Factsheet for Zm00001d007559_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013757_P010
Zm00001d033159_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT1G62670.1	Zm00001d033159_P001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007548_P001	Maize	plastid	99.14	99.51
Zm00001d007534_P001	Maize	plastid	91.92	96.65
Zm00001d007555_P001	Maize	plastid	96.08	96.44
Zm00001d007531_P001	Maize	plastid	95.84	96.19
KXG28799	Sorghum	plastid	74.66	80.26
KXG35774	Sorghum	cytosol, mitochondrion	40.39	69.77
TraesCS2B01G126900.1	Wheat	cytosol	28.64	61.26
TraesCS1D01G058500.1	Wheat	plastid	41.86	60.0
TraesCS1B01G038400.1	Wheat	cytosol	44.06	59.21
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	49.94	58.54
TraesCS1A01G031600.1	Wheat	cytosol	47.37	58.46
TraesCS1D01G058400.1	Wheat	cytosol	36.84	58.45
TraesCS1D01G076700.1	Wheat	cytosol	23.87	58.38
TraesCS1B01G039700.1	Wheat	cytosol	43.08	57.89
TraesCS1A01G055600.1	Wheat	cytosol	23.01	57.85
TraesCS1D01G076500.1	Wheat	mitochondrion	46.63	57.38
TraesCS1B01G085900.1	Wheat	mitochondrion	56.79	57.0
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	54.83	56.92
TraesCS6B01G341800.2	Wheat	cytosol	27.78	56.89
TraesCS1D01G058000.1	Wheat	cytosol	28.15	56.65
TraesCS1B01G075300.1	Wheat	cytosol	41.37	56.62
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	48.35	56.51
TraesCS1A01G067800.1	Wheat	cytosol	25.83	56.42
TraesCS1B01G072400.1	Wheat	cytosol	47.98	56.4
TraesCS1A01G067600.1	Wheat	mitochondrion	56.06	56.33
TraesCS1D01G068900.1	Wheat	mitochondrion	56.06	56.33
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	53.73	56.28
TraesCS1A01G054700.2	Wheat	mitochondrion	55.94	56.28
TraesCS1D01G068700.1	Wheat	cytosol	30.23	56.26
TraesCS1D01G068400.1	Wheat	mitochondrion	56.67	56.26
TraesCS1D01G056200.1	Wheat	mitochondrion	56.79	56.24
TraesCS1B01G039100.1	Wheat	mitochondrion	53.86	56.19
TraesCS1D01G033000.1	Wheat	cytosol	27.78	56.19
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	54.47	56.19
TraesCS1A01G067400.1	Wheat	mitochondrion	56.67	56.12
TraesCS1B01G038500.1	Wheat	mitochondrion	54.22	56.08
TraesCS1A01G056000.1	Wheat	cytosol	27.54	55.97
TraesCS1B01G039200.1	Wheat	mitochondrion	53.61	55.87
HORVU1Hr1G013810.1	Barley	plastid	57.28	55.78
TraesCS1A01G055800.1	Wheat	mitochondrion	52.63	55.77
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	45.9	55.72
TraesCS1D01G057700.1	Wheat	cytosol	22.15	55.69
TraesCS1B01G092500.1	Wheat	mitochondrion	53.37	55.68
TraesCS1D01G055300.1	Wheat	cytosol	42.11	55.66
TraesCS6D01G290900.1	Wheat	mitochondrion	49.94	55.66
TraesCS1A01G073700.1	Wheat	cytosol	26.19	55.58
HORVU1Hr1G011020.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.45	55.56
TraesCS1D01G056600.1	Wheat	mitochondrion	13.71	55.45
TraesCS1D01G068500.1	Wheat	mitochondrion	55.08	55.42
TraesCS1D01G068800.1	Wheat	plastid	55.32	55.39
TraesCS1B01G085400.1	Wheat	cytosol	43.45	55.38
TraesCS6A01G311600.1	Wheat	mitochondrion	56.55	55.26
HORVU1Hr1G014040.1	Barley	mitochondrion	56.3	55.22
TraesCS1D01G056700.1	Wheat	cytosol	41.0	55.19
TraesCS1B01G038300.1	Wheat	plastid	36.84	55.13
TraesCS1B01G038600.1	Wheat	cytosol	24.48	55.1
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	48.35	55.09
TraesCS1A01G054800.1	Wheat	cytosol	39.17	54.98
TraesCS1B01G038200.1	Wheat	mitochondrion	42.59	54.98
TraesCS1A01G054500.1	Wheat	mitochondrion	52.39	54.87
TraesCS1A01G055500.1	Wheat	mitochondrion	14.57	54.84
TraesCS1D01G057800.1	Wheat	mitochondrion	24.36	54.82
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	44.55	54.82
TraesCS1B01G085300.1	Wheat	mitochondrion	53.12	54.8
HORVU6Hr1G076780.7	Barley	mitochondrion	55.2	54.73
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	55.57	54.7
TraesCS1A01G073800.1	Wheat	mitochondrion	22.28	54.65
HORVU1Hr1G004750.6	Barley	plastid	53.37	54.64
TraesCS1B01G073100.1	Wheat	cytosol	40.39	54.46
TraesCS1A01G031700.1	Wheat	plastid	49.33	54.39
HORVU1Hr1G010970.1	Barley	mitochondrion	54.96	54.36
HORVU0Hr1G035310.1	Barley	cytosol	38.68	54.3
TraesCS1D01G076400.1	Wheat	cytosol	24.11	54.27
TraesCS1A01G073600.1	Wheat	mitochondrion	25.95	54.08
TraesCS1D01G067600.1	Wheat	cytosol	24.11	53.97
TraesCS1A01G067000.1	Wheat	mitochondrion	47.25	53.91
TraesCS1B01G315500.1	Wheat	mitochondrion	21.18	53.89
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	22.52	53.8
TraesCS1A01G067700.1	Wheat	extracellular	22.15	53.71
HORVU1Hr1G010990.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.46	53.54
TraesCS1B01G073200.1	Wheat	cytosol	19.83	53.47
TraesCS1B01G084800.1	Wheat	cytosol	30.36	53.45
TraesCS1A01G057300.1	Wheat	cytosol	46.88	53.34
HORVU6Hr1G017870.2	Barley	mitochondrion	19.46	53.0
TraesCS1B01G086000.1	Wheat	plastid	44.43	52.92
TraesCS1A01G066600.1	Wheat	mitochondrion	17.01	52.85
TraesCS6B01G127200.1	Wheat	cytosol	22.15	52.62
TraesCS1D01G069100.1	Wheat	mitochondrion	41.25	52.41
TraesCS6D01G083300.1	Wheat	mitochondrion	28.52	52.24
HORVU1Hr1G011250.1	Barley	cytosol	18.85	52.2
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	14.57	52.19
HORVU0Hr1G031920.1	Barley	plastid	54.83	52.09
HORVU1Hr1G011400.44	Barley	plastid	38.92	51.62
TraesCS1D01G068600.1	Wheat	plastid	21.42	51.47
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	30.48	51.45
TraesCS1B01G071600.1	Wheat	mitochondrion	53.24	51.3
TraesCS1B01G092600.1	Wheat	plastid	32.44	51.26
TraesCS1B01G072900.2	Wheat	mitochondrion	54.59	51.09
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	31.46	50.89
TraesCS1D01G076900.1	Wheat	plastid	40.88	50.84
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	23.38	50.53
TraesCS6D01G083400.1	Wheat	mitochondrion	30.48	50.51
TraesCS6B01G127500.1	Wheat	cytosol	30.23	50.41
HORVU1Hr1G011160.2	Barley	cytosol, plastid	55.08	50.28
TraesCS1B01G072700.1	Wheat	cytosol	31.33	50.2
TraesCS1A01G074000.1	Wheat	mitochondrion	17.38	50.18
TraesCS1B01G072300.1	Wheat	plastid	34.88	50.18
HORVU1Hr1G011150.1	Barley	cytosol, plastid	54.22	50.17
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	26.56	50.12
HORVU1Hr1G014060.1	Barley	plastid	54.47	50.0
TraesCS6D01G083100.1	Wheat	cytosol	29.99	50.0
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	30.6	49.7
HORVU1Hr1G010890.5	Barley	cytosol	53.98	49.11
HORVU2Hr1G105460.11	Barley	mitochondrion, plastid	28.64	48.75
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	28.52	48.44
HORVU1Hr1G011300.3	Barley	plastid	54.22	48.15
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	44.8	47.78
Zm00001d018982_P001	Maize	mitochondrion	20.44	47.71
Zm00001d009733_P001	Maize	cytosol	44.31	45.53
Os04t0351333-00	Rice	cytosol	46.02	42.78
Os04t0349600-01	Rice	plastid	19.58	41.34
TraesCS6B01G129100.1	Wheat	cytosol, plastid	13.46	38.19
Zm00001d009735_P001	Maize	cytosol	44.19	37.1
Solyc06g007280.2.1	Tomato	cytosol	10.89	34.9
Bra027636.1-P	Field mustard	cytosol	12.73	32.1
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.24	31.24
KRH40513	Soybean	plastid	13.1	30.48
AT1G63330.2	Thale cress	cytosol	20.81	30.41
KRH39074	Soybean	cytosol	18.36	30.18
PGSC0003DMT400008759	Potato	cytosol	11.75	30.09
PGSC0003DMT400052977	Potato	cytosol	14.2	29.82
Solyc06g005220.2.1	Tomato	cytosol	14.81	29.8
KRH39004	Soybean	cytosol	18.12	29.78
KRH39057	Soybean	cytosol	18.12	29.78
VIT_14s0081g00110.t01	Wine grape	cytosol	17.87	29.74
Bra021192.1-P	Field mustard	plastid	18.24	29.56
Bra006187.1-P	Field mustard	plastid	10.53	29.55
KRH39072	Soybean	cytosol	17.87	29.44
KRH39112	Soybean	cytosol	17.87	29.38
KRH39054	Soybean	cytosol	17.75	29.18
Bra036649.1-P	Field mustard	cytosol	13.83	28.9
Bra026884.1-P	Field mustard	cytosol	16.03	28.54
Bra027029.1-P	Field mustard	mitochondrion	8.45	28.4
KRH09084	Soybean	plastid	17.75	28.38
AT1G62930.1	Thale cress	plastid	21.66	28.14
AT1G63130.1	Thale cress	mitochondrion	21.66	28.1
AT1G63080.3	Thale cress	mitochondrion	21.05	28.01
PGSC0003DMT400025067	Potato	cytosol	16.28	27.94
AT1G63400.1	Thale cress	cytosol, plastid	19.71	27.9
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.89	27.88
AT5G16640.1	Thale cress	mitochondrion	17.14	27.78
AT1G64580.1	Thale cress	mitochondrion	17.75	27.72
Bra026882.1-P	Field mustard	cytosol	18.12	27.72
PGSC0003DMT400008757	Potato	cytosol	16.89	27.71
Bra036651.1-P	Field mustard	mitochondrion	18.12	27.66
AT1G62670.1	Thale cress	mitochondrion	21.3	27.62
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.75	27.62
AT1G62590.1	Thale cress	mitochondrion	21.42	27.6
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.03	27.46
VIT_14s0081g00270.t01	Wine grape	plastid	19.46	27.41
Bra026971.1-P	Field mustard	mitochondrion	21.05	27.34
AT1G63070.1	Thale cress	mitochondrion	19.71	27.29
VIT_14s0081g00120.t01	Wine grape	plastid	19.46	27.27
Solyc06g007810.1.1	Tomato	cytosol	8.94	27.24
AT3G16710.1	Thale cress	mitochondrion	16.89	27.22
AT1G62910.1	Thale cress	mitochondrion	21.05	27.22
AT1G62914.1	Thale cress	mitochondrion	17.5	27.08
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.99	27.07
KRH41817	Soybean	mitochondrion	18.36	27.03
AT1G12300.1	Thale cress	mitochondrion	21.05	27.0
KRH17148	Soybean	mitochondrion	17.99	26.97
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	16.65	26.93
KRH31646	Soybean	cytosol	17.01	26.83
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.32	26.82
PGSC0003DMT400025074	Potato	cytosol	18.12	26.81
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.2	26.57
Bra028267.1-P	Field mustard	mitochondrion	20.32	26.52
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.81	26.4
KRH39066	Soybean	cytosol	17.87	26.31
KRH08636	Soybean	cytosol	16.77	26.25
KRH09154	Soybean	mitochondrion	17.75	26.08
AT1G63150.1	Thale cress	mitochondrion	20.07	26.07
KRH48615	Soybean	mitochondrion	17.38	26.05
KRH09082	Soybean	cytosol	12.97	25.98
AT1G64583.1	Thale cress	mitochondrion	16.28	25.98
AT1G62680.2	Thale cress	plastid	17.38	25.91
KRH08628	Soybean	plastid	17.5	25.91
KRH08639	Soybean	mitochondrion, plastid	17.87	25.84
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.2	25.82
AT1G62720.1	Thale cress	mitochondrion	15.3	25.77
Bra027726.1-P	Field mustard	mitochondrion	14.81	25.69
Solyc06g007300.1.1	Tomato	extracellular	18.6	25.68
KRH09121	Soybean	mitochondrion	16.77	25.66
PGSC0003DMT400053185	Potato	mitochondrion	18.48	25.59
Bra026958.1-P	Field mustard	mitochondrion	19.95	25.59
KRH08671	Soybean	cytosol, mitochondrion	17.26	25.5
PGSC0003DMT400056665	Potato	mitochondrion	18.36	25.47
Solyc06g007740.1.1	Tomato	cytosol	18.36	25.42
AT1G06580.1	Thale cress	mitochondrion	15.54	25.4
KRH08277	Soybean	plastid	17.63	25.4
KRH25652	Soybean	cytosol, golgi	16.77	25.37
VIT_14s0030g02280.t01	Wine grape	plastid	17.38	25.31
CDX68679	Canola	cytosol	3.55	25.22
Bra031731.1-P	Field mustard	mitochondrion	15.67	25.2
KRH39050	Soybean	mitochondrion	16.4	25.19
PGSC0003DMT400056663	Potato	plastid	18.12	25.17
AT5G41170.1	Thale cress	mitochondrion	16.16	25.05
Bra016762.1-P	Field mustard	mitochondrion	18.6	25.04
Bra027026.1-P	Field mustard	mitochondrion	15.91	24.86
KRH08625	Soybean	plastid	17.5	24.83
KRH08607	Soybean	cytosol	17.01	24.78
AT1G12700.2	Thale cress	cytosol	18.73	24.76
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.81	24.64
KRH40400	Soybean	plastid	17.38	24.61
VIT_14s0030g02260.t01	Wine grape	cytosol	13.1	24.15
PGSC0003DMT400052971	Potato	mitochondrion	17.5	24.11
Bra026957.1-P	Field mustard	mitochondrion	17.75	24.05
Solyc04g080120.1.1	Tomato	extracellular	17.87	23.86
Bra026954.1-P	Field mustard	mitochondrion	18.97	23.85
PGSC0003DMT400015293	Potato	mitochondrion	17.75	23.77
PGSC0003DMT400015298	Potato	mitochondrion	17.75	23.77
KRH09097	Soybean	plastid	16.89	23.67
KRH09095	Soybean	plastid	16.89	23.59
PGSC0003DMT400008760	Potato	mitochondrion	16.77	23.38
PGSC0003DMT400053556	Potato	mitochondrion	13.1	23.31
PGSC0003DMT400053182	Potato	cytosol	17.01	23.21
AT4G26800.2	Thale cress	mitochondrion, plastid	14.57	23.15
Bra026401.1-P	Field mustard	plastid	15.06	22.99
KRH08599	Soybean	cytosol, plastid	18.12	22.12
KRH09085	Soybean	mitochondrion	18.6	21.59
AT1G64100.2	Thale cress	cytosol	21.18	21.46
Bra027656.1-P	Field mustard	cytosol	22.89	19.87
KRH12873	Soybean	cytosol	15.42	18.1
KRH39064	Soybean	cytosol	18.97	16.0
Bra016758.1-P	Field mustard	plastid	18.85	13.29

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1D6F774	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM27090.1	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF874	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000843EF1D	EnsemblPlantsGene:Zm00001d007559	EnsemblPlants:Zm00001d007559_P001	EnsemblPlants:Zm00001d007559_T001	SEG:seg

Description

PPR-817

Coordinates

chr2:-:234886402..234888855

Molecular Weight (calculated)

90999.5 Da

IEP (calculated)

8.003

GRAVY (calculated)

0.042

Length

817 amino acids

Sequence
(BLAST)

001: MPSCARISSA VSTAAASSSS PPPHPPPRCR RRILAAATAR VREGTLRPEE AHDLLDELQR RGTPVLERDL NGFLAALARA PSSAACRSGP ALAVALFNRA
101: ASRAQGPRVL SPTSHTYAIL MDCCTRAHRP ELALAFFGQL LRTGLRVNII IANHLLEGFC EAKRTDEALD ILLHRTPELG CVPDVFSYSI LLKSLCDQGK
201: SGQADDLLRM MAEGGAVCSP NVVAYNTVID GFFKEGDVNK ACDLFKEMVQ RGIPPDLVTY NSVVHALCKA RAMDKAEAFL RQMVNKRVLP NNWTYNNLIY
301: GYSSTGQWKE AVRVFKEMRR HSILPDVVTL SMLMGSLCKY GKIKEARDVF DTMAMKGQNP DVFSYNIMLN GYATKGCLVD MTDLFDLMLG DGIAPDFYTF
401: NVLIKAYANC GMLDKAMIIF NEMRDHGVKP DVVTYRTVIA ALCRIGKMDD AMEKFNQMID QGVAPDKYAY NCLIQGFCTH GSLLKAKELI SEIMNNGMHL
501: DIVFFSSIIN NLCKLGRVMD AQNIFDLTVN VGLHPDAVVY SMLMDGYCLV GKMEKALRVF DAMVSAGIEP NVVVYCTLVN GYCKIGRIDE GLSLFREMLQ
601: RGIKPSTILY SIIIDGLFQA GRTVPAKMKF HEMTESGIAM DICTYNIVLR GLFKNRCFDE AIFLFKELRA MNVKINIITL NTMIDGMFQT RRVEEAKDLF
701: ASISRSRLVP NVVTYSIMIT NLIKEGLVEE AEDMFSSMQN AGCEPNSRLL NHVVRELLKK NEIVRAGAYL SKIDERNFSL EHLTAMLLVD LFSSKGTCRE
801: QIRFLPAKYH FLAEASP

Best Arabidopsis Sequence Match ( AT1G62930.1 )
(BLAST)

001: MTSCVHLGIV ASQSKKMSLA KRFAQLRKAS PLFSLRGVYF SAASYDYREK LSRNVLLDLK LDDAVDLFGE MVQSRPLPSI VEFNKLLSAI AKMNKFDLVI
101: SLGERMQNLR ISYDLYSYNI LINCFCRRSQ LPLALAVLGK MMKLGYEPDI VTLSSLLNGY CHGKRISEAV ALVDQMFVME YQPNTVTFNT LIHGLFLHNK
201: ASEAVALIDR MVARGCQPDL FTYGTVVNGL CKRGDIDLAL SLLKKMEKGK IEADVVIYTT IIDALCNYKN VNDALNLFTE MDNKGIRPNV VTYNSLIRCL
301: CNYGRWSDAS RLLSDMIERK INPNVVTFSA LIDAFVKEGK LVEAEKLYDE MIKRSIDPDI FTYSSLINGF CMHDRLDEAK HMFELMISKD CFPNVVTYNT
401: LIKGFCKAKR VEEGMELFRE MSQRGLVGNT VTYNTLIQGL FQAGDCDMAQ KIFKKMVSDG VPPDIITYSI LLDGLCKYGK LEKALVVFEY LQKSKMEPDI
501: YTYNIMIEGM CKAGKVEDGW DLFCSLSLKG VKPNVIIYTT MISGFCRKGL KEEADALFRE MKEDGTLPNS GTYNTLIRAR LRDGDKAASA ELIKEMRSCG
601: FVGDASTISM VINMLHDGRL EKSYLEMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62930, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.