Factsheet for HORVU1Hr1G013810.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	HORVU4Hr1G035250.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G076780.7	Barley	mitochondrion	71.51	72.82
HORVU1Hr1G014040.1	Barley	mitochondrion	71.51	72.03
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	71.04	71.81
TraesCS1A01G067000.1	Wheat	mitochondrion	60.19	70.53
TraesCS1B01G085300.1	Wheat	mitochondrion	66.51	70.45
TraesCS1B01G085400.1	Wheat	cytosol	53.64	70.2
HORVU0Hr1G035310.1	Barley	cytosol	48.15	69.42
HORVU1Hr1G011250.1	Barley	cytosol	24.31	69.15
HORVU1Hr1G011020.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	52.56	69.01
HORVU1Hr1G010970.1	Barley	mitochondrion	67.34	68.4
HORVU1Hr1G010990.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.96	67.68
HORVU0Hr1G031920.1	Barley	plastid	68.3	66.63
HORVU1Hr1G014060.1	Barley	plastid	69.49	65.51
HORVU2Hr1G105460.11	Barley	mitochondrion, plastid	36.71	64.17
HORVU1Hr1G011160.2	Barley	cytosol, plastid	68.41	64.13
HORVU1Hr1G010890.5	Barley	cytosol	67.94	63.47
HORVU1Hr1G011150.1	Barley	cytosol, plastid	66.51	63.19
HORVU1Hr1G011400.44	Barley	plastid	45.17	61.53
HORVU1Hr1G011300.3	Barley	plastid	67.34	61.41
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	50.3	60.37
HORVU1Hr1G004750.6	Barley	plastid	57.21	60.15
KXG28799	Sorghum	plastid	53.64	59.21
Zm00001d007555_P001	Maize	plastid	56.14	57.86
Zm00001d007531_P001	Maize	plastid	55.66	57.37
Zm00001d007548_P001	Maize	plastid	55.66	57.37
Zm00001d007559_P001	Maize	plastid	55.78	57.28
Zm00001d007534_P001	Maize	plastid	53.04	57.27
HORVU6Hr1G017870.2	Barley	mitochondrion	20.02	56.0
KXG35774	Sorghum	cytosol, mitochondrion	30.75	54.55
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	48.03	52.61
HORVU1Hr1G018190.2	Barley	cytosol	15.97	47.02
Os04t0351333-00	Rice	cytosol	47.2	45.05
Os04t0349600-01	Rice	plastid	20.38	44.19
HORVU6Hr1G014310.1	Barley	mitochondrion	34.45	42.07
HORVU6Hr1G002890.6	Barley	cytosol, plastid	38.74	40.88
Solyc06g007280.2.1	Tomato	cytosol	10.25	33.73
KRH39057	Soybean	cytosol	18.83	31.79
KRH39072	Soybean	cytosol	18.36	31.05
KRH39054	Soybean	cytosol	18.36	30.99
KRH39004	Soybean	cytosol	18.24	30.78
KRH39112	Soybean	cytosol	18.24	30.78
VIT_12s0028g02320.t01	Wine grape	mitochondrion	17.4	30.61
KRH39074	Soybean	cytosol	18.0	30.38
VIT_14s0081g00110.t01	Wine grape	cytosol	17.4	29.74
Bra026882.1-P	Field mustard	cytosol	18.83	29.59
KRH09084	Soybean	plastid	17.64	28.96
KRH48615	Soybean	mitochondrion	18.47	28.44
Solyc06g005220.2.1	Tomato	cytosol	13.71	28.33
KRH17148	Soybean	mitochondrion	18.24	28.07
VIT_14s0081g00120.t01	Wine grape	plastid	19.43	27.96
KRH09154	Soybean	mitochondrion	18.47	27.88
Bra006187.1-P	Field mustard	plastid	9.65	27.84
KRH08625	Soybean	plastid	19.07	27.78
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	16.69	27.72
Bra026884.1-P	Field mustard	cytosol	15.14	27.67
KRH08636	Soybean	cytosol	17.16	27.59
KRH39066	Soybean	cytosol	18.24	27.57
KRH08628	Soybean	plastid	18.12	27.54
PGSC0003DMT400052977	Potato	cytosol	12.75	27.51
KRH41817	Soybean	mitochondrion	18.12	27.39
AT1G63330.2	Thale cress	cytosol	18.12	27.19
Bra027636.1-P	Field mustard	cytosol	10.49	27.16
KRH08277	Soybean	plastid	18.36	27.16
KRH08671	Soybean	cytosol, mitochondrion	17.88	27.12
KRH40513	Soybean	plastid	11.32	27.07
PGSC0003DMT400053185	Potato	mitochondrion	18.95	26.95
KRH08607	Soybean	cytosol	18.0	26.92
KRH39050	Soybean	mitochondrion	17.04	26.88
AT5G16640.1	Thale cress	mitochondrion	16.09	26.79
KRH09082	Soybean	cytosol	12.99	26.72
KRH40400	Soybean	plastid	18.36	26.69
PGSC0003DMT400008759	Potato	cytosol	10.13	26.65
KRH09121	Soybean	mitochondrion	16.92	26.59
VIT_14s0081g00270.t01	Wine grape	plastid	18.36	26.55
KRH08639	Soybean	mitochondrion, plastid	17.88	26.55
AT1G62670.1	Thale cress	mitochondrion	19.9	26.51
VIT_14s0030g02280.t01	Wine grape	plastid	17.64	26.38
KRH25652	Soybean	cytosol, golgi	16.92	26.3
Bra026958.1-P	Field mustard	mitochondrion	19.9	26.22
PGSC0003DMT400025087	Potato	endoplasmic reticulum	15.38	26.06
AT1G63130.1	Thale cress	mitochondrion	19.55	26.03
VIT_14s0081g00280.t01	Wine grape	mitochondrion	19.79	25.98
KRH31646	Soybean	cytosol	15.97	25.87
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.07	25.85
Bra026971.1-P	Field mustard	mitochondrion	19.31	25.76
AT1G12300.1	Thale cress	mitochondrion	19.55	25.75
KRH09095	Soybean	plastid	17.88	25.64
Solyc06g007740.1.1	Tomato	cytosol	18.0	25.59
Bra036649.1-P	Field mustard	cytosol	11.92	25.58
PGSC0003DMT400025074	Potato	cytosol	16.81	25.54
Bra016762.1-P	Field mustard	mitochondrion	18.47	25.54
PGSC0003DMT400008757	Potato	cytosol	15.14	25.5
AT1G12620.1	Thale cress	cytosol, mitochondrion	18.83	25.44
AT1G62930.1	Thale cress	plastid	19.07	25.44
PGSC0003DMT400025067	Potato	cytosol	14.42	25.42
AT1G12700.2	Thale cress	cytosol	18.71	25.4
Bra021192.1-P	Field mustard	plastid	15.26	25.4
Bra031731.1-P	Field mustard	mitochondrion	15.38	25.39
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	15.85	25.33
AT1G63070.1	Thale cress	mitochondrion	17.76	25.25
AT1G63080.3	Thale cress	mitochondrion	18.47	25.24
Bra028267.1-P	Field mustard	mitochondrion	18.83	25.24
KRH09097	Soybean	plastid	17.52	25.21
AT1G62590.1	Thale cress	mitochondrion	18.95	25.08
Solyc06g007300.1.1	Tomato	extracellular	17.64	25.0
Solyc06g007810.1.1	Tomato	cytosol	7.99	25.0
AT1G63400.1	Thale cress	cytosol, plastid	17.16	24.96
AT1G62914.1	Thale cress	mitochondrion	15.61	24.81
Bra026954.1-P	Field mustard	mitochondrion	19.19	24.77
Bra027658.1-P	Field mustard	cytosol, mitochondrion	15.85	24.49
AT1G63150.1	Thale cress	mitochondrion	18.36	24.48
AT3G16710.1	Thale cress	mitochondrion	14.78	24.46
PGSC0003DMT400056665	Potato	mitochondrion	17.16	24.45
AT1G62910.1	Thale cress	mitochondrion	18.36	24.37
PGSC0003DMT400056663	Potato	plastid	17.04	24.32
PGSC0003DMT400052971	Potato	mitochondrion	17.04	24.11
Bra025516.1-P	Field mustard	cytosol, mitochondrion	13.71	24.11
AT1G12775.1	Thale cress	cytosol, mitochondrion	18.47	24.07
Bra026957.1-P	Field mustard	mitochondrion	17.28	24.05
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.06	24.03
AT1G64583.1	Thale cress	mitochondrion	14.54	23.83
Bra036651.1-P	Field mustard	mitochondrion	15.14	23.74
PGSC0003DMT400053182	Potato	cytosol	16.92	23.71
PGSC0003DMT400008760	Potato	mitochondrion	16.45	23.55
AT5G41170.1	Thale cress	mitochondrion	14.78	23.53
PGSC0003DMT400053556	Potato	mitochondrion	12.87	23.53
Bra027029.1-P	Field mustard	mitochondrion	6.79	23.46
Solyc04g080120.1.1	Tomato	extracellular	17.04	23.37
AT1G64580.1	Thale cress	mitochondrion	14.54	23.33
AT1G62720.1	Thale cress	mitochondrion	13.47	23.3
AT1G62680.2	Thale cress	plastid	15.14	23.18
Bra027026.1-P	Field mustard	mitochondrion	14.3	22.94
CDX68679	Canola	cytosol	3.1	22.61
AT1G06580.1	Thale cress	mitochondrion	13.47	22.6
PGSC0003DMT400015293	Potato	mitochondrion	16.33	22.46
PGSC0003DMT400015298	Potato	mitochondrion	16.33	22.46
KRH08599	Soybean	cytosol, plastid	17.4	21.82
AT4G26800.2	Thale cress	mitochondrion, plastid	13.11	21.4
VIT_14s0030g02260.t01	Wine grape	cytosol	11.2	21.22
Bra026401.1-P	Field mustard	plastid	13.47	21.12
KRH09085	Soybean	mitochondrion	17.64	21.02
Bra027726.1-P	Field mustard	mitochondrion	11.68	20.81
AT1G64100.2	Thale cress	cytosol	19.9	20.72
Bra027656.1-P	Field mustard	cytosol	22.05	19.66
KRH12873	Soybean	cytosol	15.85	19.11
KRH39064	Soybean	cytosol	20.02	17.34
Bra016758.1-P	Field mustard	plastid	18.95	13.72

Protein Annotations

EnsemblPlants:HORVU1Hr1G013810.1	EnsemblPlantsGene:HORVU1Hr1G013810	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI000B47A56B	UniProt:A0A287EP60	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr1H:+:37317203..37320170

Molecular Weight (calculated)

92277.7 Da

IEP (calculated)

8.414

GRAVY (calculated)

0.056

Length

839 amino acids

Sequence
(BLAST)

001: NDTPVGLAMT STPMCRIGLG LRRRSSTSPT SFVCRRSSST STLTSPPSRS WSPQAAFAAA TERVRAGTLS RQDAHHLFDE LLGQATPVPE RYLDGFLAAL
101: ARAPDSSACG DGPALALCLF NRICREEAGM RVAPPTVVTY SILMNCCCLA RRPELGLAFF GRILRTGLKT NQNFASTFLK CLCGAKQVDE AVSVLLHRMS
201: DLCYVPNEFS YNIVLRSLCQ DSRSQRALDL LRMMAKGGVC SPNVVTYTMV IHGFLKEGKV SKACNLFHEM MPQGVVPDVV TYSLILDALC KARAMDKAKV
301: FLRQMVDNGV QPNNVTYTAM IHGYSTLGQW KKATQMFREM TSQGLTPDTV TLNSFMASLC KHGRTKEAAE IFYSMAAKGQ KPNIITYRIL LHGFGSKGCF
401: ADMVNLYHSM ADNGILADCQ VFTILIAAYA KRGMVDEAML IFTEMQEQGV SPDVFTYGNV IAAFCRTGRM ADAMDKFCQM IGKGVQPNTV VYHSLIQGFC
501: THGDLGKAKE LVSEMTNKGI PRPNMVFFSS IINNLCKEGR VTDAQDVFDL VIHFGERPNV IMFNSLIDGY CLVGEMEKAL RVLDAMVSAG IEPNVVTYGT
601: LVNGYCKSGR IDDGLILFRE MSHKRVEPTA IIYSTILNGL FHAGRTVAAK EMFHEMIKTG ITVSISTYRI ILGGLCRNSC DDEAITLFQK LGAMNVKLDV
701: TILNTMISAM FRVRRREEAN DLFAAISASG LVPNASTYHV MIKNLIKEGS VEEAESMFSS MEKTGCAPDS RLINDIIRIL LEKGEIVKAG NYMSKVDGKS
801: ISLEASTTSL LISLFSSKGK YQEQINLLPV KYRFFEGVS

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.