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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G62670.1 HORVU4Hr1G035250.1 AT4G26630.1 25387881
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU0Hr1G035310.1 Barley cytosol 67.67 100.0
HORVU1Hr1G010990.1 Barley cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 34.42 99.66
HORVU1Hr1G011250.1 Barley cytosol 31.86 92.88
HORVU1Hr1G010890.5 Barley cytosol 95.93 91.87
HORVU2Hr1G105460.11 Barley mitochondrion, plastid 51.05 91.46
HORVU1Hr1G011020.4 Barley cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 67.33 90.61
HORVU1Hr1G011160.2 Barley cytosol, plastid 93.26 89.61
HORVU1Hr1G011300.3 Barley plastid 95.12 88.91
HORVU1Hr1G010970.1 Barley mitochondrion 83.6 87.05
HORVU1Hr1G011150.1 Barley cytosol, plastid 88.84 86.52
HORVU1Hr1G014030.2 Barley mitochondrion, plastid 68.02 70.48
HORVU1Hr1G014040.1 Barley mitochondrion 66.63 68.79
HORVU1Hr1G013810.1 Barley plastid 66.63 68.3
HORVU1Hr1G011400.44 Barley plastid 47.79 66.72
HORVU6Hr1G076780.7 Barley mitochondrion 63.6 66.38
HORVU1Hr1G014060.1 Barley plastid 66.05 63.82
HORVU7Hr1G029840.1 Barley cytosol, mitochondrion 49.65 61.09
HORVU1Hr1G004750.6 Barley plastid 55.7 60.03
HORVU6Hr1G017870.2 Barley mitochondrion 19.77 56.67
KXG28799 Sorghum plastid 49.42 55.92
Zm00001d007548_P001 Maize plastid 52.09 55.04
Zm00001d007531_P001 Maize plastid 51.98 54.91
Zm00001d007555_P001 Maize plastid 51.98 54.91
Zm00001d007559_P001 Maize plastid 52.09 54.83
Zm00001d007534_P001 Maize plastid 49.19 54.44
Os04t0350000-02 Rice cytosol, mitochondrion, plastid 46.98 52.74
KXG35774 Sorghum cytosol, mitochondrion 28.26 51.37
HORVU1Hr1G018190.2 Barley cytosol 16.28 49.12
Os04t0351333-00 Rice cytosol 46.98 45.96
Os04t0349600-01 Rice plastid 20.47 45.48
HORVU6Hr1G014310.1 Barley mitochondrion 35.0 43.81
HORVU6Hr1G002890.6 Barley cytosol, plastid 38.02 41.13
Solyc06g007280.2.1 Tomato cytosol 10.47 35.29
KRH39054 Soybean cytosol 19.42 33.6
KRH39112 Soybean cytosol 19.42 33.6
KRH39004 Soybean cytosol 19.19 33.2
KRH39057 Soybean cytosol 18.84 32.6
KRH39074 Soybean cytosol 18.72 32.39
KRH39072 Soybean cytosol 18.6 32.26
PGSC0003DMT400052977 Potato cytosol 14.19 31.36
KRH09084 Soybean plastid 18.49 31.12
KRH40513 Soybean plastid 12.56 30.77
Solyc06g005220.2.1 Tomato cytosol 14.42 30.54
KRH08636 Soybean cytosol 18.49 30.46
KRH39066 Soybean cytosol 19.65 30.45
VIT_14s0081g00110.t01 Wine grape cytosol 17.21 30.14
VIT_12s0028g02320.t01 Wine grape mitochondrion 16.63 29.98
Bra026884.1-P Field mustard cytosol 15.93 29.85
KRH17148 Soybean mitochondrion 18.84 29.72
KRH48615 Soybean mitochondrion 18.84 29.72
KRH08635 Soybean cytosol, golgi, mitochondrion, plastid 17.33 29.5
KRH09121 Soybean mitochondrion 18.26 29.4
AT5G16640.1 Thale cress mitochondrion 17.21 29.37
KRH09154 Soybean mitochondrion 18.84 29.14
Bra027636.1-P Field mustard cytosol 10.93 29.01
AT1G63330.2 Thale cress cytosol 18.84 28.98
Bra036649.1-P Field mustard cytosol 13.14 28.9
Bra026882.1-P Field mustard cytosol 17.91 28.84
VIT_14s0081g00120.t01 Wine grape plastid 19.53 28.82
CDX68679 Canola cytosol 3.84 28.7
KRH08639 Soybean mitochondrion, plastid 18.84 28.67
KRH08628 Soybean plastid 18.37 28.62
KRH08277 Soybean plastid 18.84 28.57
KRH08671 Soybean cytosol, mitochondrion 18.37 28.57
PGSC0003DMT400008759 Potato cytosol 10.58 28.53
KRH00678 Soybean endoplasmic reticulum, extracellular, plastid 17.33 28.38
KRH09082 Soybean cytosol 13.37 28.19
Bra006187.1-P Field mustard plastid 9.53 28.18
AT1G63130.1 Thale cress mitochondrion 20.58 28.1
Solyc06g007300.1.1 Tomato extracellular 19.3 28.04
KRH08607 Soybean cytosol 18.26 27.99
KRH08625 Soybean plastid 18.72 27.95
AT3G22470.1 Thale cress cytosol, mitochondrion 20.12 27.95
AT1G63070.1 Thale cress mitochondrion 19.07 27.8
KRH41817 Soybean mitochondrion 17.91 27.75
PGSC0003DMT400025074 Potato cytosol 17.79 27.72
AT1G12620.1 Thale cress cytosol, mitochondrion 20.0 27.7
AT1G12300.1 Thale cress mitochondrion 20.47 27.63
AT3G16710.1 Thale cress mitochondrion 16.28 27.61
Solyc06g007810.1.1 Tomato cytosol 8.6 27.61
KRH25652 Soybean cytosol, golgi 17.33 27.59
Bra021192.1-P Field mustard plastid 16.16 27.58
Bra027029.1-P Field mustard mitochondrion 7.79 27.57
Solyc06g007740.1.1 Tomato cytosol 18.84 27.46
VIT_14s0081g00270.t01 Wine grape plastid 18.37 27.24
AT1G62930.1 Thale cress plastid 19.88 27.19
Bra031731.1-P Field mustard mitochondrion 16.05 27.17
Bra028267.1-P Field mustard mitochondrion 19.77 27.16
AT1G62670.1 Thale cress mitochondrion 19.88 27.14
PGSC0003DMT400008757 Potato cytosol 15.7 27.11
PGSC0003DMT400025087 Potato endoplasmic reticulum 15.58 27.07
AT1G62910.1 Thale cress mitochondrion 19.77 26.9
AT1G63080.3 Thale cress mitochondrion 19.19 26.87
Bra026971.1-P Field mustard mitochondrion 19.65 26.87
KRH40400 Soybean plastid 18.02 26.86
AT1G62590.1 Thale cress mitochondrion 19.77 26.81
KRH39050 Soybean mitochondrion 16.51 26.69
Bra016762.1-P Field mustard mitochondrion 18.84 26.69
Bra026958.1-P Field mustard mitochondrion 19.77 26.69
Bra025516.1-P Field mustard cytosol, mitochondrion 14.77 26.62
PGSC0003DMT400053185 Potato mitochondrion 18.26 26.61
Bra027026.1-P Field mustard mitochondrion 16.16 26.58
VIT_14s0030g02280.t01 Wine grape plastid 17.33 26.56
AT1G12775.1 Thale cress cytosol, mitochondrion 19.88 26.55
AT1G63150.1 Thale cress mitochondrion 19.42 26.55
PGSC0003DMT400025067 Potato cytosol 14.65 26.47
PGSC0003DMT400008760 Potato mitochondrion 18.02 26.45
AT1G62720.1 Thale cress mitochondrion 14.88 26.39
PGSC0003DMT400056663 Potato plastid 18.02 26.36
Bra036651.1-P Field mustard mitochondrion 16.4 26.36
AT1G62914.1 Thale cress mitochondrion 16.16 26.33
Bra026954.1-P Field mustard mitochondrion 19.88 26.31
PGSC0003DMT400052971 Potato mitochondrion 18.14 26.31
AT1G12700.2 Thale cress cytosol 18.84 26.21
KRH31646 Soybean cytosol 15.7 26.06
KRH09097 Soybean plastid 17.56 25.9
AT1G63400.1 Thale cress cytosol, plastid 17.33 25.82
VIT_14s0081g00280.t01 Wine grape mitochondrion 19.19 25.82
AT1G64580.1 Thale cress mitochondrion 15.7 25.81
KRH09095 Soybean plastid 17.56 25.81
PGSC0003DMT400056665 Potato mitochondrion 17.67 25.81
AT1G62680.2 Thale cress plastid 16.4 25.73
Bra026836.1-P Field mustard cytosol, mitochondrion 14.65 25.66
Bra027658.1-P Field mustard cytosol, mitochondrion 16.16 25.6
AT1G64583.1 Thale cress mitochondrion 15.23 25.59
Bra026957.1-P Field mustard mitochondrion 17.79 25.37
AT5G41170.1 Thale cress mitochondrion 15.35 25.05
AT1G06580.1 Thale cress mitochondrion 14.53 25.0
PGSC0003DMT400053182 Potato cytosol 16.98 24.37
Bra026401.1-P Field mustard plastid 15.12 24.3
Solyc04g080120.1.1 Tomato extracellular 16.98 23.86
AT4G26800.2 Thale cress mitochondrion, plastid 14.19 23.74
PGSC0003DMT400053556 Potato mitochondrion 12.56 23.53
PGSC0003DMT400015293 Potato mitochondrion 16.63 23.44
PGSC0003DMT400015298 Potato mitochondrion 16.63 23.44
KRH08599 Soybean cytosol, plastid 18.02 23.17
AT1G64100.2 Thale cress cytosol 20.81 22.21
KRH09085 Soybean mitochondrion 18.02 22.02
Bra027726.1-P Field mustard mitochondrion 11.98 21.87
VIT_14s0030g02260.t01 Wine grape cytosol 11.16 21.67
KRH12873 Soybean cytosol 15.58 19.25
Bra027656.1-P Field mustard cytosol 20.93 19.13
KRH39064 Soybean cytosol 20.58 18.27
Bra016758.1-P Field mustard plastid 19.53 14.5
Protein Annotations
EnsemblPlants:HORVU0Hr1G031920.1EnsemblPlantsGene:HORVU0Hr1G031920Gene3D:1.25.40.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002885InterPro:IPR011990InterPro:Pentatricopeptide_repeatInterPro:TPR-like_helical_dom_sfncoils:CoilPANTHER:PTHR24015
PANTHER:PTHR24015:SF874PFAM:PF01535PFAM:PF12854PFAM:PF13041PFscan:PS51375SEG:seg
TIGRFAMs:TIGR00756UniParc:UPI000B46B410UniProt:A0A287EAH3MapMan:35.1::
Description
No Description!
Coordinates
chrchrUn:-:190420265..190422847
Molecular Weight (calculated)
94868.2 Da
IEP (calculated)
8.979
GRAVY (calculated)
0.013
Length
860 amino acids
Sequence
(BLAST)
001: MSRIRLCRRS SCFLCPSSFT SPIQRPCFRR SSYIQPKSGL RLRHCSTTPM SRVRLHRRLL SSTSPPTPSW SPRDAFAAAT ERVRAGTLSR DDAHHMFDEL
101: FRQATPVPGR SLNGFLAALA RATSSSACIT DGPALALALF NRVCREEAGT QVAVPTFCTY SILMDCCCRA RRPDLGLALF GCILRTGLKM DQITANTLLK
201: CLCYANRTEE AVNVLLHRMS ELGCVPNAVS YSIVLKALCD NSMSQRALDL LPMMAKQGGA CSPDVVAYST VIHGFFNEGE TGKACSLFHE MTRQGVKPSV
301: VTYNSIIDAL CKARAMDKAE LVLRQMTTNG AQPDTVTYNC MIHGYATLGR LKEAAKMFRK MKSRGLIPDI VTCNSLMASL CKHGRSKEAA EIFDSMTAKG
401: HKPDIISYCT LLHGYASEGC FADMIGLFNS MKSNGIAANC HVFTILIHAY AKRGMVDDAM LIFTEMQQQG VSPDVVTYST VISTFSRMGR LTDAMEKFNQ
501: MVARGIQPNT AIYSSIIQGF CMHGGLVKAK ELVSEMINKG IPRPDIVFFN SVINSLCKDG RVMDAHDIFD LVTDIGERPD VITFNSLIDG YCLVGKMDKA
601: FKILDAMEVV GVEPNIVTYS TLVDGYCKNR RIDDGLTLFR EMQRKGVKPN TITYGIMLAG LFRAGRTVAA RKKFHEMIES GTTVTVFTYG IILGGLCRNN
701: CADEAIILFQ KLGTMNVKFS ITILNTMINA MYKVQRKEEA KELFATISAS GLLPNESTYG VMIINLLKDG AVEDANNMFS SMEKSGIVPG SRLLNRIIRM
801: LLEKGEIAKA GNYLSKVDGK RILLEASTTS LMLSLFSRKG KYHEDMKLLP AKYNFFDGCS
Best Arabidopsis Sequence Match ( AT1G62590.1 )
(BLAST)
001: MRISISSVVS STTSRIVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHDMKLDDAI GLFGGMVKSR PLPSIVEFNK LLSAIAKMKK
101: FDVVISLGEK MQRLEIVHGL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
301: LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV
401: VTYNTLIKGF CKSKRVEDGT ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL CNNGKLEKAL EVFDYMQKSE
501: IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
601: MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g62590 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD8]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.