Factsheet for HORVU1Hr1G011160.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	HORVU4Hr1G035250.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G011020.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.82	93.58
HORVU1Hr1G011250.1	Barley	cytosol	30.84	93.56
HORVU0Hr1G031920.1	Barley	plastid	89.61	93.26
HORVU0Hr1G035310.1	Barley	cytosol	60.56	93.13
HORVU2Hr1G105460.11	Barley	mitochondrion, plastid	49.94	93.12
HORVU1Hr1G011150.1	Barley	cytosol, plastid	91.73	92.98
HORVU1Hr1G010890.5	Barley	cytosol	92.63	92.32
HORVU1Hr1G010990.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	30.61	92.26
HORVU1Hr1G011300.3	Barley	plastid	91.84	89.35
HORVU1Hr1G010970.1	Barley	mitochondrion	81.45	88.26
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	65.7	70.84
HORVU1Hr1G014040.1	Barley	mitochondrion	64.92	69.75
HORVU1Hr1G013810.1	Barley	plastid	64.13	68.41
HORVU6Hr1G076780.7	Barley	mitochondrion	62.68	68.08
HORVU1Hr1G011400.44	Barley	plastid	46.37	67.37
HORVU1Hr1G014060.1	Barley	plastid	64.36	64.72
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	47.37	60.66
HORVU1Hr1G004750.6	Barley	plastid	53.18	59.65
HORVU6Hr1G017870.2	Barley	mitochondrion	18.99	56.67
KXG28799	Sorghum	plastid	47.37	55.79
Zm00001d007548_P001	Maize	plastid	50.28	55.28
Zm00001d007555_P001	Maize	plastid	50.28	55.28
Zm00001d007559_P001	Maize	plastid	50.28	55.08
Zm00001d007531_P001	Maize	plastid	50.06	55.04
Zm00001d007534_P001	Maize	plastid	47.71	54.95
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	44.8	52.35
KXG35774	Sorghum	cytosol, mitochondrion	26.48	50.11
HORVU1Hr1G018190.2	Barley	cytosol	15.53	48.77
Os04t0351333-00	Rice	cytosol	45.03	45.85
Os04t0349600-01	Rice	plastid	19.66	45.48
HORVU6Hr1G014310.1	Barley	mitochondrion	32.96	42.94
HORVU6Hr1G002890.6	Barley	cytosol, plastid	36.98	41.64
Solyc06g007280.2.1	Tomato	cytosol	9.5	33.33
KRH39112	Soybean	cytosol	18.32	33.0
KRH39054	Soybean	cytosol	18.21	32.8
KRH39004	Soybean	cytosol	17.99	32.39
KRH39057	Soybean	cytosol	17.88	32.19
KRH39074	Soybean	cytosol	17.77	31.99
PGSC0003DMT400052977	Potato	cytosol	13.63	31.36
KRH39072	Soybean	cytosol	17.21	31.05
KRH39066	Soybean	cytosol	18.99	30.63
VIT_14s0081g00110.t01	Wine grape	cytosol	16.76	30.55
Solyc06g005220.2.1	Tomato	cytosol	13.85	30.54
KRH09084	Soybean	plastid	17.43	30.53
KRH08636	Soybean	cytosol	17.77	30.46
VIT_14s0081g00120.t01	Wine grape	plastid	19.55	30.02
VIT_12s0028g02320.t01	Wine grape	mitochondrion	15.98	29.98
KRH40513	Soybean	plastid	11.73	29.91
KRH48615	Soybean	mitochondrion	18.21	29.91
KRH17148	Soybean	mitochondrion	17.88	29.36
Bra026884.1-P	Field mustard	cytosol	14.97	29.19
AT5G16640.1	Thale cress	mitochondrion	16.42	29.17
AT1G63330.2	Thale cress	cytosol	18.21	29.16
KRH09121	Soybean	mitochondrion	17.32	29.03
KRH09154	Soybean	mitochondrion	17.99	28.96
KRH08639	Soybean	mitochondrion, plastid	18.21	28.85
KRH08628	Soybean	plastid	17.77	28.8
CDX68679	Canola	cytosol	3.69	28.7
KRH08277	Soybean	plastid	18.1	28.57
KRH08671	Soybean	cytosol, mitochondrion	17.65	28.57
Bra006187.1-P	Field mustard	plastid	9.27	28.52
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	16.09	28.51
Bra026882.1-P	Field mustard	cytosol	16.98	28.46
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.66	28.43
Bra027636.1-P	Field mustard	cytosol	10.28	28.4
Solyc06g007810.1.1	Tomato	cytosol	8.49	28.36
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	16.54	28.19
KRH09082	Soybean	cytosol	12.85	28.19
VIT_14s0081g00270.t01	Wine grape	plastid	18.21	28.1
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.44	28.02
KRH08607	Soybean	cytosol	17.54	27.99
Bra027029.1-P	Field mustard	mitochondrion	7.6	27.98
AT1G62670.1	Thale cress	mitochondrion	19.66	27.94
PGSC0003DMT400008759	Potato	cytosol	9.94	27.9
AT1G62910.1	Thale cress	mitochondrion	19.66	27.85
AT1G12300.1	Thale cress	mitochondrion	19.78	27.79
AT1G63130.1	Thale cress	mitochondrion	19.55	27.78
KRH08625	Soybean	plastid	17.88	27.78
KRH41817	Soybean	mitochondrion	17.21	27.75
Solyc06g007300.1.1	Tomato	extracellular	18.21	27.53
AT1G62930.1	Thale cress	plastid	19.33	27.5
AT1G63070.1	Thale cress	mitochondrion	18.1	27.46
Bra036649.1-P	Field mustard	cytosol	11.96	27.37
AT1G63080.3	Thale cress	mitochondrion	18.77	27.36
Bra016762.1-P	Field mustard	mitochondrion	18.55	27.35
Bra026958.1-P	Field mustard	mitochondrion	19.44	27.32
Solyc06g007740.1.1	Tomato	cytosol	17.99	27.29
Bra021192.1-P	Field mustard	plastid	15.31	27.18
Bra036651.1-P	Field mustard	mitochondrion	16.2	27.1
PGSC0003DMT400025087	Potato	endoplasmic reticulum	14.97	27.07
KRH25652	Soybean	cytosol, golgi	16.31	27.04
KRH40400	Soybean	plastid	17.43	27.04
PGSC0003DMT400025074	Potato	cytosol	16.65	26.99
AT1G62590.1	Thale cress	mitochondrion	19.11	26.97
PGSC0003DMT400008757	Potato	cytosol	14.97	26.91
PGSC0003DMT400025067	Potato	cytosol	14.3	26.89
Bra026971.1-P	Field mustard	mitochondrion	18.88	26.87
Bra031731.1-P	Field mustard	mitochondrion	15.2	26.77
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.22	26.71
KRH39050	Soybean	mitochondrion	15.87	26.69
Bra028267.1-P	Field mustard	mitochondrion	18.66	26.68
AT3G16710.1	Thale cress	mitochondrion	15.08	26.63
Bra027026.1-P	Field mustard	mitochondrion	15.53	26.58
VIT_14s0030g02280.t01	Wine grape	plastid	16.65	26.56
AT1G63150.1	Thale cress	mitochondrion	18.66	26.55
AT1G63400.1	Thale cress	cytosol, plastid	17.09	26.52
AT1G62914.1	Thale cress	mitochondrion	15.64	26.52
Bra026954.1-P	Field mustard	mitochondrion	19.22	26.46
PGSC0003DMT400008760	Potato	mitochondrion	17.32	26.45
AT1G12700.2	Thale cress	cytosol	18.21	26.38
PGSC0003DMT400052971	Potato	mitochondrion	17.43	26.31
VIT_14s0081g00280.t01	Wine grape	mitochondrion	18.77	26.29
PGSC0003DMT400053185	Potato	mitochondrion	17.32	26.27
Bra025516.1-P	Field mustard	cytosol, mitochondrion	13.97	26.21
Bra027658.1-P	Field mustard	cytosol, mitochondrion	15.75	25.97
AT1G62680.2	Thale cress	plastid	15.87	25.91
KRH31646	Soybean	cytosol	14.97	25.87
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.19	25.87
PGSC0003DMT400056663	Potato	plastid	16.87	25.68
AT1G64580.1	Thale cress	mitochondrion	14.97	25.62
AT1G62720.1	Thale cress	mitochondrion	13.85	25.57
KRH09095	Soybean	plastid	16.65	25.47
PGSC0003DMT400056665	Potato	mitochondrion	16.76	25.47
KRH09097	Soybean	plastid	16.54	25.39
Bra026957.1-P	Field mustard	mitochondrion	16.87	25.04
PGSC0003DMT400053182	Potato	cytosol	16.65	24.87
Solyc04g080120.1.1	Tomato	extracellular	16.98	24.84
AT5G41170.1	Thale cress	mitochondrion	14.53	24.67
AT1G64583.1	Thale cress	mitochondrion	14.08	24.61
PGSC0003DMT400015293	Potato	mitochondrion	16.65	24.43
PGSC0003DMT400015298	Potato	mitochondrion	16.65	24.43
Bra026401.1-P	Field mustard	plastid	14.53	24.3
PGSC0003DMT400053556	Potato	mitochondrion	12.29	23.97
AT1G06580.1	Thale cress	mitochondrion	13.3	23.8
AT4G26800.2	Thale cress	mitochondrion, plastid	13.63	23.74
VIT_14s0030g02260.t01	Wine grape	cytosol	11.51	23.25
KRH08599	Soybean	cytosol, plastid	17.21	23.02
Bra027726.1-P	Field mustard	mitochondrion	11.96	22.72
AT1G64100.2	Thale cress	cytosol	20.0	22.21
KRH09085	Soybean	mitochondrion	16.76	21.31
KRH12873	Soybean	cytosol	15.31	19.68
Bra027656.1-P	Field mustard	cytosol	19.89	18.92
KRH39064	Soybean	cytosol	19.55	18.06
Bra016758.1-P	Field mustard	plastid	18.99	14.67

Protein Annotations

EnsemblPlants:HORVU1Hr1G011160.2	EnsemblPlantsGene:HORVU1Hr1G011160	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI000B475DA4	UniProt:A0A287EMA4	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:26659646..26663149

Molecular Weight (calculated)

98840.0 Da

IEP (calculated)

9.092

GRAVY (calculated)

-0.018

Length

895 amino acids

Sequence
(BLAST)

001: RLTQTSKTRL TICDSKIQIE SSLHRVRTRR PLPPTMSRIR LCRRSSCFLC PSSFTSPIQR PCFRRSSYIQ PKSGLRLRHC STTPMSRVRL HRRLLSSTSP
101: PSPSWSPRDA FAAATERVRA GTLSRDDAHH MFDELFRQAT PVPGRSLNGF LTALARATSS SACITDGPAL ALALFNRVCR EQAGPRVVPL TVHTYSILMD
201: CCCRARRPDL GLALFGCILR TGLKMDQITA STLLKCLCYA DRTEEAVNVL LHRMSELGCV PDAVSYSIVL KALCDNSMSQ RALDLLQMMA KQGGGCSPDV
301: VAYNTVIQGF FKEGETGKAC SLFHEMKRQG VVPSVATYNS IIDALCKARA MDKAELVLRQ MTTDGAQPDT VTYSCMIHGY ATLGRLKEAA KMFREMKKRG
401: LIPNIVICNS FLASLCKHGR SKEAAEIFDS MTAKGHKPDI VSYCTLLHGY ASEGCFADMI GLFNSMKSNG IAANCHVFTI LIHAYAKRGM VDDAMLIFTE
501: MQQQGVSPNV VTYSTVISAF SRMGRLTDAM EKFNQMVARG IQPNTAVYNS IIQGFCMHGG LVKAKELVSE MINKGIPRPD ILFFSSVINS LCKDGRVMDA
601: HDIFDLVTDI GERPDVITFN SLIDGYCLVG KMDKAFKILD AMEVVGVEPN IVTYSTLVNG YCKNRRIDDG LTLFREMLCK GVKPNTITYN IILDGLFRSG
701: RTVAARKKFH EMIESGTTVT ISTYGIILGG LCRNNCADEA IVLFQKLGAM NVKFSITILN TMINAMYKVQ RKEEAKELFA AISDSGLLPN ESTYGVMIKN
801: LLKDGAVEDA NNMFSSMEKS GIVPSSRLIN GIIRLLLDNG EIAKAGNYLS KVDGKRILLE ASTTSLMLSL FSRKGKYHED MTLLPAKYQF FDGCS

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.