Factsheet for HORVU1Hr1G010990.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

plastid 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	secretory

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	HORVU4Hr1G035250.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G011250.1	Barley	cytosol	70.37	70.85
HORVU1Hr1G018190.2	Barley	cytosol	46.46	48.42
HORVU6Hr1G017870.2	Barley	mitochondrion	48.15	47.67
HORVU2Hr1G105460.11	Barley	mitochondrion, plastid	76.77	47.5
HORVU1Hr1G011020.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	89.9	41.78
HORVU0Hr1G035310.1	Barley	cytosol	80.81	41.24
HORVU0Hr1G031920.1	Barley	plastid	99.66	34.42
HORVU1Hr1G010970.1	Barley	mitochondrion	91.92	33.05
Solyc06g007280.2.1	Tomato	cytosol	28.28	32.94
HORVU1Hr1G010890.5	Barley	cytosol	95.29	31.51
HORVU1Hr1G011160.2	Barley	cytosol, plastid	92.26	30.61
HORVU1Hr1G011150.1	Barley	cytosol, plastid	90.57	30.46
HORVU1Hr1G011300.3	Barley	plastid	92.26	29.78
Os04t0349600-01	Rice	plastid	32.66	25.06
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	70.03	25.06
HORVU1Hr1G014040.1	Barley	mitochondrion	68.01	24.25
HORVU6Hr1G076780.7	Barley	mitochondrion	67.0	24.15
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	56.57	24.03
HORVU1Hr1G013810.1	Barley	plastid	67.68	23.96
HORVU1Hr1G014060.1	Barley	plastid	67.0	22.36
HORVU6Hr1G014310.1	Barley	mitochondrion	50.84	21.98
Bra027029.1-P	Field mustard	mitochondrion	17.85	21.81
KXG28799	Sorghum	plastid	55.56	21.71
HORVU1Hr1G004750.6	Barley	plastid	56.57	21.05
Solyc06g005220.2.1	Tomato	cytosol	28.28	20.69
Bra027636.1-P	Field mustard	cytosol	22.56	20.68
Bra026884.1-P	Field mustard	cytosol	31.65	20.48
PGSC0003DMT400052977	Potato	cytosol	26.26	20.05
VIT_12s0028g02320.t01	Wine grape	mitochondrion	31.65	19.71
Zm00001d007531_P001	Maize	plastid	53.54	19.53
Zm00001d007548_P001	Maize	plastid	53.54	19.53
Zm00001d007559_P001	Maize	plastid	53.54	19.46
KRH39054	Soybean	cytosol	31.99	19.11
KRH40513	Soybean	plastid	22.56	19.09
Zm00001d007555_P001	Maize	plastid	52.19	19.04
KXG35774	Sorghum	cytosol, mitochondrion	29.97	18.82
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	48.48	18.8
VIT_14s0081g00110.t01	Wine grape	cytosol	30.98	18.74
KRH39004	Soybean	cytosol	31.31	18.71
HORVU6Hr1G002890.6	Barley	cytosol, plastid	49.49	18.49
KRH39072	Soybean	cytosol	30.64	18.35
KRH39112	Soybean	cytosol	30.64	18.31
KRH39074	Soybean	cytosol	30.3	18.11
KRH39057	Soybean	cytosol	29.97	17.91
KRH09082	Soybean	cytosol	24.58	17.89
Zm00001d007534_P001	Maize	plastid	45.79	17.5
Bra036649.1-P	Field mustard	cytosol	22.56	17.14
KRH39066	Soybean	cytosol	31.99	17.12
PGSC0003DMT400025067	Potato	cytosol	27.27	17.02
PGSC0003DMT400025087	Potato	endoplasmic reticulum	27.95	16.77
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	28.28	16.63
KRH08636	Soybean	cytosol	28.96	16.48
VIT_14s0030g02280.t01	Wine grape	plastid	30.98	16.4
AT5G16640.1	Thale cress	mitochondrion	27.61	16.27
KRH09084	Soybean	plastid	27.95	16.24
KRH09121	Soybean	mitochondrion	28.62	15.92
PGSC0003DMT400008757	Potato	cytosol	26.6	15.86
Os04t0351333-00	Rice	cytosol	46.46	15.7
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	27.61	15.62
KRH39050	Soybean	mitochondrion	27.95	15.6
Solyc06g007740.1.1	Tomato	cytosol	30.98	15.59
Solyc06g007300.1.1	Tomato	extracellular	30.98	15.54
VIT_14s0081g00120.t01	Wine grape	plastid	30.3	15.44
PGSC0003DMT400025074	Potato	cytosol	28.62	15.4
PGSC0003DMT400008759	Potato	cytosol	16.5	15.36
KRH08607	Soybean	cytosol	28.96	15.33
KRH41817	Soybean	mitochondrion	28.62	15.32
KRH08639	Soybean	mitochondrion, plastid	28.96	15.22
AT3G16710.1	Thale cress	mitochondrion	25.93	15.19
AT3G22470.1	Thale cress	cytosol, mitochondrion	31.65	15.19
KRH25652	Soybean	cytosol, golgi	27.61	15.19
AT1G62914.1	Thale cress	mitochondrion	26.94	15.15
KRH48615	Soybean	mitochondrion	27.61	15.05
AT1G63330.2	Thale cress	cytosol	28.28	15.03
KRH08277	Soybean	plastid	28.62	14.99
Bra025516.1-P	Field mustard	cytosol, mitochondrion	23.91	14.88
KRH17148	Soybean	mitochondrion	27.27	14.86
PGSC0003DMT400053556	Potato	mitochondrion	22.9	14.81
Bra006187.1-P	Field mustard	plastid	14.48	14.78
KRH09154	Soybean	mitochondrion	27.61	14.75
PGSC0003DMT400053185	Potato	mitochondrion	29.29	14.75
PGSC0003DMT400052971	Potato	mitochondrion	29.29	14.67
VIT_14s0081g00270.t01	Wine grape	plastid	28.62	14.66
PGSC0003DMT400056665	Potato	mitochondrion	28.96	14.6
KRH08671	Soybean	cytosol, mitochondrion	26.94	14.47
AT1G12300.1	Thale cress	mitochondrion	30.98	14.44
Bra026882.1-P	Field mustard	cytosol	25.93	14.42
Bra031731.1-P	Field mustard	mitochondrion	24.58	14.37
PGSC0003DMT400008760	Potato	mitochondrion	28.28	14.33
KRH08628	Soybean	plastid	26.6	14.31
PGSC0003DMT400056663	Potato	plastid	28.28	14.29
AT1G12620.1	Thale cress	cytosol, mitochondrion	29.63	14.17
AT1G63080.3	Thale cress	mitochondrion	29.29	14.17
Bra026954.1-P	Field mustard	mitochondrion	30.98	14.15
Bra026958.1-P	Field mustard	mitochondrion	30.3	14.13
AT1G63130.1	Thale cress	mitochondrion	29.97	14.13
KRH08625	Soybean	plastid	27.27	14.06
AT1G63400.1	Thale cress	cytosol, plastid	27.27	14.04
KRH40400	Soybean	plastid	27.27	14.04
Bra016762.1-P	Field mustard	mitochondrion	28.62	14.0
Bra026971.1-P	Field mustard	mitochondrion	29.63	13.99
VIT_14s0081g00280.t01	Wine grape	mitochondrion	29.97	13.93
AT1G62910.1	Thale cress	mitochondrion	29.63	13.92
AT1G64583.1	Thale cress	mitochondrion	23.91	13.87
AT5G41170.1	Thale cress	mitochondrion	24.58	13.85
AT1G62670.1	Thale cress	mitochondrion	29.29	13.81
Bra028267.1-P	Field mustard	mitochondrion	28.96	13.74
AT1G63070.1	Thale cress	mitochondrion	27.27	13.73
KRH31646	Soybean	cytosol	23.91	13.71
AT1G63150.1	Thale cress	mitochondrion	28.96	13.67
AT1G12775.1	Thale cress	cytosol, mitochondrion	29.63	13.66
HORVU1Hr1G011400.44	Barley	plastid	28.28	13.64
AT1G62720.1	Thale cress	mitochondrion	22.22	13.61
AT1G12700.2	Thale cress	cytosol	28.28	13.59
PGSC0003DMT400053182	Potato	cytosol	27.27	13.52
Bra027658.1-P	Field mustard	cytosol, mitochondrion	24.58	13.44
AT1G62590.1	Thale cress	mitochondrion	28.62	13.41
KRH09097	Soybean	plastid	26.26	13.38
AT1G62930.1	Thale cress	plastid	28.28	13.35
KRH09095	Soybean	plastid	26.26	13.33
Bra021192.1-P	Field mustard	plastid	22.56	13.29
Bra026957.1-P	Field mustard	mitochondrion	26.94	13.27
AT1G06580.1	Thale cress	mitochondrion	22.22	13.2
AT1G64580.1	Thale cress	mitochondrion	23.23	13.19
Bra026836.1-P	Field mustard	cytosol, mitochondrion	21.55	13.03
Bra027026.1-P	Field mustard	mitochondrion	22.9	13.0
Bra036651.1-P	Field mustard	mitochondrion	23.23	12.9
AT1G62680.2	Thale cress	plastid	23.57	12.77
KRH08599	Soybean	cytosol, plastid	27.61	12.26
AT4G26800.2	Thale cress	mitochondrion, plastid	21.21	12.26
PGSC0003DMT400015293	Potato	mitochondrion	24.92	12.13
PGSC0003DMT400015298	Potato	mitochondrion	24.92	12.13
Solyc04g080120.1.1	Tomato	extracellular	24.92	12.09
KRH12873	Soybean	cytosol	27.27	11.64
Bra026401.1-P	Field mustard	plastid	20.88	11.59
Solyc06g007810.1.1	Tomato	cytosol	10.44	11.57
VIT_14s0030g02260.t01	Wine grape	cytosol	16.84	11.29
KRH09085	Soybean	mitochondrion	26.6	11.22
AT1G64100.2	Thale cress	cytosol	28.62	10.55
KRH39064	Soybean	cytosol	31.31	9.6
Bra027656.1-P	Field mustard	cytosol	29.29	9.25
Bra027726.1-P	Field mustard	mitochondrion	14.14	8.92
Bra016758.1-P	Field mustard	plastid	30.98	7.94
CDX68679	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU1Hr1G010990.1	EnsemblPlantsGene:HORVU1Hr1G010990	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF1
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chrchr1H:-:26088691..26089581

Molecular Weight (calculated)

32283.4 Da

IEP (calculated)

8.344

GRAVY (calculated)

0.046

Length

297 amino acids

Sequence
(BLAST)

001: XGCVPNAVSY SIVLKALCDN SMSQRALDLL PMMAKQGGAC SPDVVAYSTV IHGFFNEGET GKACSLFHEM TRQGVKPSVV TYNSIIDALC KARAMDKAEL
101: VLRQMTTNGA QPDTVTYNCM IHGYATLGRL KEAAKMFRKM KSRGLIPDIV TCNSLMASLC KHGRSKEAAE IFDSMTAKGH KPDIISYCTL LHGYASEGCF
201: ADMIGLFNSM KSNGIAANCH VFTILIHAYA KRGMVDDAML IFTEMQQQGV SPDVVTYSTV ISTFSRMGRL TDAMEKFNQM VARGIQPNTA IYSSIIQ

Best Arabidopsis Sequence Match ( AT1G63080.1 )
(BLAST)

001: MSLAKRFVHL RKASPSFCLR GIYFSGLSYD GYREKLSRNA LLHLKLDEAV DLFGEMVKSR PFPSIVEFSK LLSAIAKMKK FDLVISFGEK MEILGVSHNL
101: YTYNIMINCL CRRSQLSFAL AILGKMMKLG YGPSIVTLNS LLNGFCHGNR ISEAVALVDQ MVEMGYQPDT VTFTTLVHGL FQHNKASEAV ALVERMVVKG
201: CQPDLVTYGA VINGLCKRGE PDLALNLLNK MEKGKIEADV VIYSTVIDSL CKYRHVDDAL NLFTEMDNKG IRPDVFTYSS LISCLCNYGR WSDASRLLSD
301: MLERKINPNV VTFNSLIDAF AKEGKLIEAE KLFDEMIQRS IDPNIVTYNS LINGFCMHDR LDEAQQIFTL MVSKDCLPDV VTYNTLINGF CKAKKVVDGM
401: ELFRDMSRRG LVGNTVTYTT LIHGFFQASD CDNAQMVFKQ MVSDGVHPNI MTYNTLLDGL CKNGKLEKAM VVFEYLQKSK MEPDIYTYNI MSEGMCKAGK
501: VEDGWDLFCS LSLKGVKPDV IAYNTMISGF CKKGLKEEAY TLFIKMKEDG PLPDSGTYNT LIRAHLRDGD KAASAELIKE MRSCRFAGDA STYGLVTDML
601: HDGRLDKGFL EVLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g63080, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.