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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 4
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G62670.1 HORVU4Hr1G035250.1 AT4G26630.1 25387881
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU1Hr1G010990.1 Barley cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 47.5 76.77
HORVU6Hr1G017870.2 Barley mitochondrion 36.46 58.33
HORVU1Hr1G011250.1 Barley cytosol 33.96 55.25
HORVU0Hr1G031920.1 Barley plastid 91.46 51.05
HORVU1Hr1G011160.2 Barley cytosol, plastid 93.12 49.94
HORVU1Hr1G011150.1 Barley cytosol, plastid 91.04 49.49
HORVU1Hr1G010890.5 Barley cytosol 91.67 49.0
HORVU1Hr1G011300.3 Barley plastid 92.08 48.04
HORVU1Hr1G018190.2 Barley cytosol 26.25 44.21
HORVU1Hr1G010970.1 Barley mitochondrion 74.58 43.34
Os04t0349600-01 Rice plastid 34.17 42.38
HORVU1Hr1G014030.2 Barley mitochondrion, plastid 63.96 36.99
HORVU1Hr1G013810.1 Barley plastid 64.17 36.71
HORVU1Hr1G011400.44 Barley plastid 47.08 36.69
HORVU1Hr1G014040.1 Barley mitochondrion 63.54 36.61
HORVU6Hr1G076780.7 Barley mitochondrion 62.08 36.16
HORVU1Hr1G011020.4 Barley cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 48.12 36.15
HORVU1Hr1G014060.1 Barley plastid 63.54 34.27
Solyc06g007280.2.1 Tomato cytosol 17.29 32.55
HORVU0Hr1G035310.1 Barley cytosol 38.96 32.13
KXG28799 Sorghum plastid 50.83 32.11
HORVU1Hr1G004750.6 Barley plastid 49.38 29.7
Zm00001d007548_P001 Maize plastid 48.75 28.75
Zm00001d007559_P001 Maize plastid 48.75 28.64
Zm00001d007531_P001 Maize plastid 48.12 28.38
Zm00001d007555_P001 Maize plastid 47.5 28.01
HORVU6Hr1G014310.1 Barley mitochondrion 39.79 27.8
Zm00001d007534_P001 Maize plastid 44.17 27.28
HORVU7Hr1G029840.1 Barley cytosol, mitochondrion 38.54 26.47
Os04t0350000-02 Rice cytosol, mitochondrion, plastid 40.21 25.2
HORVU6Hr1G002890.6 Barley cytosol, plastid 37.71 22.77
KRH40513 Soybean plastid 15.42 21.08
VIT_12s0028g02320.t01 Wine grape mitochondrion 20.83 20.96
KRH09084 Soybean plastid 22.29 20.94
KRH39004 Soybean cytosol 21.25 20.52
KRH39054 Soybean cytosol 21.25 20.52
KRH39057 Soybean cytosol 20.62 19.92
KRH39072 Soybean cytosol 20.42 19.76
KRH39074 Soybean cytosol 20.42 19.72
AT1G62914.1 Thale cress mitochondrion 21.67 19.7
Os04t0351333-00 Rice cytosol 35.83 19.57
KRH09121 Soybean mitochondrion 21.67 19.48
AT5G16640.1 Thale cress mitochondrion 20.42 19.44
VIT_14s0030g02280.t01 Wine grape plastid 22.71 19.43
KRH39112 Soybean cytosol 20.0 19.32
KRH39066 Soybean cytosol 22.08 19.1
Bra036649.1-P Field mustard cytosol 15.42 18.93
KRH39050 Soybean mitochondrion 20.83 18.8
AT1G63330.2 Thale cress cytosol 21.88 18.78
KRH08636 Soybean cytosol 20.42 18.77
AT1G63400.1 Thale cress cytosol, plastid 22.5 18.72
AT1G12300.1 Thale cress mitochondrion 24.79 18.68
AT1G12620.1 Thale cress cytosol, mitochondrion 24.17 18.68
Bra026971.1-P Field mustard mitochondrion 24.38 18.6
VIT_14s0081g00120.t01 Wine grape plastid 22.29 18.35
KRH09154 Soybean mitochondrion 21.25 18.35
AT1G12775.1 Thale cress cytosol, mitochondrion 24.58 18.32
KRH08628 Soybean plastid 21.04 18.3
AT1G63080.3 Thale cress mitochondrion 23.33 18.24
Solyc06g005220.2.1 Tomato cytosol 15.42 18.23
Bra026958.1-P Field mustard mitochondrion 24.17 18.21
KRH41817 Soybean mitochondrion 21.04 18.2
KRH17148 Soybean mitochondrion 20.62 18.17
AT1G62670.1 Thale cress mitochondrion 23.75 18.1
AT1G63130.1 Thale cress mitochondrion 23.75 18.1
KRH00678 Soybean endoplasmic reticulum, extracellular, plastid 19.79 18.1
KRH48615 Soybean mitochondrion 20.42 17.98
AT1G64580.1 Thale cress mitochondrion 19.58 17.97
AT1G63070.1 Thale cress mitochondrion 22.08 17.97
Bra016762.1-P Field mustard mitochondrion 22.71 17.96
AT3G22470.1 Thale cress cytosol, mitochondrion 23.12 17.93
Bra028267.1-P Field mustard mitochondrion 23.33 17.89
KRH08277 Soybean plastid 21.04 17.81
Solyc06g007740.1.1 Tomato cytosol 21.88 17.8
KRH08639 Soybean mitochondrion, plastid 20.83 17.7
AT1G62590.1 Thale cress mitochondrion 23.33 17.67
Bra021192.1-P Field mustard plastid 18.54 17.66
KRH08607 Soybean cytosol 20.62 17.65
Bra027636.1-P Field mustard cytosol 11.88 17.59
Bra027026.1-P Field mustard mitochondrion 19.17 17.59
VIT_14s0081g00270.t01 Wine grape plastid 21.25 17.59
PGSC0003DMT400025074 Potato cytosol 20.21 17.57
Solyc06g007300.1.1 Tomato extracellular 21.67 17.57
AT1G62910.1 Thale cress mitochondrion 23.12 17.56
AT3G16710.1 Thale cress mitochondrion 18.54 17.55
KRH08671 Soybean cytosol, mitochondrion 20.21 17.54
AT1G62930.1 Thale cress plastid 22.92 17.49
PGSC0003DMT400053185 Potato mitochondrion 21.46 17.46
KRH09095 Soybean plastid 21.25 17.44
AT1G06580.1 Thale cress mitochondrion 18.12 17.4
Bra026954.1-P Field mustard mitochondrion 23.54 17.38
KRH40400 Soybean plastid 20.83 17.33
AT1G63150.1 Thale cress mitochondrion 22.71 17.33
AT1G62720.1 Thale cress mitochondrion 17.5 17.32
AT4G26800.2 Thale cress mitochondrion, plastid 18.54 17.32
PGSC0003DMT400053556 Potato mitochondrion 16.46 17.21
Bra036651.1-P Field mustard mitochondrion 19.17 17.2
AT1G64583.1 Thale cress mitochondrion 18.33 17.19
KRH09097 Soybean plastid 20.83 17.15
KRH08635 Soybean cytosol, golgi, mitochondrion, plastid 17.92 17.03
VIT_14s0081g00110.t01 Wine grape cytosol 17.29 16.9
Bra027029.1-P Field mustard mitochondrion 8.54 16.87
PGSC0003DMT400052971 Potato mitochondrion 20.83 16.86
Bra026882.1-P Field mustard cytosol 18.75 16.85
KRH08625 Soybean plastid 20.21 16.84
PGSC0003DMT400025087 Potato endoplasmic reticulum 17.29 16.77
AT1G12700.2 Thale cress cytosol 21.46 16.67
KRH09082 Soybean cytosol 14.17 16.67
PGSC0003DMT400008757 Potato cytosol 17.29 16.67
PGSC0003DMT400056663 Potato plastid 20.21 16.5
PGSC0003DMT400056665 Potato mitochondrion 20.21 16.47
PGSC0003DMT400052977 Potato cytosol 13.33 16.45
KRH31646 Soybean cytosol 17.71 16.41
PGSC0003DMT400053182 Potato cytosol 20.42 16.36
Bra026884.1-P Field mustard cytosol 15.62 16.34
VIT_14s0081g00280.t01 Wine grape mitochondrion 21.67 16.28
Bra026957.1-P Field mustard mitochondrion 20.42 16.25
KRH25652 Soybean cytosol, golgi 18.12 16.11
AT1G62680.2 Thale cress plastid 18.33 16.06
PGSC0003DMT400025067 Potato cytosol 15.83 15.97
Bra025516.1-P Field mustard cytosol, mitochondrion 15.83 15.93
PGSC0003DMT400008760 Potato mitochondrion 19.38 15.87
AT5G41170.1 Thale cress mitochondrion 17.29 15.75
Bra026401.1-P Field mustard plastid 17.5 15.7
Bra027658.1-P Field mustard cytosol, mitochondrion 17.71 15.65
Bra031731.1-P Field mustard mitochondrion 16.25 15.35
Solyc04g080120.1.1 Tomato extracellular 19.38 15.2
PGSC0003DMT400015293 Potato mitochondrion 19.17 15.08
PGSC0003DMT400015298 Potato mitochondrion 19.17 15.08
KRH08599 Soybean cytosol, plastid 20.42 14.65
KRH09085 Soybean mitochondrion 21.25 14.49
Bra026836.1-P Field mustard cytosol, mitochondrion 14.38 14.05
AT1G64100.2 Thale cress cytosol 23.54 14.02
Bra027726.1-P Field mustard mitochondrion 13.75 14.01
Bra006187.1-P Field mustard plastid 7.92 13.06
KXG35774 Sorghum cytosol, mitochondrion 12.71 12.9
KRH12873 Soybean cytosol 18.54 12.79
KRH39064 Soybean cytosol 22.71 11.25
Bra027656.1-P Field mustard cytosol 21.88 11.16
Bra016758.1-P Field mustard plastid 22.92 9.49
PGSC0003DMT400008759 Potato cytosol 6.25 9.4
VIT_14s0030g02260.t01 Wine grape cytosol 7.71 8.35
Solyc06g007810.1.1 Tomato cytosol 3.96 7.09
CDX68679 Canola cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:HORVU2Hr1G105460.11EnsemblPlantsGene:HORVU2Hr1G105460Gene3D:1.25.40.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002885InterPro:IPR011990InterPro:Pentatricopeptide_repeatInterPro:TPR-like_helical_dom_sfPANTHER:PTHR24015PANTHER:PTHR24015:SF874
PFAM:PF01535PFAM:PF12854PFAM:PF13041PFscan:PS51375SEG:segTIGRFAMs:TIGR00756
UniParc:UPI000B475077UniProt:A0A287JAY2MapMan:35.1:::
Description
No Description!
Coordinates
chrchr2H:-:706790494..706803762
Molecular Weight (calculated)
53067.9 Da
IEP (calculated)
9.493
GRAVY (calculated)
-0.050
Length
480 amino acids
Sequence
(BLAST)
001: MSRIRLCRRS SCFLCPSSFT SPSQRPCFRR SSYIQPKSGL GLRHCSTTPM SRVRLHRRLL SSTSPPSPSW SPRDAFAAAT ERVRAGTLSR DDAHHMFDEL
101: FRQATPVPGR SLNGFLTALA RATSSSACIT DGPALALALF NRVCREQAGP RVVPLTVHTY SILMDCCCRA RRPDLGLVLF GCILRTGLKI HQITASTLLK
201: CLCYANRTEE AVNVLLHRMS ELGCVPNVFS YSIILKGLCD NSMSQRALDL FQMMAKEGGA CSPNVVAYNT VIHGFFKEGE TGKACSLFHE MTRQGVKPDV
301: VTYNLIIDAL CKARAMDKAE LVLRQMTTNG AQPDTVTYNC MIHGYATLGR LKEAAKMFRK MKSRGLIPNI VICNSFLASL CKHGRSKEAA EIFDSMTAKG
401: HKPDIVSYCT LLHGYASEGW FADMIGLFNS MKSNGIAADC RVFNILIHAY AKRGMVDDAM LIFTEMQQQG VKDRAKNLPV
Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)
001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS
Arabidopsis Description
RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.