastid | 37.85 | 13.39 |
| TraesCS1B01G085300.1 | Wheat | mitochondrion | 36.81 | 13.38 |
| TraesCS1B01G072900.2 | Wheat | mitochondrion | 39.58 | 13.06 |
| TraesCS2B01G560700.1 | Wheat | plastid | 34.72 | 12.97 |
| TraesCS1B01G039200.1 | Wheat | mitochondrion | 34.38 | 12.63 |
| TraesCS1B01G038500.1 | Wheat | mitochondrion | 34.38 | 12.53 |
| TraesCS1B01G039100.1 | Wheat | mitochondrion | 32.64 | 12.01 |
| Zm00001d007534_P001 | Maize | plastid | 31.25 | 11.58 |
| TraesCS5B01G250800.1 | Wheat | cytosol, mitochondrion | 28.47 | 11.47 |
| TraesCS6B01G045200.1 | Wheat | cytosol, mitochondrion | 28.47 | 11.47 |
| TraesCS6B01G021600.1 | Wheat | mitochondrion | 28.12 | 11.31 |
| TraesCS1B01G075000.1 | Wheat | cytosol, mitochondrion | 25.35 | 10.99 |
| TraesCS1B01G072400.1 | Wheat | cytosol | 26.04 | 10.79 |
| TraesCS2B01G126900.1 | Wheat | cytosol | 13.89 | 10.47 |
| TraesCS7B01G469500.1 | Wheat | cytosol | 20.14 | 10.32 |
| AT1G62914.1 | Thale cress | mitochondrion | 18.06 | 9.85 |
| AT1G63400.1 | Thale cress | cytosol, plastid | 18.75 | 9.36 |
| AT1G63130.1 | Thale cress | mitochondrion | 20.14 | 9.21 |
| AT1G63080.3 | Thale cress | mitochondrion | 19.44 | 9.12 |
| AT1G63070.1 | Thale cress | mitochondrion | 18.4 | 8.98 |
| AT1G62930.1 | Thale cress | plastid | 19.44 | 8.9 |
| Bra016762.1-P | Field mustard | mitochondrion | 18.75 | 8.9 |
| TraesCS1B01G072700.1 | Wheat | cytosol | 15.62 | 8.82 |
| KRH09084 | Soybean | plastid | 15.62 | 8.81 |
| Bra028267.1-P | Field mustard | mitochondrion | 18.75 | 8.63 |
| AT1G63330.2 | Thale cress | cytosol | 16.67 | 8.59 |
| AT1G62670.1 | Thale cress | mitochondrion | 18.75 | 8.57 |
| VIT_14s0030g02280.t01 | Wine grape | plastid | 16.67 | 8.56 |
| AT1G12775.1 | Thale cress | cytosol, mitochondrion | 19.1 | 8.54 |
| AT1G62590.1 | Thale cress | mitochondrion | 18.75 | 8.52 |
| Bra021192.1-P | Field mustard | plastid | 14.58 | 8.33 |
| KRH09154 | Soybean | mitochondrion | 15.97 | 8.27 |
| KRH39050 | Soybean | mitochondrion | 15.28 | 8.27 |
| AT3G22470.1 | Thale cress | cytosol, mitochondrion | 17.71 | 8.24 |
| VIT_12s0028g02320.t01 | Wine grape | mitochondrion | 13.54 | 8.18 |
| KRH17148 | Soybean | mitochondrion | 15.28 | 8.07 |
| AT1G62910.1 | Thale cress | mitochondrion | 17.71 | 8.07 |
| KRH09097 | Soybean | plastid | 16.32 | 8.06 |
| AT1G12620.1 | Thale cress | cytosol, mitochondrion | 17.36 | 8.05 |
| Bra026958.1-P | Field mustard | mitochondrion | 17.71 | 8.01 |
| Bra026957.1-P | Field mustard | mitochondrion | 16.67 | 7.96 |
| AT1G63150.1 | Thale cress | mitochondrion | 17.36 | 7.95 |
| Bra026971.1-P | Field mustard | mitochondrion | 17.36 | 7.95 |
| AT1G12300.1 | Thale cress | mitochondrion | 17.36 | 7.85 |
| Bra026954.1-P | Field mustard | mitochondrion | 17.71 | 7.85 |
| KRH31646 | Soybean | cytosol | 13.89 | 7.72 |
| KRH09121 | Soybean | mitochondrion | 14.24 | 7.68 |
| KRH08636 | Soybean | cytosol | 13.89 | 7.66 |
| KRH39004 | Soybean | cytosol | 13.19 | 7.65 |
| KRH39054 | Soybean | cytosol | 13.19 | 7.65 |
| KRH08628 | Soybean | plastid | 14.58 | 7.61 |
| VIT_14s0081g00270.t01 | Wine grape | plastid | 15.28 | 7.59 |
| AT1G64100.2 | Thale cress | cytosol | 21.18 | 7.57 |
| KRH09095 | Soybean | plastid | 15.28 | 7.52 |
| KRH39057 | Soybean | cytosol | 12.85 | 7.44 |
| AT1G12700.2 | Thale cress | cytosol | 15.97 | 7.44 |
| KRH08639 | Soybean | mitochondrion, plastid | 14.58 | 7.43 |
| PGSC0003DMT400008757 | Potato | cytosol | 12.85 | 7.43 |
| KRH40513 | Soybean | plastid | 9.03 | 7.41 |
| KRH39066 | Soybean | cytosol | 14.24 | 7.39 |
| VIT_14s0081g00120.t01 | Wine grape | plastid | 14.93 | 7.38 |
| VIT_14s0081g00280.t01 | Wine grape | mitochondrion | 16.32 | 7.36 |
| AT3G16710.1 | Thale cress | mitochondrion | 12.85 | 7.3 |
| KRH08625 | Soybean | plastid | 14.58 | 7.29 |
| KRH39072 | Soybean | cytosol | 12.5 | 7.26 |
| KRH39074 | Soybean | cytosol | 12.5 | 7.24 |
| KRH39112 | Soybean | cytosol | 12.5 | 7.24 |
| KRH08277 | Soybean | plastid | 14.24 | 7.23 |
| KRH48615 | Soybean | mitochondrion | 13.54 | 7.16 |
| KRH08635 | Soybean | cytosol, golgi, mitochondrion, plastid | 12.5 | 7.13 |
| Solyc06g007300.1.1 | Tomato | extracellular | 14.58 | 7.09 |
| Solyc06g007280.2.1 | Tomato | cytosol | 6.25 | 7.06 |
| KRH00678 | Soybean | endoplasmic reticulum, extracellular, plastid | 12.85 | 7.05 |
| AT1G62720.1 | Thale cress | mitochondrion | 11.81 | 7.01 |
| KRH08607 | Soybean | cytosol | 13.54 | 6.95 |
| PGSC0003DMT400053185 | Potato | mitochondrion | 14.24 | 6.95 |
| Solyc06g007740.1.1 | Tomato | cytosol | 14.24 | 6.95 |
| AT5G16640.1 | Thale cress | mitochondrion | 12.15 | 6.94 |
| PGSC0003DMT400008760 | Potato | mitochondrion | 13.89 | 6.83 |
| PGSC0003DMT400056663 | Potato | plastid | 13.89 | 6.8 |
| PGSC0003DMT400053556 | Potato | mitochondrion | 10.76 | 6.75 |
| PGSC0003DMT400025074 | Potato | cytosol | 12.85 | 6.7 |
| KRH08671 | Soybean | cytosol, mitochondrion | 12.85 | 6.69 |
| KRH25652 | Soybean | cytosol, golgi | 12.5 | 6.67 |
| KRH41817 | Soybean | mitochondrion | 12.85 | 6.67 |
| AT4G26800.2 | Thale cress | mitochondrion, plastid | 11.81 | 6.61 |
| AT1G06580.1 | Thale cress | mitochondrion | 11.46 | 6.6 |
| KRH40400 | Soybean | plastid | 13.19 | 6.59 |
| Bra027726.1-P | Field mustard | mitochondrion | 10.76 | 6.58 |
| Bra026882.1-P | Field mustard | cytosol | 12.15 | 6.55 |
| KRH09085 | Soybean | mitochondrion | 15.97 | 6.53 |
| Bra027026.1-P | Field mustard | mitochondrion | 11.81 | 6.5 |
| PGSC0003DMT400025087 | Potato | endoplasmic reticulum | 11.11 | 6.46 |
| PGSC0003DMT400056665 | Potato | mitochondrion | 13.19 | 6.45 |
| Bra027658.1-P | Field mustard | cytosol, mitochondrion | 12.15 | 6.45 |
| PGSC0003DMT400052971 | Potato | mitochondrion | 13.19 | 6.41 |
| Bra026401.1-P | Field mustard | plastid | 11.81 | 6.36 |
| PGSC0003DMT400053182 | Potato | cytosol | 13.19 | 6.34 |
| AT5G41170.1 | Thale cress | mitochondrion | 11.46 | 6.26 |
| Bra031731.1-P | Field mustard | mitochondrion | 10.76 | 6.1 |
| Bra036651.1-P | Field mustard | mitochondrion | 11.11 | 5.98 |
| AT1G64580.1 | Thale cress | mitochondrion | 10.76 | 5.93 |
| AT1G64583.1 | Thale cress | mitochondrion | 10.42 | 5.86 |
| KRH08599 | Soybean | cytosol, plastid | 13.54 | 5.83 |
| TraesCS1B01G085400.1 | Wheat | cytosol | 12.85 | 5.77 |
| Solyc04g080120.1.1 | Tomato | extracellular | 12.15 | 5.72 |
| PGSC0003DMT400025067 | Potato | cytosol | 9.38 | 5.67 |
| Bra025516.1-P | Field mustard | cytosol, mitochondrion | 9.38 | 5.66 |
| AT1G62680.2 | Thale cress | plastid | 10.76 | 5.66 |
| Bra036649.1-P | Field mustard | cytosol | 7.64 | 5.63 |
| Bra026836.1-P | Field mustard | cytosol, mitochondrion | 9.38 | 5.5 |
| VIT_14s0081g00110.t01 | Wine grape | cytosol | 9.38 | 5.5 |
| PGSC0003DMT400015293 | Potato | mitochondrion | 11.46 | 5.41 |
| PGSC0003DMT400015298 | Potato | mitochondrion | 11.46 | 5.41 |
| Bra027656.1-P | Field mustard | cytosol | 17.36 | 5.31 |
| Bra026884.1-P | Field mustard | cytosol | 7.64 | 4.79 |
| TraesCS1B01G038400.1 | Wheat | cytosol | 9.03 | 4.28 |
| KRH39064 | Soybean | cytosol | 14.24 | 4.23 |
| KRH12873 | Soybean | cytosol | 10.07 | 4.17 |
| Bra016758.1-P | Field mustard | plastid | 16.32 | 4.06 |
| TraesCS1B01G073100.1 | Wheat | cytosol | 7.99 | 3.8 |
| TraesCS1B01G039700.1 | Wheat | cytosol | 7.99 | 3.78 |
| TraesCS1B01G075300.1 | Wheat | cytosol | 7.29 | 3.52 |
| Solyc06g005220.2.1 | Tomato | cytosol | 4.86 | 3.45 |
| Bra006187.1-P | Field mustard | plastid | 2.08 | 2.06 |
| KRH09082 | Soybean | cytosol | 2.43 | 1.72 |
| TraesCS2B01G559900.1 | Wheat | cytosol | 3.12 | 1.66 |
| TraesCS2B01G560300.1 | Wheat | cytosol | 3.12 | 1.58 |
| PGSC0003DMT400052977 | Potato | cytosol | 1.74 | 1.29 |
| KXG35774 | Sorghum | cytosol, mitochondrion | 2.08 | 1.27 |
| Bra027636.1-P | Field mustard | cytosol | 1.04 | 0.93 |
| VIT_14s0030g02260.t01 | Wine grape | cytosol | 0.69 | 0.45 |
| Bra027029.1-P | Field mustard | mitochondrion | 0.0 | 0.0 |
| CDX68679 | Canola | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400008759 | Potato | cytosol | 0.0 | 0.0 |
| Solyc06g007810.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| TraesCS1B01G038600.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS1B01G084800.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS6B01G114300.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS6B01G341800.2 | Wheat | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G129100.1 | EnsemblPlantsGene:TraesCS6B01G129100 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF874 |
| PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | SEG:seg | TIGRFAMs:TIGR00756 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:125335981..125336954
Molecular Weight (calculated)
31587.8 Da
IEP (calculated)
8.183
GRAVY (calculated)
0.023
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRLEMKFSA VPSLVECLTS VCHPPSRGLS SPTRSHIRHC RKEQDLPRLT NQLLNSSGSS QANQLLNKLN DHLGSGMLRP ELAHQLFDKL FPQTVPVSAD
101: ALNVLFSALA CGLPSAACND GPALAIALFK HMARARCRQV MAPTNHTYNT LIECCHMTHR PDIGPAFFGL LLKTGITADV FTFNSLLKCL CDMKQSDEAL
201: GMLLHRMPGD MPDVISYSVI IKSFCDNGRS QRALDLLRMM TKKGSDHSPN VVSYTIIIGG LIKEGELSKA CALFHEMMQQ GVVPDVVT
101: ALNVLFSALA CGLPSAACND GPALAIALFK HMARARCRQV MAPTNHTYNT LIECCHMTHR PDIGPAFFGL LLKTGITADV FTFNSLLKCL CDMKQSDEAL
201: GMLLHRMPGD MPDVISYSVI IKSFCDNGRS QRALDLLRMM TKKGSDHSPN VVSYTIIIGG LIKEGELSKA CALFHEMMQQ GVVPDVVT
001: MGSKVMMFKW SKNITPSQVI KLMRAEKDVE KSMAVFDSAT AEYANGYVHD QSSFGYMVLR LVSANKFKAA EDLIVRMKIE NCVVSEDILL SICRGYGRVH
101: RPFDSLRVFH KMKDFDCDPS QKAYVTVLAI LVEENQLNLA FKFYKNMREI GLPPTVASLN VLIKALCRND GTVDAGLKIF LEMPKRGCDP DSYTYGTLIS
201: GLCRFGRIDE AKKLFTEMVE KDCAPTVVTY TSLINGLCGS KNVDEAMRYL EEMKSKGIEP NVFTYSSLMD GLCKDGRSLQ AMELFEMMMA RGCRPNMVTY
301: TTLITGLCKE QKIQEAVELL DRMNLQGLKP DAGLYGKVIS GFCAISKFRE AANFLDEMIL GGITPNRLTW NIHVKTSNEV VRGLCANYPS RAFTLYLSMR
401: SRGISVEVET LESLVKCLCK KGEFQKAVQL VDEIVTDGCI PSKGTWKLLI GHTLDKTIVG EASDTLLRDL DI
101: RPFDSLRVFH KMKDFDCDPS QKAYVTVLAI LVEENQLNLA FKFYKNMREI GLPPTVASLN VLIKALCRND GTVDAGLKIF LEMPKRGCDP DSYTYGTLIS
201: GLCRFGRIDE AKKLFTEMVE KDCAPTVVTY TSLINGLCGS KNVDEAMRYL EEMKSKGIEP NVFTYSSLMD GLCKDGRSLQ AMELFEMMMA RGCRPNMVTY
301: TTLITGLCKE QKIQEAVELL DRMNLQGLKP DAGLYGKVIS GFCAISKFRE AANFLDEMIL GGITPNRLTW NIHVKTSNEV VRGLCANYPS RAFTLYLSMR
401: SRGISVEVET LESLVKCLCK KGEFQKAVQL VDEIVTDGCI PSKGTWKLLI GHTLDKTIVG EASDTLLRDL DI
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g46100 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNL2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.